HEADER ELECTRON TRANSPORT 19-JUL-02 1H1O TITLE ACIDITHIOBACILLUS FERROOXIDANS CYTOCHROME C4 STRUCTURE TITLE 2 SUPPORTS A COMPLEX-INDUCED TUNING OF ELECTRON TRANSFER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-552; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C552, CYTOCHROME C4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_TAXID: 920; SOURCE 4 ATCC: 33020 KEYWDS ELECTRON TRANSPORT, C4, CYTOCHROME, ELECTRON TRANSFER, HEME EXPDTA X-RAY DIFFRACTION AUTHOR C.ABERGEL,W.NITSCHKE,G.MALARTE,M.BRUSCHI,J.-M.CLAVERIE, AUTHOR 2 M.-T.GUIDICI-ORTICONI REVDAT 3 12-OCT-11 1H1O 1 REMARK HETSYN FORMUL VERSN REVDAT 2 24-FEB-09 1H1O 1 VERSN REVDAT 1 17-JUL-03 1H1O 0 JRNL AUTH C.ABERGEL,W.NITSCHKE,G.MALARTE,M.BRUSCHI, JRNL AUTH 2 J.-M.CLAVERIE,M.-T.GUIDICI-ORTICONI JRNL TITL THE STRUCTURE OF ACIDITHIOBACILLUS FERROOXIDANS JRNL TITL 2 C(4)-CYTOCHROME. A MODEL FOR COMPLEX-INDUCED JRNL TITL 3 ELECTRON TRANSFER TUNING JRNL REF STRUCTURE V. 11 547 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12737820 JRNL DOI 10.1016/S0969-2126(03)00072-8 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2693270.24 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.9 REMARK 3 FREE R VALUE TEST SET COUNT : 2504 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3728 REMARK 3 BIN R VALUE (WORKING SET) : 0.294 REMARK 3 BIN FREE R VALUE : 0.326 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.7 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 402 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 194 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.03 REMARK 3 B22 (A**2) : 7.03 REMARK 3 B33 (A**2) : -14.06 REMARK 3 B12 (A**2) : 6.17 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.5 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.7 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.84 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.28 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.14 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.90 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.75 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.364664 REMARK 3 BSOL : 57.9213 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : HEM.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : HEM.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1 - 11 IN THE FIRST REMARK 3 MOLECULE AND 201 - 212 IN THE SECOND MOLECULE ARE DESORDERED REMARK 4 REMARK 4 1H1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-02. REMARK 100 THE PDBE ID CODE IS EBI-11141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : BM30A; ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.74; 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 0.1M PH 6.5, PEG MME 30%, REMARK 280 10MM ZINC SULFATE, 5% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.88933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.77867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.88933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.77867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.88933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 99.77867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.88933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.77867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2053 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2112 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2115 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 BELONGS TO THE CLASS C4 FAMILY OF CYTOCHROMES WITH REMARK 400 TWO BOUND HEME MOLECULES PER MOLECULE OF PROTEIN. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 TYR A 10 REMARK 465 ARG A 11 REMARK 465 VAL B 201 REMARK 465 GLY B 202 REMARK 465 SER B 203 REMARK 465 ALA B 204 REMARK 465 ASP B 205 REMARK 465 ALA B 206 REMARK 465 PRO B 207 REMARK 465 ALA B 208 REMARK 465 PRO B 209 REMARK 465 TYR B 210 REMARK 465 ARG B 211 REMARK 465 VAL B 212 REMARK 465 ARG B 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 313 N GLN B 315 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2032 O HOH B 2032 4665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 214 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 27.00 -79.67 REMARK 500 THR A 23 -42.41 -27.64 REMARK 500 ASP A 26 -172.01 -61.02 REMARK 500 HIS A 53 13.12 57.97 REMARK 500 ASP A 126 41.26 -140.24 REMARK 500 ALA A 130 126.19 -175.90 REMARK 500 ASN A 158 114.40 -162.24 REMARK 500 ASP B 215 -16.89 129.45 REMARK 500 MET B 222 -147.05 -102.36 REMARK 500 THR B 223 -6.15 -50.13 REMARK 500 ILE B 295 -117.16 -141.15 REMARK 500 LYS B 296 33.81 70.59 REMARK 500 THR B 312 -72.00 -7.14 REMARK 500 ASN B 313 -74.68 -87.50 REMARK 500 GLU B 314 -4.82 -13.06 REMARK 500 ALA B 330 131.52 177.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1388 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 121 OE1 REMARK 620 2 GLU A 121 OE2 53.7 REMARK 620 3 HIS B 239 ND1 136.6 83.1 REMARK 620 4 SO4 B1387 O1 89.8 133.1 122.8 REMARK 620 5 SO4 B1387 O4 74.0 80.4 97.0 59.8 REMARK 620 6 HOH B2068 O 92.4 102.0 101.6 108.6 161.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1184 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM A1184 NA REMARK 620 2 HEM A1184 NB 89.2 REMARK 620 3 MET A 161 SD 93.6 89.0 REMARK 620 4 HIS A 123 NE2 88.7 94.5 175.9 REMARK 620 5 HEM A1184 NC 178.9 90.5 85.3 92.4 REMARK 620 6 HEM A1184 ND 90.3 178.6 89.8 86.8 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1185 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 HEM A1185 NC 89.8 REMARK 620 3 HEM A1185 ND 95.5 90.0 REMARK 620 4 MET A 64 SD 173.2 85.5 89.4 REMARK 620 5 HEM A1185 NA 91.8 178.2 90.6 92.8 REMARK 620 6 HEM A1185 NB 86.3 90.2 178.2 88.8 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1385 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 361 SD REMARK 620 2 HIS B 323 NE2 170.8 REMARK 620 3 HEM B1385 NA 97.4 91.2 REMARK 620 4 HEM B1385 NB 92.2 91.1 90.1 REMARK 620 5 HEM B1385 NC 81.4 90.0 178.7 89.3 REMARK 620 6 HEM B1385 ND 86.2 90.4 90.4 178.4 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1386 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 220 NE2 REMARK 620 2 MET B 264 SD 177.6 REMARK 620 3 HEM B1386 NA 89.3 90.6 REMARK 620 4 HEM B1386 NB 90.2 87.4 89.9 REMARK 620 5 HEM B1386 NC 92.1 87.9 178.5 89.6 REMARK 620 6 HEM B1386 ND 91.4 91.0 90.6 178.3 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1384 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MATURE SEQUENCE WITHOUT SIGNAL PEPTIDE REMARK 999 NEW NAME PROPOSED: CYC4_THIFE DBREF 1H1O A 1 183 UNP P74917 C552_THIFE 48 230 DBREF 1H1O B 201 383 UNP P74917 C552_THIFE 48 230 SEQRES 1 A 183 VAL GLY SER ALA ASP ALA PRO ALA PRO TYR ARG VAL SER SEQRES 2 A 183 SER ASP CYS MET VAL CYS HIS GLY MET THR GLY ARG ASP SEQRES 3 A 183 THR LEU TYR PRO ILE VAL PRO ARG LEU ALA GLY GLN HIS SEQRES 4 A 183 LYS SER TYR MET GLU ALA GLN LEU LYS ALA TYR LYS ASP SEQRES 5 A 183 HIS SER ARG ALA ASP GLN ASN GLY GLU ILE TYR MET TRP SEQRES 6 A 183 PRO VAL ALA GLN ALA LEU ASP SER ALA LYS ILE THR ALA SEQRES 7 A 183 LEU ALA ASP TYR PHE ASN ALA GLN LYS PRO PRO MET GLN SEQRES 8 A 183 SER SER GLY ILE LYS HIS ALA GLY ALA LYS GLU GLY LYS SEQRES 9 A 183 ALA ILE PHE ASN GLN GLY VAL THR ASN GLU GLN ILE PRO SEQRES 10 A 183 ALA CYS MET GLU CYS HIS GLY SER ASP GLY GLN GLY ALA SEQRES 11 A 183 GLY PRO PHE PRO ARG LEU ALA GLY GLN ARG TYR GLY TYR SEQRES 12 A 183 ILE ILE GLN GLN LEU THR TYR PHE HIS ASN GLY THR ARG SEQRES 13 A 183 VAL ASN THR LEU MET ASN GLN ILE ALA LYS ASN ILE THR SEQRES 14 A 183 VAL ALA GLN MET LYS ASP VAL ALA ALA TYR LEU SER SER SEQRES 15 A 183 LEU SEQRES 1 B 183 VAL GLY SER ALA ASP ALA PRO ALA PRO TYR ARG VAL SER SEQRES 2 B 183 SER ASP CYS MET VAL CYS HIS GLY MET THR GLY ARG ASP SEQRES 3 B 183 THR LEU TYR PRO ILE VAL PRO ARG LEU ALA GLY GLN HIS SEQRES 4 B 183 LYS SER TYR MET GLU ALA GLN LEU LYS ALA TYR LYS ASP SEQRES 5 B 183 HIS SER ARG ALA ASP GLN ASN GLY GLU ILE TYR MET TRP SEQRES 6 B 183 PRO VAL ALA GLN ALA LEU ASP SER ALA LYS ILE THR ALA SEQRES 7 B 183 LEU ALA ASP TYR PHE ASN ALA GLN LYS PRO PRO MET GLN SEQRES 8 B 183 SER SER GLY ILE LYS HIS ALA GLY ALA LYS GLU GLY LYS SEQRES 9 B 183 ALA ILE PHE ASN GLN GLY VAL THR ASN GLU GLN ILE PRO SEQRES 10 B 183 ALA CYS MET GLU CYS HIS GLY SER ASP GLY GLN GLY ALA SEQRES 11 B 183 GLY PRO PHE PRO ARG LEU ALA GLY GLN ARG TYR GLY TYR SEQRES 12 B 183 ILE ILE GLN GLN LEU THR TYR PHE HIS ASN GLY THR ARG SEQRES 13 B 183 VAL ASN THR LEU MET ASN GLN ILE ALA LYS ASN ILE THR SEQRES 14 B 183 VAL ALA GLN MET LYS ASP VAL ALA ALA TYR LEU SER SER SEQRES 15 B 183 LEU HET SO4 A1186 5 HET ZN A1187 1 HET ZN A1188 1 HET ZN A1189 1 HET SO4 B1387 5 HET ZN B1388 1 HET ZN B1389 1 HET ZN B1390 1 HET HEM A1184 43 HET HEM A1185 43 HET HEM B1385 43 HET HEM B1386 43 HET GOL B1384 6 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 ZN 6(ZN 2+) FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *186(H2 O) HELIX 1 1 VAL A 12 ASP A 15 5 4 HELIX 2 2 CYS A 16 GLY A 21 1 6 HELIX 3 3 HIS A 39 ASP A 52 1 14 HELIX 4 4 ASP A 57 MET A 64 1 8 HELIX 5 5 MET A 64 ALA A 70 1 7 HELIX 6 6 ASP A 72 GLN A 86 1 15 HELIX 7 7 GLY A 99 GLY A 110 1 12 HELIX 8 8 THR A 112 GLN A 115 5 4 HELIX 9 9 CYS A 119 GLY A 124 1 6 HELIX 10 10 ARG A 140 GLY A 154 1 15 HELIX 11 11 ASN A 158 LYS A 166 1 9 HELIX 12 12 THR A 169 LEU A 183 1 15 HELIX 13 13 CYS B 216 GLY B 221 1 6 HELIX 14 14 HIS B 239 ASP B 252 1 14 HELIX 15 15 ASP B 257 ALA B 270 1 14 HELIX 16 16 ASP B 272 GLN B 286 1 15 HELIX 17 17 GLY B 299 GLY B 310 1 12 HELIX 18 18 CYS B 319 GLY B 324 1 6 HELIX 19 19 ARG B 340 ASN B 353 1 14 HELIX 20 20 ASN B 358 LYS B 366 1 9 HELIX 21 21 THR B 369 LEU B 383 1 15 LINK NE2 HIS A 20 FE HEM A1185 1555 1555 2.05 LINK FE HEM A1184 SD MET A 161 1555 1555 2.34 LINK FE HEM A1184 NE2 HIS A 123 1555 1555 2.14 LINK FE HEM A1185 SD MET A 64 1555 1555 2.24 LINK ZN ZN A1187 O HOH A2114 1555 1555 2.70 LINK ZN ZN A1189 NE2 HIS A 152 1555 1555 2.30 LINK FE HEM B1385 SD MET B 361 1555 1555 2.46 LINK FE HEM B1385 NE2 HIS B 323 1555 1555 2.07 LINK FE HEM B1386 NE2 HIS B 220 1555 1555 2.06 LINK FE HEM B1386 SD MET B 264 1555 1555 2.29 LINK ZN ZN B1388 O HOH B2068 1555 1555 2.37 LINK ZN ZN B1388 O4 SO4 B1387 1555 1555 2.60 LINK ZN ZN B1388 O1 SO4 B1387 1555 1555 2.16 LINK ZN ZN B1388 ND1 HIS B 239 1555 1555 2.05 LINK ZN ZN B1388 OE2 GLU A 121 1555 1555 2.63 LINK ZN ZN B1388 OE1 GLU A 121 1555 1555 2.16 LINK ZN ZN B1389 NE2 HIS B 352 1555 1555 2.35 CISPEP 1 LYS A 87 PRO A 88 0 0.00 CISPEP 2 LYS B 287 PRO B 288 0 -0.29 SITE 1 AC1 7 ALA A 98 GLY A 99 GLU A 102 ALA A 171 SITE 2 AC1 7 ASP A 175 HOH A2112 HOH A2113 SITE 1 AC2 5 HIS A 39 LYS A 40 ASN A 84 HOH A2114 SITE 2 AC2 5 HOH A2115 SITE 1 AC3 1 HIS A 152 SITE 1 AC4 10 PRO A 117 ALA A 118 GLU A 121 HIS B 239 SITE 2 AC4 10 LYS B 240 SER B 241 ASN B 284 GLY B 331 SITE 3 AC4 10 ZN B1388 HOH B2067 SITE 1 AC5 4 GLU A 121 HIS B 239 SO4 B1387 HOH B2068 SITE 1 AC6 2 HIS B 352 HOH B2069 SITE 1 AC7 2 ARG B 234 HIS B 297 SITE 1 AC8 22 TYR A 42 GLN A 46 PRO A 117 CYS A 119 SITE 2 AC8 22 CYS A 122 HIS A 123 PRO A 134 LEU A 136 SITE 3 AC8 22 TYR A 143 LEU A 148 PHE A 151 ARG A 156 SITE 4 AC8 22 ASN A 158 MET A 161 ILE A 164 ILE A 168 SITE 5 AC8 22 VAL A 176 HEM A1185 HOH A2080 HOH A2093 SITE 6 AC8 22 HOH A2110 HOH A2111 SITE 1 AC9 25 ASP A 15 CYS A 16 CYS A 19 HIS A 20 SITE 2 AC9 25 ILE A 31 PRO A 33 TYR A 42 LEU A 47 SITE 3 AC9 25 TYR A 50 ARG A 55 ASP A 57 ASN A 59 SITE 4 AC9 25 GLY A 60 TYR A 63 MET A 64 VAL A 67 SITE 5 AC9 25 LEU A 79 TYR A 143 GLN A 147 TYR A 150 SITE 6 AC9 25 HEM A1184 HOH A2020 HOH A2042 ILE B 262 SITE 7 AC9 25 TYR B 263 SITE 1 BC1 23 TYR B 242 GLN B 246 ILE B 316 CYS B 319 SITE 2 BC1 23 CYS B 322 HIS B 323 PRO B 332 PHE B 333 SITE 3 BC1 23 PRO B 334 LEU B 336 TYR B 343 GLN B 347 SITE 4 BC1 23 LEU B 348 ARG B 356 ASN B 358 LEU B 360 SITE 5 BC1 23 MET B 361 ILE B 364 VAL B 376 HEM B1386 SITE 6 BC1 23 HOH B2045 HOH B2064 HOH B2065 SITE 1 BC2 24 TYR A 29 ASP B 215 CYS B 216 VAL B 218 SITE 2 BC2 24 CYS B 219 HIS B 220 ILE B 231 PRO B 233 SITE 3 BC2 24 LEU B 235 TYR B 242 LEU B 247 TYR B 250 SITE 4 BC2 24 ARG B 255 ASP B 257 ASN B 259 GLY B 260 SITE 5 BC2 24 TYR B 263 MET B 264 LEU B 279 TYR B 343 SITE 6 BC2 24 GLN B 347 HEM B1385 HOH B2013 HOH B2066 SITE 1 BC3 5 CYS A 122 GLY B 324 SER B 325 GLN B 328 SITE 2 BC3 5 HOH B2063 CRYST1 100.049 100.049 149.668 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009995 0.005771 0.000000 0.00000 SCALE2 0.000000 0.011541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006681 0.00000