HEADER NUCLEAR PROTEIN 16-AUG-02 1H2T TITLE STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING-COMPLEX (CBC) IN COMPLEX TITLE 2 WITH A CAP ANALOGUE M7GPPPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 80 KDA NUCLEAR CAP BINDING PROTEIN; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: MIF4G DOMAIN, RESIDUES 20-653,701-790; COMPND 5 SYNONYM: NCBP 80 KDA SUBUNIT, CBP80; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DELETION OF THE FIRST 19 RESIDUES IN N-TERMINAL AND COMPND 9 DELETION OF RESIDUES 653-701 REPLACED BY A GLYCINE, ENGINEERED COMPND 10 MUTATION ALA 479 SER; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: 20 KDA NUCLEAR CAP BINDING PROTEIN; COMPND 13 CHAIN: Z; COMPND 14 SYNONYM: CBP20, NCBP 20 KDA SUBUNIT, NCBP INTERACTING PROTEIN 1, COMPND 15 NIP1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS M7GCAP, CAP-BINDING-COMPLEX, RNP DOMAIN, MIF4G DOMAIN, RNA KEYWDS 2 MATURATION, RNA EXPORT, NUCLEAR PROTEIN, RNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.MAZZA,A.SEGREF,I.W.MATTAJ,S.CUSACK REVDAT 6 13-DEC-23 1H2T 1 REMARK REVDAT 5 03-APR-19 1H2T 1 SOURCE LINK REVDAT 4 23-AUG-17 1H2T 1 REMARK REVDAT 3 24-FEB-09 1H2T 1 VERSN REVDAT 2 05-DEC-02 1H2T 1 REMARK REVDAT 1 17-OCT-02 1H2T 0 JRNL AUTH C.MAZZA,A.SEGREF,I.W.MATTAJ,S.CUSACK JRNL TITL LARGE-SCALE INDUCED FIT RECOGNITION OF AN M(7)GPPPG CAP JRNL TITL 2 ANALOGUE BY THE HUMAN NUCLEAR CAP-BINDING COMPLEX JRNL REF EMBO J. V. 21 5548 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12374755 JRNL DOI 10.1093/EMBOJ/CDF538 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MAZZA,A.SEGREF,I.MATTAJ,S.CUSACK REMARK 1 TITL CO-CRYSTALLIZATION OF THE HUMAN NUCLEAR CAP-BINDING COMPLEX REMARK 1 TITL 2 WITH A M7GPPPG CAP ANALOGUE USING PROTEIN ENGINEERING REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 2194 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12454499 REMARK 1 DOI 10.1107/S0907444902015445 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2842357.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 68137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3419 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10454 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 577 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.75000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : 7.51000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.400 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.570 ; 4.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 55.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-MULTI-ENDO.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ATP_GTP.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA-MULTI-ENDO.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : ATP_GTP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 20 - 28 AND 528 - 537 FROM REMARK 3 CHAIN C ARE DISORDERED. RESIDUES 1 - 5 AND 151 - 156 FROM CHAIN REMARK 3 Z ARE DISORDERED. REMARK 4 REMARK 4 1H2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1290011235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 TO 1 % PEG 4000, 100 MM MES PH6, REMARK 280 75 TO 100 MM MAGNESIUM FORMATE, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.77000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.54000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.54000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE COMPLEX IS A HETERODIMER FORMED BY REMARK 300 CHAINS CAND Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE CAP-BINDING PROTEIN (CBC) COMPLEX IS AN HETERODIMER REMARK 400 OF CBP80 AND CBP20. REMARK 400 REMARK 400 CHAIN C ENGINEERED DELETION OF THE FIRST 19 RESIDUES IN N-TERMINAL REMARK 400 AND DELETION OF RESIDUES 653-701 REPLACED BY A GLYCINE REMARK 400 REMARK 400 ENGINEERED MUTATION ALA 479 SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 20 REMARK 465 THR C 21 REMARK 465 SER C 22 REMARK 465 ASP C 23 REMARK 465 ALA C 24 REMARK 465 ASN C 25 REMARK 465 GLU C 26 REMARK 465 THR C 27 REMARK 465 GLU C 28 REMARK 465 ASN C 528 REMARK 465 GLN C 529 REMARK 465 ASP C 530 REMARK 465 ASP C 531 REMARK 465 ASP C 532 REMARK 465 ASP C 533 REMARK 465 ASP C 534 REMARK 465 GLU C 535 REMARK 465 GLY C 536 REMARK 465 PHE C 537 REMARK 465 MET Z 1 REMARK 465 SER Z 2 REMARK 465 GLY Z 3 REMARK 465 GLY Z 4 REMARK 465 LYS Z 151 REMARK 465 LEU Z 152 REMARK 465 ALA Z 153 REMARK 465 GLN Z 154 REMARK 465 ASN Z 155 REMARK 465 GLN Z 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO C 527 O REMARK 470 GLY Z 150 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 64 35.77 -141.75 REMARK 500 ASN C 120 57.99 -96.82 REMARK 500 LYS C 188 43.16 -142.31 REMARK 500 SER C 386 -38.32 -142.18 REMARK 500 SER C 460 -110.50 -148.35 REMARK 500 THR C 472 0.50 -69.06 REMARK 500 PRO C 481 66.30 -67.42 REMARK 500 SER C 491 -177.39 -58.06 REMARK 500 SER C 494 53.34 -94.88 REMARK 500 LYS C 511 85.14 52.17 REMARK 500 ASP C 523 33.32 -71.88 REMARK 500 ALA C 555 13.22 -146.93 REMARK 500 ALA C 556 10.40 -64.47 REMARK 500 LYS C 557 -70.85 -74.60 REMARK 500 PHE C 569 44.57 -93.60 REMARK 500 ASP Z 12 57.44 -147.64 REMARK 500 ASP Z 141 173.34 -59.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP Z1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7MG Z1152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H6K RELATED DB: PDB REMARK 900 NUCLEAR CAP BINDING COMPLEX REMARK 900 RELATED ID: 1H2U RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING- COMPLEX (CBC) IN REMARK 900 COMPLEX WIHT A CAP ANALOGUE M7GPPPG REMARK 900 RELATED ID: 1H2V RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING- COMPLEX (CBC) REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION OF THE FIRST 19 RESIDUES IN N-TERMINAL AND DELETION OF REMARK 999 RESIDUES 653-701 REPLACED BY A GLYCINE FOR CHAIN C DBREF 1H2T C 20 652 UNP Q09161 CB80_HUMAN 20 652 DBREF 1H2T C 653 653 PDB 1H2T 1H2T 653 653 DBREF 1H2T C 702 790 UNP Q09161 CB80_HUMAN 702 790 DBREF 1H2T Z 1 156 UNP P52298 CB20_HUMAN 1 156 SEQADV 1H2T SER C 479 UNP Q09161 ALA 479 ENGINEERED MUTATION SEQRES 1 C 723 LYS THR SER ASP ALA ASN GLU THR GLU ASP HIS LEU GLU SEQRES 2 C 723 SER LEU ILE CYS LYS VAL GLY GLU LYS SER ALA CYS SER SEQRES 3 C 723 LEU GLU SER ASN LEU GLU GLY LEU ALA GLY VAL LEU GLU SEQRES 4 C 723 ALA ASP LEU PRO ASN TYR LYS SER LYS ILE LEU ARG LEU SEQRES 5 C 723 LEU CYS THR VAL ALA ARG LEU LEU PRO GLU LYS LEU THR SEQRES 6 C 723 ILE TYR THR THR LEU VAL GLY LEU LEU ASN ALA ARG ASN SEQRES 7 C 723 TYR ASN PHE GLY GLY GLU PHE VAL GLU ALA MET ILE ARG SEQRES 8 C 723 GLN LEU LYS GLU SER LEU LYS ALA ASN ASN TYR ASN GLU SEQRES 9 C 723 ALA VAL TYR LEU VAL ARG PHE LEU SER ASP LEU VAL ASN SEQRES 10 C 723 CYS HIS VAL ILE ALA ALA PRO SER MET VAL ALA MET PHE SEQRES 11 C 723 GLU ASN PHE VAL SER VAL THR GLN GLU GLU ASP VAL PRO SEQRES 12 C 723 GLN VAL ARG ARG ASP TRP TYR VAL TYR ALA PHE LEU SER SEQRES 13 C 723 SER LEU PRO TRP VAL GLY LYS GLU LEU TYR GLU LYS LYS SEQRES 14 C 723 ASP ALA GLU MET ASP ARG ILE PHE ALA ASN THR GLU SER SEQRES 15 C 723 TYR LEU LYS ARG ARG GLN LYS THR HIS VAL PRO MET LEU SEQRES 16 C 723 GLN VAL TRP THR ALA ASP LYS PRO HIS PRO GLN GLU GLU SEQRES 17 C 723 TYR LEU ASP CYS LEU TRP ALA GLN ILE GLN LYS LEU LYS SEQRES 18 C 723 LYS ASP ARG TRP GLN GLU ARG HIS ILE LEU ARG PRO TYR SEQRES 19 C 723 LEU ALA PHE ASP SER ILE LEU CYS GLU ALA LEU GLN HIS SEQRES 20 C 723 ASN LEU PRO PRO PHE THR PRO PRO PRO HIS THR GLU ASP SEQRES 21 C 723 SER VAL TYR PRO MET PRO ARG VAL ILE PHE ARG MET PHE SEQRES 22 C 723 ASP TYR THR ASP ASP PRO GLU GLY PRO VAL MET PRO GLY SEQRES 23 C 723 SER HIS SER VAL GLU ARG PHE VAL ILE GLU GLU ASN LEU SEQRES 24 C 723 HIS CYS ILE ILE LYS SER HIS TRP LYS GLU ARG LYS THR SEQRES 25 C 723 CYS ALA ALA GLN LEU VAL SER TYR PRO GLY LYS ASN LYS SEQRES 26 C 723 ILE PRO LEU ASN TYR HIS ILE VAL GLU VAL ILE PHE ALA SEQRES 27 C 723 GLU LEU PHE GLN LEU PRO ALA PRO PRO HIS ILE ASP VAL SEQRES 28 C 723 MET TYR THR THR LEU LEU ILE GLU LEU CYS LYS LEU GLN SEQRES 29 C 723 PRO GLY SER LEU PRO GLN VAL LEU ALA GLN ALA THR GLU SEQRES 30 C 723 MET LEU TYR MET ARG LEU ASP THR MET ASN THR THR CYS SEQRES 31 C 723 VAL ASP ARG PHE ILE ASN TRP PHE SER HIS HIS LEU SER SEQRES 32 C 723 ASN PHE GLN PHE ARG TRP SER TRP GLU ASP TRP SER ASP SEQRES 33 C 723 CYS LEU SER GLN ASP PRO GLU SER PRO LYS PRO LYS PHE SEQRES 34 C 723 VAL ARG GLU VAL LEU GLU LYS CYS MET ARG LEU SER TYR SEQRES 35 C 723 HIS GLN ARG ILE LEU ASP ILE VAL PRO PRO THR PHE SER SEQRES 36 C 723 ALA LEU CYS PRO SER ASN PRO THR CYS ILE TYR LYS TYR SEQRES 37 C 723 GLY ASP GLU SER SER ASN SER LEU PRO GLY HIS SER VAL SEQRES 38 C 723 ALA LEU CYS LEU ALA VAL ALA PHE LYS SER LYS ALA THR SEQRES 39 C 723 ASN ASP GLU ILE PHE SER ILE LEU LYS ASP VAL PRO ASN SEQRES 40 C 723 PRO ASN GLN ASP ASP ASP ASP ASP GLU GLY PHE SER PHE SEQRES 41 C 723 ASN PRO LEU LYS ILE GLU VAL PHE VAL GLN THR LEU LEU SEQRES 42 C 723 HIS LEU ALA ALA LYS SER PHE SER HIS SER PHE SER ALA SEQRES 43 C 723 LEU ALA LYS PHE HIS GLU VAL PHE LYS THR LEU ALA GLU SEQRES 44 C 723 SER ASP GLU GLY LYS LEU HIS VAL LEU ARG VAL MET PHE SEQRES 45 C 723 GLU VAL TRP ARG ASN HIS PRO GLN MET ILE ALA VAL LEU SEQRES 46 C 723 VAL ASP LYS MET ILE ARG THR GLN ILE VAL ASP CYS ALA SEQRES 47 C 723 ALA VAL ALA ASN TRP ILE PHE SER SER GLU LEU SER ARG SEQRES 48 C 723 ASP PHE THR ARG LEU PHE VAL TRP GLU ILE LEU HIS SER SEQRES 49 C 723 THR ILE ARG LYS MET ASN LYS HIS VAL GLY ALA GLN SER SEQRES 50 C 723 GLU GLN LYS ASN LEU PHE LEU VAL ILE PHE GLN ARG PHE SEQRES 51 C 723 ILE MET ILE LEU THR GLU HIS LEU VAL ARG CYS GLU THR SEQRES 52 C 723 ASP GLY THR SER VAL LEU THR PRO TRP TYR LYS ASN CYS SEQRES 53 C 723 ILE GLU ARG LEU GLN GLN ILE PHE LEU GLN HIS HIS GLN SEQRES 54 C 723 ILE ILE GLN GLN TYR MET VAL THR LEU GLU ASN LEU LEU SEQRES 55 C 723 PHE THR ALA GLU LEU ASP PRO HIS ILE LEU ALA VAL PHE SEQRES 56 C 723 GLN GLN PHE CYS ALA LEU GLN ALA SEQRES 1 Z 156 MET SER GLY GLY LEU LEU LYS ALA LEU ARG SER ASP SER SEQRES 2 Z 156 TYR VAL GLU LEU SER GLN TYR ARG ASP GLN HIS PHE ARG SEQRES 3 Z 156 GLY ASP ASN GLU GLU GLN GLU LYS LEU LEU LYS LYS SER SEQRES 4 Z 156 CYS THR LEU TYR VAL GLY ASN LEU SER PHE TYR THR THR SEQRES 5 Z 156 GLU GLU GLN ILE TYR GLU LEU PHE SER LYS SER GLY ASP SEQRES 6 Z 156 ILE LYS LYS ILE ILE MET GLY LEU ASP LYS MET LYS LYS SEQRES 7 Z 156 THR ALA CYS GLY PHE CYS PHE VAL GLU TYR TYR SER ARG SEQRES 8 Z 156 ALA ASP ALA GLU ASN ALA MET ARG TYR ILE ASN GLY THR SEQRES 9 Z 156 ARG LEU ASP ASP ARG ILE ILE ARG THR ASP TRP ASP ALA SEQRES 10 Z 156 GLY PHE LYS GLU GLY ARG GLN TYR GLY ARG GLY ARG SER SEQRES 11 Z 156 GLY GLY GLN VAL ARG ASP GLU TYR ARG GLN ASP TYR ASP SEQRES 12 Z 156 ALA GLY ARG GLY GLY TYR GLY LYS LEU ALA GLN ASN GLN HET GDP Z1151 28 HET 7MG Z1152 24 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 7MG C11 H18 N5 O8 P FORMUL 5 HOH *365(H2 O) HELIX 1 1 ASP C 29 VAL C 38 1 10 HELIX 2 2 SER C 45 LEU C 79 1 35 HELIX 3 3 LYS C 82 ASN C 97 1 16 HELIX 4 4 ASN C 97 ALA C 118 1 22 HELIX 5 5 ASN C 120 CYS C 137 1 18 HELIX 6 6 ALA C 141 SER C 154 1 14 HELIX 7 7 VAL C 155 GLU C 158 5 4 HELIX 8 8 PRO C 162 SER C 175 1 14 HELIX 9 9 SER C 176 ARG C 206 1 31 HELIX 10 10 HIS C 210 GLN C 215 1 6 HELIX 11 11 GLU C 227 ASP C 242 1 16 HELIX 12 12 ARG C 251 ALA C 255 5 5 HELIX 13 13 PHE C 256 GLU C 262 1 7 HELIX 14 14 ASP C 293 ASP C 297 5 5 HELIX 15 15 SER C 308 TRP C 326 1 19 HELIX 16 16 GLU C 328 SER C 338 1 11 HELIX 17 17 PRO C 346 PHE C 360 1 15 HELIX 18 18 ILE C 368 GLN C 383 1 16 HELIX 19 19 SER C 386 ARG C 401 1 16 HELIX 20 20 LEU C 402 THR C 404 5 3 HELIX 21 21 ASN C 406 ASN C 423 1 18 HELIX 22 22 SER C 429 LEU C 437 5 9 HELIX 23 23 SER C 443 LEU C 459 1 17 HELIX 24 24 TYR C 461 VAL C 469 1 9 HELIX 25 25 PRO C 470 CYS C 477 5 8 HELIX 26 26 GLY C 497 SER C 510 1 14 HELIX 27 27 THR C 513 LEU C 521 1 9 HELIX 28 28 LYS C 522 VAL C 524 5 3 HELIX 29 29 ASN C 540 LEU C 552 1 13 HELIX 30 30 HIS C 553 ALA C 556 5 4 HELIX 31 31 SER C 558 PHE C 569 1 12 HELIX 32 32 PHE C 569 ALA C 577 1 9 HELIX 33 33 SER C 579 ARG C 595 1 17 HELIX 34 34 HIS C 597 THR C 611 1 15 HELIX 35 35 ASP C 615 SER C 625 1 11 HELIX 36 36 SER C 626 SER C 629 5 4 HELIX 37 37 ARG C 634 HIS C 651 1 18 HELIX 38 38 ALA C 702 ASP C 731 1 30 HELIX 39 39 THR C 737 HIS C 754 1 18 HELIX 40 40 HIS C 754 GLN C 759 1 6 HELIX 41 41 TYR C 761 LEU C 769 1 9 HELIX 42 42 ASP C 775 LEU C 788 1 14 HELIX 43 43 LEU Z 6 SER Z 11 1 6 HELIX 44 44 ASP Z 12 GLU Z 16 5 5 HELIX 45 45 ASP Z 28 LYS Z 37 1 10 HELIX 46 46 THR Z 52 SER Z 61 1 10 HELIX 47 47 LYS Z 62 GLY Z 64 5 3 HELIX 48 48 SER Z 90 ILE Z 101 1 12 HELIX 49 49 GLN Z 133 TYR Z 138 5 6 HELIX 50 50 ALA Z 144 GLY Z 147 5 4 SHEET 1 ZA 4 ILE Z 66 LEU Z 73 0 SHEET 2 ZA 4 ALA Z 80 TYR Z 88 -1 N CYS Z 81 O GLY Z 72 SHEET 3 ZA 4 THR Z 41 GLY Z 45 -1 O LEU Z 42 N VAL Z 86 SHEET 4 ZA 4 ARG Z 112 TRP Z 115 -1 O ARG Z 112 N GLY Z 45 SHEET 1 ZB 2 ARG Z 105 LEU Z 106 0 SHEET 2 ZB 2 ARG Z 109 ILE Z 110 -1 O ARG Z 109 N LEU Z 106 LINK O3B GDP Z1151 P 7MG Z1152 1555 1555 1.62 CISPEP 1 LYS C 221 PRO C 222 0 0.91 CISPEP 2 LEU C 362 PRO C 363 0 0.46 SITE 1 AC1 7 GLU C 58 TYR Z 20 ARG Z 127 VAL Z 134 SITE 2 AC1 7 TYR Z 138 7MG Z1152 HOH Z2063 SITE 1 AC2 15 TYR Z 20 ASP Z 22 TYR Z 43 PHE Z 83 SITE 2 AC2 15 ARG Z 112 ASP Z 114 TRP Z 115 ASP Z 116 SITE 3 AC2 15 ARG Z 123 TYR Z 125 ARG Z 127 GLN Z 133 SITE 4 AC2 15 VAL Z 134 GDP Z1151 HOH Z2062 CRYST1 112.780 112.780 158.310 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008867 0.005119 0.000000 0.00000 SCALE2 0.000000 0.010238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006317 0.00000 CONECT 6942 6943 6944 6945 6946 CONECT 6943 6942 CONECT 6944 6942 CONECT 6945 6942 6970 CONECT 6946 6942 6947 CONECT 6947 6946 6948 6949 6950 CONECT 6948 6947 CONECT 6949 6947 CONECT 6950 6947 6951 CONECT 6951 6950 6952 CONECT 6952 6951 6953 6954 CONECT 6953 6952 6958 CONECT 6954 6952 6955 6956 CONECT 6955 6954 CONECT 6956 6954 6957 6958 CONECT 6957 6956 CONECT 6958 6953 6956 6959 CONECT 6959 6958 6960 6969 CONECT 6960 6959 6961 CONECT 6961 6960 6962 CONECT 6962 6961 6963 6969 CONECT 6963 6962 6964 6965 CONECT 6964 6963 CONECT 6965 6963 6966 CONECT 6966 6965 6967 6968 CONECT 6967 6966 CONECT 6968 6966 6969 CONECT 6969 6959 6962 6968 CONECT 6970 6945 6971 6972 6973 CONECT 6971 6970 CONECT 6972 6970 CONECT 6973 6970 6974 CONECT 6974 6973 6975 CONECT 6975 6974 6976 6977 CONECT 6976 6975 6981 CONECT 6977 6975 6978 6979 CONECT 6978 6977 CONECT 6979 6977 6980 6981 CONECT 6980 6979 CONECT 6981 6976 6979 6982 CONECT 6982 6981 6983 6992 CONECT 6983 6982 6984 CONECT 6984 6983 6985 6993 CONECT 6985 6984 6986 6992 CONECT 6986 6985 6987 6988 CONECT 6987 6986 CONECT 6988 6986 6989 CONECT 6989 6988 6990 6991 CONECT 6990 6989 CONECT 6991 6989 6992 CONECT 6992 6982 6985 6991 CONECT 6993 6984 MASTER 350 0 2 50 6 0 6 6 7356 2 52 68 END