HEADER CELL CYCLE 24-JUN-02 1H0L TITLE HUMAN PRION PROTEIN 121-230 M166C/E221C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 121-230; COMPND 5 SYNONYM: PRP, PRION PROTEIN, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET A KEYWDS CELL CYCLE, BRAIN, GLYCOPROTEIN, GPI-ANCHOR, REPEAT, KEYWDS 2 POLYMORPHISM, DISEASE MUTATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.ZAHN,P.GUNTERT,K.WUTHRICH REVDAT 3 15-MAY-13 1H0L 1 HEADER KEYWDS AUTHOR REMARK REVDAT 3 2 VERSN ATOM TER REVDAT 2 24-FEB-09 1H0L 1 VERSN REVDAT 1 30-JAN-03 1H0L 0 JRNL AUTH R.ZAHN,P.GUNTERT,C.VON SCHROETTER,K.WUTHRICH JRNL TITL NMR STRUCTURE OF A VARIANT HUMAN PRION PROTEIN JRNL TITL 2 WITH TWO DISULFIDE BRIDGES JRNL REF J.MOL.BIOL. V. 326 225 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12547204 JRNL DOI 10.1016/S0022-2836(02)01332-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : KORADI, BILLETER, GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-02. REMARK 100 THE PDBE ID CODE IS EBI-9859. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.01 M REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 DISULFIDE BOND BETWEEN C166 AND C221 REMARK 400 REMARK 400 ENGINEERED MUTATION MET 166 CYS AND GLU 221 CYS CHAIN A REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 164 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 3 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 ARG A 164 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 4 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 CYS A 166 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 6 TYR A 226 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 CYS A 166 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 8 CYS A 214 CA - CB - SG ANGL. DEV. = -6.9 DEGREES REMARK 500 8 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 TYR A 226 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 12 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 13 CYS A 214 CA - CB - SG ANGL. DEV. = -7.0 DEGREES REMARK 500 14 ARG A 164 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 18 TYR A 169 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 120 112.92 86.52 REMARK 500 1 VAL A 122 152.69 70.25 REMARK 500 1 TYR A 128 172.18 44.17 REMARK 500 1 ARG A 148 0.99 -66.99 REMARK 500 1 TYR A 149 -62.86 -93.28 REMARK 500 1 ASN A 171 174.11 63.83 REMARK 500 2 MET A 134 -154.27 -138.22 REMARK 500 2 ILE A 138 79.72 52.46 REMARK 500 2 PRO A 165 -174.84 -63.82 REMARK 500 2 TYR A 169 90.51 -56.95 REMARK 500 2 SER A 170 39.27 -140.28 REMARK 500 2 ASN A 171 162.32 62.32 REMARK 500 2 CYS A 221 -73.09 -50.90 REMARK 500 2 ARG A 228 -80.40 -80.42 REMARK 500 3 SER A 120 161.94 67.35 REMARK 500 3 ILE A 138 73.02 53.44 REMARK 500 3 ASP A 147 -62.21 -93.65 REMARK 500 3 TYR A 169 98.08 -31.19 REMARK 500 3 ASN A 171 -171.63 52.30 REMARK 500 3 PHE A 198 178.65 -53.77 REMARK 500 4 SER A 132 178.40 49.26 REMARK 500 4 ILE A 138 73.74 49.32 REMARK 500 4 CYS A 166 17.96 -67.71 REMARK 500 4 TYR A 169 24.83 43.65 REMARK 500 4 SER A 170 46.70 -80.98 REMARK 500 4 ASN A 171 162.25 70.42 REMARK 500 5 VAL A 122 152.40 62.06 REMARK 500 5 LEU A 125 -88.62 -89.19 REMARK 500 5 PRO A 137 6.40 -69.88 REMARK 500 5 ILE A 138 72.29 37.06 REMARK 500 5 GLU A 168 39.26 -99.51 REMARK 500 5 SER A 170 -46.36 -157.14 REMARK 500 5 ARG A 228 -68.62 -130.25 REMARK 500 6 SER A 120 148.65 67.49 REMARK 500 6 TYR A 128 -169.48 41.43 REMARK 500 6 ILE A 138 77.20 50.02 REMARK 500 6 GLU A 168 62.80 -106.77 REMARK 500 6 SER A 170 52.14 -171.12 REMARK 500 6 ASN A 171 -179.96 60.05 REMARK 500 7 VAL A 121 175.59 58.23 REMARK 500 7 VAL A 122 152.44 67.06 REMARK 500 7 MET A 129 -160.41 -112.99 REMARK 500 7 ILE A 138 74.37 47.74 REMARK 500 7 PRO A 165 -173.32 -67.27 REMARK 500 7 GLU A 168 -74.64 -69.50 REMARK 500 7 TYR A 169 171.44 65.72 REMARK 500 7 SER A 170 -80.01 66.60 REMARK 500 7 ASN A 171 165.90 178.37 REMARK 500 8 SER A 120 23.62 47.42 REMARK 500 8 ILE A 138 72.15 44.49 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 119 SER A 120 1 145.44 REMARK 500 GLY A 127 TYR A 128 7 144.75 REMARK 500 GLY A 229 SER A 230 14 147.62 REMARK 500 GLY A 142 SER A 143 17 149.29 REMARK 500 GLY A 229 SER A 230 17 142.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 148 0.09 SIDE CHAIN REMARK 500 1 ARG A 151 0.08 SIDE CHAIN REMARK 500 1 ARG A 164 0.10 SIDE CHAIN REMARK 500 1 TYR A 218 0.09 SIDE CHAIN REMARK 500 1 TYR A 225 0.06 SIDE CHAIN REMARK 500 1 ARG A 228 0.12 SIDE CHAIN REMARK 500 2 TYR A 128 0.06 SIDE CHAIN REMARK 500 2 TYR A 163 0.09 SIDE CHAIN REMARK 500 2 ARG A 164 0.12 SIDE CHAIN REMARK 500 2 TYR A 226 0.07 SIDE CHAIN REMARK 500 3 ARG A 148 0.13 SIDE CHAIN REMARK 500 3 ARG A 156 0.08 SIDE CHAIN REMARK 500 3 TYR A 163 0.08 SIDE CHAIN REMARK 500 3 ARG A 220 0.08 SIDE CHAIN REMARK 500 3 ARG A 228 0.10 SIDE CHAIN REMARK 500 4 ARG A 151 0.08 SIDE CHAIN REMARK 500 4 PHE A 175 0.10 SIDE CHAIN REMARK 500 4 ARG A 208 0.17 SIDE CHAIN REMARK 500 5 TYR A 150 0.09 SIDE CHAIN REMARK 500 5 ARG A 164 0.18 SIDE CHAIN REMARK 500 5 PHE A 175 0.08 SIDE CHAIN REMARK 500 5 ARG A 208 0.10 SIDE CHAIN REMARK 500 6 ARG A 148 0.10 SIDE CHAIN REMARK 500 7 ARG A 148 0.08 SIDE CHAIN REMARK 500 7 ARG A 156 0.11 SIDE CHAIN REMARK 500 7 TYR A 218 0.15 SIDE CHAIN REMARK 500 8 ARG A 148 0.10 SIDE CHAIN REMARK 500 8 TYR A 150 0.12 SIDE CHAIN REMARK 500 8 TYR A 169 0.08 SIDE CHAIN REMARK 500 8 PHE A 175 0.09 SIDE CHAIN REMARK 500 10 ARG A 148 0.09 SIDE CHAIN REMARK 500 11 TYR A 163 0.07 SIDE CHAIN REMARK 500 11 ARG A 164 0.11 SIDE CHAIN REMARK 500 12 TYR A 128 0.07 SIDE CHAIN REMARK 500 12 ARG A 151 0.14 SIDE CHAIN REMARK 500 12 TYR A 163 0.10 SIDE CHAIN REMARK 500 12 TYR A 218 0.09 SIDE CHAIN REMARK 500 13 ARG A 148 0.10 SIDE CHAIN REMARK 500 13 TYR A 149 0.08 SIDE CHAIN REMARK 500 13 TYR A 150 0.12 SIDE CHAIN REMARK 500 13 ARG A 164 0.08 SIDE CHAIN REMARK 500 14 ARG A 136 0.08 SIDE CHAIN REMARK 500 14 ARG A 148 0.12 SIDE CHAIN REMARK 500 14 TYR A 149 0.08 SIDE CHAIN REMARK 500 14 TYR A 162 0.07 SIDE CHAIN REMARK 500 14 TYR A 169 0.07 SIDE CHAIN REMARK 500 14 ARG A 208 0.22 SIDE CHAIN REMARK 500 15 ARG A 148 0.12 SIDE CHAIN REMARK 500 15 TYR A 226 0.07 SIDE CHAIN REMARK 500 17 TYR A 163 0.11 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 61 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FKC RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN (MUTANT E200K) FRAGMENT REMARK 900 90-231 REMARK 900 RELATED ID: 1FO7 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN MUTANT E200K FRAGMENT 90 REMARK 900 -231 REMARK 900 RELATED ID: 1I4M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN PRION PROTEIN REMARK 900 REVEALS AMECHANISM FOR OLIGOMERIZATION REMARK 900 RELATED ID: 1QLX RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN REMARK 900 RELATED ID: 1QLZ RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN REMARK 900 RELATED ID: 1QM0 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 90-230 REMARK 900 RELATED ID: 1QM1 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 90-230 REMARK 900 RELATED ID: 1QM2 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 121-230 REMARK 900 RELATED ID: 1QM3 RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN FRAGMENT 121-230 REMARK 999 REMARK 999 SEQUENCE REMARK 999 2 RESIDUES (GLY SER) INSERTED AT THE N-TERMINUS REMARK 999 MET166 AND GLU221 REPLACED AGAINST CYS DBREF 1H0L A 119 120 PDB 1H0L 1H0L 119 120 DBREF 1H0L A 121 230 UNP P04156 PRIO_HUMAN 121 230 SEQADV 1H0L CYS A 166 UNP P04156 MET 166 ENGINEERED MUTATION SEQADV 1H0L CYS A 221 UNP P04156 GLU 221 ENGINEERED MUTATION SEQRES 1 A 112 GLY SER VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 2 A 112 SER ALA MET SER ARG PRO ILE ILE HIS PHE GLY SER ASP SEQRES 3 A 112 TYR GLU ASP ARG TYR TYR ARG GLU ASN MET HIS ARG TYR SEQRES 4 A 112 PRO ASN GLN VAL TYR TYR ARG PRO CYS ASP GLU TYR SER SEQRES 5 A 112 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 6 A 112 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 7 A 112 ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG VAL SEQRES 8 A 112 VAL GLU GLN MET CYS ILE THR GLN TYR GLU ARG CYS SER SEQRES 9 A 112 GLN ALA TYR TYR GLN ARG GLY SER HELIX 1 H1 ASP A 144 MET A 154 1 11 HELIX 2 H2 ASN A 173 LYS A 194 1 22 HELIX 3 H3 GLU A 200 ARG A 228 1 29 SHEET 1 S1 2 TYR A 128 GLY A 131 0 SHEET 2 S1 2 VAL A 161 ARG A 164 -1 N TYR A 128 O VAL A 161 SSBOND 1 CYS A 166 CYS A 221 1555 1555 2.04 SSBOND 2 CYS A 179 CYS A 214 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1