HEADER VIRUS/VIRAL PROTEIN 06-AUG-02 1H2D TITLE EBOLA VIRUS MATRIX PROTEIN VP40 N-TERMINAL DOMAIN IN COMPLEX WITH RNA TITLE 2 (LOW-RESOLUTION VP40[31-212] VARIANT). COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN VP40; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 31-212; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: VP40[31-212] VARIANT; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*UP*GP*AP)-3'; COMPND 9 CHAIN: R, S; COMPND 10 OTHER_DETAILS: RIBONUCLEOTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_TAXID: 205488; SOURCE 4 STRAIN: ZAIRE MAYINGA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 OTHER_DETAILS: MRNA STOP-CODON SEQUENCE, BIOCHEMICAL SYNTHESIS BY SOURCE 11 THE EXPRESSION HOST AND UPTAKE BY THE PROTEIN DURING OVEREXPRESSION KEYWDS VIRUS/VIRAL PROTEIN, FILOVIRUS, EBOLA VIRUS, MATRIX PROTEIN VP40, KEYWDS 2 ASSEMBLY, BUDDING, VIRUS-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.X.GOMIS-RUTH,A.DESSEN,A.BRACHER,H.D.KLENK,W.WEISSENHORN REVDAT 4 13-DEC-23 1H2D 1 REMARK REVDAT 3 08-MAY-19 1H2D 1 REMARK REVDAT 2 24-FEB-09 1H2D 1 VERSN REVDAT 1 10-APR-03 1H2D 0 JRNL AUTH F.X.GOMIS-RUTH,A.DESSEN,J.TIMMINS,A.BRACHER,L.KOLESNIKOWA, JRNL AUTH 2 S.BECKER,H.D.KLENK,W.WEISSENHORN JRNL TITL THE MATRIX PROTEIN VP40 FROM EBOLA VIRUS OCTAMERIZES INTO JRNL TITL 2 PORE-LIKE STRUCTURES WITH SPECIFIC RNA BINDING PROPERTIES JRNL REF STRUCTURE V. 11 423 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12679020 JRNL DOI 10.1016/S0969-2126(03)00050-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.DESSEN,V.VOLCHKOV,O.DOLNIK,H.D.KLENK,W.WEISSENHORN REMARK 1 TITL CRYSTAL STRUCTURE OF THE MATRIX PROTEIN VP40 FROM EBOLA REMARK 1 TITL 2 VIRUS REMARK 1 REF EMBO J. V. 19 4228 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 10944105 REMARK 1 DOI 10.1093/EMBOJ/19.16.4228 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 13004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.306 REMARK 3 R VALUE (WORKING SET) : 0.305 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1906 REMARK 3 NUCLEIC ACID ATOMS : 132 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.04000 REMARK 3 B22 (A**2) : 3.04000 REMARK 3 B33 (A**2) : -4.56000 REMARK 3 B12 (A**2) : 1.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.568 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.357 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.369 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.547 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 33% OF THE PROTEIN RESIDUES ARE REMARK 3 DISORDERED, ACCOUNTING FOR VERY HIGH R-VALUES. REMARK 4 REMARK 4 1H2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1290011205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST, AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1H2C REMARK 200 REMARK 200 REMARK: PROTEIN DIMER USED AS SEARCH MODEL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL OF PROTEIN (13 MG/ML) AND 1 UL OF REMARK 280 WELL SOLUTION (100 MM NA-ACETATE PH4.6, 35 % MPD, 4 % GLYCEROL) REMARK 280 .HANGING DROP., PH 4.60, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.45333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.72667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 159.45333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.72667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 159.45333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 79.72667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 159.45333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.72667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY RELEVANT UNIT COMPRISES AN REMARK 300 OCTAMEROF THE PROTEIN WHICH IS IN COMPLEX WITH REMARK 300 RNA IN THISENTRY MAKING AN HEXADECAMER. SEE REMARK REMARK 300 400 BELOW REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 159.45333 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 159.45333 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE BIOLOGICALLY RELEVANT OLIGOMER IS A HOMOOCTAMER AS REMARK 400 CREATED BY THE CRYSTALLOGRAPHIC 222 SYMMETRY INCLUDED IN REMARK 400 THE OVERALL P6(2)22 CRYSTAL SYMMETRY. THE PRESENTLY REMARK 400 DEPOSITED ASYMMETRIC UNIT CONTAINS TWO CHEMICALLY IDENTICAL REMARK 400 PROTEIN CHAINS (A AND B), EACH OF THEM WITH AN ASSOCIATED REMARK 400 RNA TRINUCLEOTIDE (CHAINS R AND S). WITH CRYSTALLOGRAPHIC REMARK 400 222 SYMMETRY, THE BIOLOGICALLY RELEVANT OCTAMER IS MADE. REMARK 400 THE STRUCTURE IS EQUIVALENT (THOUGH TO LOWER RESOLUTION AND REMARK 400 LESS WELL REFINED) TO ENTRY 1H2C. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 31 REMARK 465 SER A 32 REMARK 465 ASN A 33 REMARK 465 THR A 34 REMARK 465 GLY A 35 REMARK 465 PHE A 36 REMARK 465 LEU A 37 REMARK 465 THR A 38 REMARK 465 PRO A 39 REMARK 465 GLU A 40 REMARK 465 SER A 41 REMARK 465 VAL A 42 REMARK 465 ASN A 43 REMARK 465 GLY A 44 REMARK 465 ASP A 45 REMARK 465 THR A 46 REMARK 465 PRO A 47 REMARK 465 SER A 48 REMARK 465 ASN A 49 REMARK 465 PRO A 50 REMARK 465 LEU A 51 REMARK 465 ARG A 52 REMARK 465 PRO A 53 REMARK 465 ILE A 54 REMARK 465 ALA A 55 REMARK 465 ASP A 56 REMARK 465 ASP A 57 REMARK 465 THR A 58 REMARK 465 ILE A 59 REMARK 465 ASP A 60 REMARK 465 HIS A 61 REMARK 465 ALA A 62 REMARK 465 SER A 63 REMARK 465 HIS A 64 REMARK 465 THR A 65 REMARK 465 PRO A 66 REMARK 465 GLY A 67 REMARK 465 SER A 68 REMARK 465 THR A 192 REMARK 465 ASP A 193 REMARK 465 ASP A 194 REMARK 465 THR A 195 REMARK 465 PRO A 196 REMARK 465 THR A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 ASN A 200 REMARK 465 GLY A 201 REMARK 465 ALA A 202 REMARK 465 LEU A 203 REMARK 465 ARG A 204 REMARK 465 PRO A 205 REMARK 465 GLY A 206 REMARK 465 ILE A 207 REMARK 465 SER A 208 REMARK 465 PHE A 209 REMARK 465 HIS A 210 REMARK 465 PRO A 211 REMARK 465 LYS A 212 REMARK 465 ASN B 31 REMARK 465 SER B 32 REMARK 465 ASN B 33 REMARK 465 THR B 34 REMARK 465 GLY B 35 REMARK 465 PHE B 36 REMARK 465 LEU B 37 REMARK 465 THR B 38 REMARK 465 PRO B 39 REMARK 465 GLU B 40 REMARK 465 SER B 41 REMARK 465 VAL B 42 REMARK 465 ASN B 43 REMARK 465 GLY B 44 REMARK 465 ASP B 45 REMARK 465 THR B 46 REMARK 465 PRO B 47 REMARK 465 SER B 48 REMARK 465 ASN B 49 REMARK 465 PRO B 50 REMARK 465 LEU B 51 REMARK 465 ARG B 52 REMARK 465 PRO B 53 REMARK 465 ILE B 54 REMARK 465 ALA B 55 REMARK 465 ASP B 56 REMARK 465 ASP B 57 REMARK 465 THR B 58 REMARK 465 ILE B 59 REMARK 465 ASP B 60 REMARK 465 HIS B 61 REMARK 465 ALA B 62 REMARK 465 SER B 63 REMARK 465 HIS B 64 REMARK 465 THR B 65 REMARK 465 PRO B 66 REMARK 465 GLY B 67 REMARK 465 SER B 68 REMARK 465 ASP B 193 REMARK 465 ASP B 194 REMARK 465 THR B 195 REMARK 465 PRO B 196 REMARK 465 THR B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 ASN B 200 REMARK 465 GLY B 201 REMARK 465 ALA B 202 REMARK 465 LEU B 203 REMARK 465 ARG B 204 REMARK 465 PRO B 205 REMARK 465 GLY B 206 REMARK 465 ILE B 207 REMARK 465 SER B 208 REMARK 465 PHE B 209 REMARK 465 HIS B 210 REMARK 465 PRO B 211 REMARK 465 LYS B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 191 CA C O CB CG CD1 CD2 REMARK 470 TRP A 191 NE1 CE2 CE3 CZ2 CZ3 CH2 REMARK 470 THR B 192 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2003 O HOH A 2003 4665 0.65 REMARK 500 O HOH A 2032 O HOH A 2032 4665 0.67 REMARK 500 O HOH A 2001 O HOH A 2001 4665 0.72 REMARK 500 CL CL A 1201 CL CL A 1201 10665 1.55 REMARK 500 CL CL B 1202 CL CL B 1202 11556 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U R 1 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 U R 1 O4' - C1' - N1 ANGL. DEV. = 7.8 DEGREES REMARK 500 U R 1 C6 - N1 - C1' ANGL. DEV. = -9.7 DEGREES REMARK 500 U R 1 C2 - N1 - C1' ANGL. DEV. = 10.0 DEGREES REMARK 500 U S 1 C1' - O4' - C4' ANGL. DEV. = -8.1 DEGREES REMARK 500 U S 1 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 U S 1 O4' - C1' - N1 ANGL. DEV. = 8.5 DEGREES REMARK 500 U S 1 C6 - N1 - C1' ANGL. DEV. = -9.2 DEGREES REMARK 500 U S 1 C2 - N1 - C1' ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 77 -167.93 -172.12 REMARK 500 LEU A 88 127.88 -39.44 REMARK 500 LYS A 90 148.85 -173.48 REMARK 500 ALA A 101 155.07 172.59 REMARK 500 PHE A 125 -158.34 -145.57 REMARK 500 THR A 129 27.54 -68.45 REMARK 500 ASN A 130 59.96 179.99 REMARK 500 PRO A 140 -160.36 -66.80 REMARK 500 ALA A 188 92.00 -65.25 REMARK 500 ALA A 189 115.98 -12.23 REMARK 500 THR A 190 165.19 86.82 REMARK 500 LYS B 86 49.20 34.18 REMARK 500 VAL B 87 59.41 -143.93 REMARK 500 LYS B 90 151.62 174.88 REMARK 500 ALA B 128 -70.83 -46.35 REMARK 500 ASN B 130 58.39 149.70 REMARK 500 PRO B 140 -168.99 -68.38 REMARK 500 LEU B 149 -28.42 -37.46 REMARK 500 PRO B 165 97.39 -58.56 REMARK 500 ALA B 189 122.90 -171.95 REMARK 500 THR B 190 60.38 -70.00 REMARK 500 TRP B 191 -172.61 -173.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2001 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A2002 DISTANCE = 10.53 ANGSTROMS REMARK 525 HOH A2003 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2005 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B2005 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B2008 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH B2009 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH B2010 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2015 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B2037 DISTANCE = 6.58 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H2C RELATED DB: PDB REMARK 900 EBOLA VIRUS MATRIX PROTEIN VP40 N-TERMINAL DOMAIN IN COMPLEX WITH REMARK 900 RNA (HIGH-RESOLUTION VP40[55-194] VARIANT). DBREF 1H2D A 31 212 UNP Q05128 VP40_EBOZM 31 212 DBREF 1H2D B 31 212 UNP Q05128 VP40_EBOZM 31 212 DBREF 1H2D R 1 3 PDB 1H2D 1H2D 1 3 DBREF 1H2D S 1 3 PDB 1H2D 1H2D 1 3 SEQRES 1 A 182 ASN SER ASN THR GLY PHE LEU THR PRO GLU SER VAL ASN SEQRES 2 A 182 GLY ASP THR PRO SER ASN PRO LEU ARG PRO ILE ALA ASP SEQRES 3 A 182 ASP THR ILE ASP HIS ALA SER HIS THR PRO GLY SER VAL SEQRES 4 A 182 SER SER ALA PHE ILE LEU GLU ALA MET VAL ASN VAL ILE SEQRES 5 A 182 SER GLY PRO LYS VAL LEU MET LYS GLN ILE PRO ILE TRP SEQRES 6 A 182 LEU PRO LEU GLY VAL ALA ASP GLN LYS THR TYR SER PHE SEQRES 7 A 182 ASP SER THR THR ALA ALA ILE MET LEU ALA SER TYR THR SEQRES 8 A 182 ILE THR HIS PHE GLY LYS ALA THR ASN PRO LEU VAL ARG SEQRES 9 A 182 VAL ASN ARG LEU GLY PRO GLY ILE PRO ASP HIS PRO LEU SEQRES 10 A 182 ARG LEU LEU ARG ILE GLY ASN GLN ALA PHE LEU GLN GLU SEQRES 11 A 182 PHE VAL LEU PRO PRO VAL GLN LEU PRO GLN TYR PHE THR SEQRES 12 A 182 PHE ASP LEU THR ALA LEU LYS LEU ILE THR GLN PRO LEU SEQRES 13 A 182 PRO ALA ALA THR TRP THR ASP ASP THR PRO THR GLY SER SEQRES 14 A 182 ASN GLY ALA LEU ARG PRO GLY ILE SER PHE HIS PRO LYS SEQRES 1 B 182 ASN SER ASN THR GLY PHE LEU THR PRO GLU SER VAL ASN SEQRES 2 B 182 GLY ASP THR PRO SER ASN PRO LEU ARG PRO ILE ALA ASP SEQRES 3 B 182 ASP THR ILE ASP HIS ALA SER HIS THR PRO GLY SER VAL SEQRES 4 B 182 SER SER ALA PHE ILE LEU GLU ALA MET VAL ASN VAL ILE SEQRES 5 B 182 SER GLY PRO LYS VAL LEU MET LYS GLN ILE PRO ILE TRP SEQRES 6 B 182 LEU PRO LEU GLY VAL ALA ASP GLN LYS THR TYR SER PHE SEQRES 7 B 182 ASP SER THR THR ALA ALA ILE MET LEU ALA SER TYR THR SEQRES 8 B 182 ILE THR HIS PHE GLY LYS ALA THR ASN PRO LEU VAL ARG SEQRES 9 B 182 VAL ASN ARG LEU GLY PRO GLY ILE PRO ASP HIS PRO LEU SEQRES 10 B 182 ARG LEU LEU ARG ILE GLY ASN GLN ALA PHE LEU GLN GLU SEQRES 11 B 182 PHE VAL LEU PRO PRO VAL GLN LEU PRO GLN TYR PHE THR SEQRES 12 B 182 PHE ASP LEU THR ALA LEU LYS LEU ILE THR GLN PRO LEU SEQRES 13 B 182 PRO ALA ALA THR TRP THR ASP ASP THR PRO THR GLY SER SEQRES 14 B 182 ASN GLY ALA LEU ARG PRO GLY ILE SER PHE HIS PRO LYS SEQRES 1 R 3 U G A SEQRES 1 S 3 U G A HET CL A1201 1 HET CL B1202 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *109(H2 O) HELIX 1 1 SER A 107 ALA A 118 1 12 HELIX 2 2 LEU A 147 ILE A 152 1 6 HELIX 3 3 GLN A 159 LEU A 163 1 5 HELIX 4 4 SER B 107 ALA B 118 1 12 HELIX 5 5 LEU B 147 ILE B 152 1 6 HELIX 6 6 GLN B 159 LEU B 163 1 5 SHEET 1 AA 6 LEU A 88 ASP A 102 0 SHEET 2 AA 6 SER A 70 ILE A 82 -1 O SER A 71 N ALA A 101 SHEET 3 AA 6 THR A 173 LEU A 186 -1 O ASP A 175 N ASN A 80 SHEET 4 AA 6 TYR A 120 PHE A 125 -1 O TYR A 120 N LEU A 176 SHEET 5 AA 6 LEU A 132 ARG A 137 -1 O LEU A 132 N PHE A 125 SHEET 6 AA 6 ASN A 154 LEU A 158 -1 O GLN A 155 N VAL A 135 SHEET 1 BA 6 LEU B 88 ILE B 94 0 SHEET 2 BA 6 SER B 70 ILE B 82 -1 O ALA B 77 N ILE B 94 SHEET 3 BA 6 THR B 173 LEU B 186 -1 O ASP B 175 N ASN B 80 SHEET 4 BA 6 TYR B 120 PHE B 125 -1 O TYR B 120 N LEU B 176 SHEET 5 BA 6 LEU B 132 ARG B 137 -1 O LEU B 132 N PHE B 125 SHEET 6 BA 6 ASN B 154 LEU B 158 -1 O GLN B 155 N VAL B 135 SHEET 1 BB 3 LEU B 88 ILE B 94 0 SHEET 2 BB 3 SER B 70 ILE B 82 -1 O ALA B 77 N ILE B 94 SHEET 3 BB 3 PRO B 97 ASP B 102 -1 N LEU B 98 O PHE B 73 CRYST1 79.610 79.610 239.180 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012561 0.007252 0.000000 0.00000 SCALE2 0.000000 0.014504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004181 0.00000