HEADER OXIDOREDUCTASE 02-AUG-02 1H2B TITLE CRYSTAL STRUCTURE OF THE ALCOHOL DEHYDROGENASE FROM THE TITLE 2 HYPERTHERMOPHILIC ARCHAEON AEROPYRUM PERNIX AT 1.65A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 56636; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PTRC 99 KEYWDS OXIDOREDUCTASE, ARCHAEA, HYPERTHERMOPHILE, ALCOHOL DEHYDROGENASE KEYWDS 2 OXIDOREDUCTASE, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR J.E.GUY,M.N.ISUPOV,J.A.LITTLECHILD REVDAT 8 16-OCT-24 1H2B 1 REMARK REVDAT 7 13-DEC-23 1H2B 1 LINK REVDAT 6 09-OCT-19 1H2B 1 JRNL REVDAT 5 24-JUL-19 1H2B 1 REMARK REVDAT 4 28-FEB-18 1H2B 1 SOURCE JRNL REVDAT 3 24-FEB-09 1H2B 1 VERSN REVDAT 2 20-DEC-06 1H2B 1 REMARK REVDAT 1 28-AUG-03 1H2B 0 JRNL AUTH J.E.GUY,M.N.ISUPOV,J.A.LITTLECHILD JRNL TITL THE STRUCTURE OF AN ALCOHOL DEHYDROGENASE FROM THE JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEON AEROPYRUM PERNIX. JRNL REF J.MOL.BIOL. V. 331 1041 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12927540 JRNL DOI 10.1016/S0022-2836(03)00857-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.GUY,M.N.ISUPOV,J.A.LITTLECHILD REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 A NOVEL ALCOHOL DEHYDROGENASE FROM THE HYPERTHERMOPHILIC REMARK 1 TITL 3 ARCHAEON AEROPYRUM PERNIX. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 174 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12499562 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 86079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1759 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.546 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1290011189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0704 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1008062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CCP4, MOLREP, SHELXS REMARK 200 STARTING MODEL: PDB ENTRY 1HSZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.75 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.33050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.59300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.33050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.59300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 201.32200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 BIOLOGICALLY ACTIVE UNIT IS TETRAMERIC. REQUIRES ZN COFACTOR REMARK 400 FOR ENZYMATIC ACTIVITY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ILE A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 PHE A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 5 REMARK 465 ASP B 6 REMARK 465 PHE B 7 REMARK 465 SER B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 LEU B 11 REMARK 465 GLY B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2059 O HOH A 2164 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 138.10 -171.15 REMARK 500 ASP A 168 -60.17 -144.62 REMARK 500 ARG A 240 77.13 -119.76 REMARK 500 VAL A 262 -62.02 -120.92 REMARK 500 VAL A 309 -126.40 41.48 REMARK 500 GLN B 70 62.61 37.42 REMARK 500 ASP B 168 -60.67 -143.69 REMARK 500 VAL B 195 59.90 -95.40 REMARK 500 ARG B 240 69.21 -119.08 REMARK 500 VAL B 262 -60.34 -121.45 REMARK 500 VAL B 309 -125.69 41.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2039 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B2054 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1362 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 HIS A 79 NE2 117.5 REMARK 620 3 ASP A 168 OD1 110.6 98.2 REMARK 620 4 OCA A1360 O1 114.3 101.6 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1364 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 CYS A 112 SG 112.2 REMARK 620 3 CYS A 115 SG 101.2 118.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1363 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 332 OD1 REMARK 620 2 HIS A 334 NE2 100.7 REMARK 620 3 HOH A2311 O 90.2 93.4 REMARK 620 4 GLU B 96 OE1 121.6 102.8 139.8 REMARK 620 5 GLU B 96 OE2 169.4 89.5 86.6 57.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1362 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 54 SG REMARK 620 2 HIS B 79 NE2 118.6 REMARK 620 3 ASP B 168 OD1 110.6 97.8 REMARK 620 4 OCA B1360 O1 113.2 100.1 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1363 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 CYS B 112 SG 114.6 REMARK 620 3 CYS B 115 SG 103.8 114.5 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCA A1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAJ A1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCA B1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAJ B1361 DBREF 1H2B A 1 359 UNP Q9Y9P9 Q9Y9P9 1 359 DBREF 1H2B B 1 359 UNP Q9Y9P9 Q9Y9P9 1 359 SEQRES 1 A 359 MET ARG ILE GLU GLN ASP PHE SER GLN SER LEU GLY VAL SEQRES 2 A 359 GLU ARG LEU LYS ALA ALA ARG LEU HIS GLU TYR ASN LYS SEQRES 3 A 359 PRO LEU ARG ILE GLU ASP VAL ASP TYR PRO ARG LEU GLU SEQRES 4 A 359 GLY ARG PHE ASP VAL ILE VAL ARG ILE ALA GLY ALA GLY SEQRES 5 A 359 VAL CYS HIS THR ASP LEU HIS LEU VAL GLN GLY MET TRP SEQRES 6 A 359 HIS GLU LEU LEU GLN PRO LYS LEU PRO TYR THR LEU GLY SEQRES 7 A 359 HIS GLU ASN VAL GLY TYR ILE GLU GLU VAL ALA GLU GLY SEQRES 8 A 359 VAL GLU GLY LEU GLU LYS GLY ASP PRO VAL ILE LEU HIS SEQRES 9 A 359 PRO ALA VAL THR ASP GLY THR CYS LEU ALA CYS ARG ALA SEQRES 10 A 359 GLY GLU ASP MET HIS CYS GLU ASN LEU GLU PHE PRO GLY SEQRES 11 A 359 LEU ASN ILE ASP GLY GLY PHE ALA GLU PHE MET ARG THR SEQRES 12 A 359 SER HIS ARG SER VAL ILE LYS LEU PRO LYS ASP ILE SER SEQRES 13 A 359 ARG GLU LYS LEU VAL GLU MET ALA PRO LEU ALA ASP ALA SEQRES 14 A 359 GLY ILE THR ALA TYR ARG ALA VAL LYS LYS ALA ALA ARG SEQRES 15 A 359 THR LEU TYR PRO GLY ALA TYR VAL ALA ILE VAL GLY VAL SEQRES 16 A 359 GLY GLY LEU GLY HIS ILE ALA VAL GLN LEU LEU LYS VAL SEQRES 17 A 359 MET THR PRO ALA THR VAL ILE ALA LEU ASP VAL LYS GLU SEQRES 18 A 359 GLU LYS LEU LYS LEU ALA GLU ARG LEU GLY ALA ASP HIS SEQRES 19 A 359 VAL VAL ASP ALA ARG ARG ASP PRO VAL LYS GLN VAL MET SEQRES 20 A 359 GLU LEU THR ARG GLY ARG GLY VAL ASN VAL ALA MET ASP SEQRES 21 A 359 PHE VAL GLY SER GLN ALA THR VAL ASP TYR THR PRO TYR SEQRES 22 A 359 LEU LEU GLY ARG MET GLY ARG LEU ILE ILE VAL GLY TYR SEQRES 23 A 359 GLY GLY GLU LEU ARG PHE PRO THR ILE ARG VAL ILE SER SEQRES 24 A 359 SER GLU VAL SER PHE GLU GLY SER LEU VAL GLY ASN TYR SEQRES 25 A 359 VAL GLU LEU HIS GLU LEU VAL THR LEU ALA LEU GLN GLY SEQRES 26 A 359 LYS VAL ARG VAL GLU VAL ASP ILE HIS LYS LEU ASP GLU SEQRES 27 A 359 ILE ASN ASP VAL LEU GLU ARG LEU GLU LYS GLY GLU VAL SEQRES 28 A 359 LEU GLY ARG ALA VAL LEU ILE PRO SEQRES 1 B 359 MET ARG ILE GLU GLN ASP PHE SER GLN SER LEU GLY VAL SEQRES 2 B 359 GLU ARG LEU LYS ALA ALA ARG LEU HIS GLU TYR ASN LYS SEQRES 3 B 359 PRO LEU ARG ILE GLU ASP VAL ASP TYR PRO ARG LEU GLU SEQRES 4 B 359 GLY ARG PHE ASP VAL ILE VAL ARG ILE ALA GLY ALA GLY SEQRES 5 B 359 VAL CYS HIS THR ASP LEU HIS LEU VAL GLN GLY MET TRP SEQRES 6 B 359 HIS GLU LEU LEU GLN PRO LYS LEU PRO TYR THR LEU GLY SEQRES 7 B 359 HIS GLU ASN VAL GLY TYR ILE GLU GLU VAL ALA GLU GLY SEQRES 8 B 359 VAL GLU GLY LEU GLU LYS GLY ASP PRO VAL ILE LEU HIS SEQRES 9 B 359 PRO ALA VAL THR ASP GLY THR CYS LEU ALA CYS ARG ALA SEQRES 10 B 359 GLY GLU ASP MET HIS CYS GLU ASN LEU GLU PHE PRO GLY SEQRES 11 B 359 LEU ASN ILE ASP GLY GLY PHE ALA GLU PHE MET ARG THR SEQRES 12 B 359 SER HIS ARG SER VAL ILE LYS LEU PRO LYS ASP ILE SER SEQRES 13 B 359 ARG GLU LYS LEU VAL GLU MET ALA PRO LEU ALA ASP ALA SEQRES 14 B 359 GLY ILE THR ALA TYR ARG ALA VAL LYS LYS ALA ALA ARG SEQRES 15 B 359 THR LEU TYR PRO GLY ALA TYR VAL ALA ILE VAL GLY VAL SEQRES 16 B 359 GLY GLY LEU GLY HIS ILE ALA VAL GLN LEU LEU LYS VAL SEQRES 17 B 359 MET THR PRO ALA THR VAL ILE ALA LEU ASP VAL LYS GLU SEQRES 18 B 359 GLU LYS LEU LYS LEU ALA GLU ARG LEU GLY ALA ASP HIS SEQRES 19 B 359 VAL VAL ASP ALA ARG ARG ASP PRO VAL LYS GLN VAL MET SEQRES 20 B 359 GLU LEU THR ARG GLY ARG GLY VAL ASN VAL ALA MET ASP SEQRES 21 B 359 PHE VAL GLY SER GLN ALA THR VAL ASP TYR THR PRO TYR SEQRES 22 B 359 LEU LEU GLY ARG MET GLY ARG LEU ILE ILE VAL GLY TYR SEQRES 23 B 359 GLY GLY GLU LEU ARG PHE PRO THR ILE ARG VAL ILE SER SEQRES 24 B 359 SER GLU VAL SER PHE GLU GLY SER LEU VAL GLY ASN TYR SEQRES 25 B 359 VAL GLU LEU HIS GLU LEU VAL THR LEU ALA LEU GLN GLY SEQRES 26 B 359 LYS VAL ARG VAL GLU VAL ASP ILE HIS LYS LEU ASP GLU SEQRES 27 B 359 ILE ASN ASP VAL LEU GLU ARG LEU GLU LYS GLY GLU VAL SEQRES 28 B 359 LEU GLY ARG ALA VAL LEU ILE PRO HET OCA A1360 10 HET NAJ A1361 44 HET ZN A1362 1 HET ZN A1363 1 HET ZN A1364 1 HET OCA B1360 10 HET NAJ B1361 44 HET ZN B1362 1 HET ZN B1363 1 HETNAM OCA OCTANOIC ACID (CAPRYLIC ACID) HETNAM NAJ NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) HETNAM ZN ZINC ION FORMUL 3 OCA 2(C8 H16 O2) FORMUL 4 NAJ 2(C21 H27 N7 O14 P2) FORMUL 5 ZN 5(ZN 2+) FORMUL 12 HOH *660(H2 O) HELIX 1 1 CYS A 54 GLY A 63 1 10 HELIX 2 2 TRP A 65 GLN A 70 1 6 HELIX 3 3 CYS A 112 ALA A 117 1 6 HELIX 4 4 GLU A 119 CYS A 123 5 5 HELIX 5 5 SER A 144 ARG A 146 5 3 HELIX 6 6 SER A 156 MET A 163 1 8 HELIX 7 7 ALA A 164 ALA A 167 5 4 HELIX 8 8 ASP A 168 ARG A 182 1 15 HELIX 9 9 GLY A 196 THR A 210 1 15 HELIX 10 10 LYS A 220 LEU A 230 1 11 HELIX 11 11 ASP A 241 THR A 250 1 10 HELIX 12 12 SER A 264 THR A 271 1 8 HELIX 13 13 PRO A 293 SER A 300 1 8 HELIX 14 14 ASN A 311 GLN A 324 1 14 HELIX 15 15 GLU A 338 LYS A 348 1 11 HELIX 16 16 CYS B 54 GLN B 62 1 9 HELIX 17 17 TRP B 65 GLN B 70 1 6 HELIX 18 18 CYS B 112 ALA B 117 1 6 HELIX 19 19 GLU B 119 CYS B 123 5 5 HELIX 20 20 SER B 144 ARG B 146 5 3 HELIX 21 21 SER B 156 MET B 163 1 8 HELIX 22 22 ALA B 164 ALA B 167 5 4 HELIX 23 23 ASP B 168 ARG B 182 1 15 HELIX 24 24 GLY B 196 THR B 210 1 15 HELIX 25 25 LYS B 220 LEU B 230 1 11 HELIX 26 26 ASP B 241 THR B 250 1 10 HELIX 27 27 SER B 264 THR B 271 1 8 HELIX 28 28 PRO B 293 GLU B 301 1 9 HELIX 29 29 ASN B 311 GLN B 324 1 14 HELIX 30 30 GLU B 338 LYS B 348 1 11 SHEET 1 AA 3 ARG A 29 GLU A 31 0 SHEET 2 AA 3 ALA A 18 LEU A 21 -1 O ALA A 18 N GLU A 31 SHEET 3 AA 3 TYR A 75 THR A 76 -1 O TYR A 75 N LEU A 21 SHEET 1 AB 5 PHE A 140 THR A 143 0 SHEET 2 AB 5 VAL A 44 GLY A 52 -1 O VAL A 44 N THR A 143 SHEET 3 AB 5 ASN A 81 VAL A 88 -1 O VAL A 82 N ALA A 49 SHEET 4 AB 5 PRO A 100 LEU A 103 -1 O VAL A 101 N GLY A 83 SHEET 5 AB 5 VAL A 148 LYS A 150 -1 O ILE A 149 N ILE A 102 SHEET 1 AC 4 PHE A 140 THR A 143 0 SHEET 2 AC 4 VAL A 44 GLY A 52 -1 O VAL A 44 N THR A 143 SHEET 3 AC 4 ARG A 354 ILE A 358 -1 O LEU A 357 N ALA A 51 SHEET 4 AC 4 VAL A 331 LYS A 335 1 O ASP A 332 N VAL A 356 SHEET 1 AD 6 HIS A 234 ASP A 237 0 SHEET 2 AD 6 THR A 213 ASP A 218 1 O VAL A 214 N HIS A 234 SHEET 3 AD 6 TYR A 189 VAL A 193 1 O VAL A 190 N ILE A 215 SHEET 4 AD 6 VAL A 255 ASP A 260 1 N ASN A 256 O TYR A 189 SHEET 5 AD 6 LEU A 275 ILE A 283 1 N GLY A 276 O VAL A 255 SHEET 6 AD 6 SER A 303 GLY A 306 1 O SER A 303 N LEU A 281 SHEET 1 BA 3 ARG B 29 ASP B 32 0 SHEET 2 BA 3 LYS B 17 LEU B 21 -1 O ALA B 18 N GLU B 31 SHEET 3 BA 3 TYR B 75 THR B 76 -1 O TYR B 75 N LEU B 21 SHEET 1 BB 5 PHE B 140 THR B 143 0 SHEET 2 BB 5 VAL B 44 GLY B 52 -1 O VAL B 44 N THR B 143 SHEET 3 BB 5 ASN B 81 VAL B 88 -1 O VAL B 82 N ALA B 49 SHEET 4 BB 5 PRO B 100 LEU B 103 -1 O VAL B 101 N GLY B 83 SHEET 5 BB 5 VAL B 148 LYS B 150 -1 O ILE B 149 N ILE B 102 SHEET 1 BC 4 PHE B 140 THR B 143 0 SHEET 2 BC 4 VAL B 44 GLY B 52 -1 O VAL B 44 N THR B 143 SHEET 3 BC 4 ARG B 354 ILE B 358 -1 O LEU B 357 N ALA B 51 SHEET 4 BC 4 VAL B 331 LYS B 335 1 O ASP B 332 N VAL B 356 SHEET 1 BD 6 HIS B 234 ASP B 237 0 SHEET 2 BD 6 THR B 213 ASP B 218 1 O VAL B 214 N HIS B 234 SHEET 3 BD 6 TYR B 189 VAL B 193 1 O VAL B 190 N ILE B 215 SHEET 4 BD 6 VAL B 255 ASP B 260 1 N ASN B 256 O TYR B 189 SHEET 5 BD 6 LEU B 275 ILE B 283 1 N GLY B 276 O VAL B 255 SHEET 6 BD 6 SER B 303 GLY B 306 1 O SER B 303 N LEU B 281 SSBOND 1 CYS A 115 CYS A 123 1555 1555 2.01 SSBOND 2 CYS B 115 CYS B 123 1555 1555 2.06 LINK SG CYS A 54 ZN ZN A1362 1555 1555 2.25 LINK NE2 HIS A 79 ZN ZN A1362 1555 1555 2.02 LINK OD1 ASP A 109 ZN ZN A1364 1555 1555 2.24 LINK SG CYS A 112 ZN ZN A1364 1555 1555 2.40 LINK SG CYS A 115 ZN ZN A1364 1555 1555 2.27 LINK OD1 ASP A 168 ZN ZN A1362 1555 1555 2.12 LINK OD1 ASP A 332 ZN ZN A1363 1555 1555 2.02 LINK NE2 HIS A 334 ZN ZN A1363 1555 1555 2.09 LINK O1 OCA A1360 ZN ZN A1362 1555 1555 1.94 LINK ZN ZN A1363 O HOH A2311 1555 1555 1.95 LINK ZN ZN A1363 OE1 GLU B 96 1555 3655 2.20 LINK ZN ZN A1363 OE2 GLU B 96 1555 3655 2.27 LINK SG CYS B 54 ZN ZN B1362 1555 1555 2.26 LINK NE2 HIS B 79 ZN ZN B1362 1555 1555 2.07 LINK OD1 ASP B 109 ZN ZN B1363 1555 1555 2.36 LINK SG CYS B 112 ZN ZN B1363 1555 1555 2.36 LINK SG CYS B 115 ZN ZN B1363 1555 1555 2.26 LINK OD1 ASP B 168 ZN ZN B1362 1555 1555 2.05 LINK O1 OCA B1360 ZN ZN B1362 1555 1555 1.94 CISPEP 1 LEU A 73 PRO A 74 0 -1.38 CISPEP 2 LEU B 73 PRO B 74 0 -6.26 SITE 1 AC1 6 CYS A 54 THR A 56 HIS A 79 ASP A 168 SITE 2 AC1 6 OCA A1360 NAJ A1361 SITE 1 AC2 4 ASP A 332 HIS A 334 HOH A2311 GLU B 96 SITE 1 AC3 4 ASP A 109 CYS A 112 CYS A 115 CYS A 123 SITE 1 AC4 5 CYS B 54 HIS B 79 ASP B 168 OCA B1360 SITE 2 AC4 5 NAJ B1361 SITE 1 AC5 4 ASP B 109 CYS B 112 CYS B 115 CYS B 123 SITE 1 AC6 10 CYS A 54 THR A 56 HIS A 79 PHE A 128 SITE 2 AC6 10 LEU A 131 ASP A 168 ARG A 277 SER A 299 SITE 3 AC6 10 NAJ A1361 ZN A1362 SITE 1 AC7 38 CYS A 54 HIS A 55 THR A 56 HIS A 59 SITE 2 AC7 38 ASP A 168 THR A 172 GLY A 194 VAL A 195 SITE 3 AC7 38 GLY A 196 GLY A 197 LEU A 198 ASP A 218 SITE 4 AC7 38 VAL A 219 LYS A 223 ALA A 238 PHE A 261 SITE 5 AC7 38 VAL A 262 THR A 267 TYR A 270 VAL A 284 SITE 6 AC7 38 GLY A 285 TYR A 286 ILE A 298 SER A 307 SITE 7 AC7 38 LEU A 308 VAL A 309 LEU A 346 ARG A 354 SITE 8 AC7 38 OCA A1360 ZN A1362 HOH A2206 HOH A2225 SITE 9 AC7 38 HOH A2305 HOH A2306 HOH A2307 HOH A2308 SITE 10 AC7 38 HOH A2309 HOH A2310 SITE 1 AC8 7 CYS B 54 THR B 56 HIS B 79 PHE B 128 SITE 2 AC8 7 ASP B 168 NAJ B1361 ZN B1362 SITE 1 AC9 38 CYS B 54 HIS B 55 THR B 56 HIS B 59 SITE 2 AC9 38 ASP B 168 THR B 172 GLY B 194 VAL B 195 SITE 3 AC9 38 GLY B 196 GLY B 197 LEU B 198 ASP B 218 SITE 4 AC9 38 VAL B 219 LYS B 223 ALA B 238 PHE B 261 SITE 5 AC9 38 VAL B 262 THR B 267 TYR B 270 VAL B 284 SITE 6 AC9 38 GLY B 285 TYR B 286 ILE B 298 SER B 307 SITE 7 AC9 38 LEU B 308 VAL B 309 LEU B 346 ARG B 354 SITE 8 AC9 38 OCA B1360 ZN B1362 HOH B2241 HOH B2271 SITE 9 AC9 38 HOH B2344 HOH B2345 HOH B2346 HOH B2347 SITE 10 AC9 38 HOH B2348 HOH B2349 CRYST1 100.661 103.186 67.521 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014810 0.00000 MTRIX1 1 0.111310 0.993720 0.011200 89.60703 1 MTRIX2 1 0.993780 -0.111320 0.000440 -99.93110 1 MTRIX3 1 0.001690 0.011080 -0.999940 -39.25529 1