HEADER NUCLEAR PROTEIN 16-AUG-02 1H2T TITLE STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING-COMPLEX (CBC) IN COMPLEX TITLE 2 WITH A CAP ANALOGUE M7GPPPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 80 KDA NUCLEAR CAP BINDING PROTEIN; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: MIF4G DOMAIN, RESIDUES 20-653,701-790; COMPND 5 SYNONYM: NCBP 80 KDA SUBUNIT, CBP80; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DELETION OF THE FIRST 19 RESIDUES IN N-TERMINAL AND COMPND 9 DELETION OF RESIDUES 653-701 REPLACED BY A GLYCINE, ENGINEERED COMPND 10 MUTATION ALA 479 SER; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: 20 KDA NUCLEAR CAP BINDING PROTEIN; COMPND 13 CHAIN: Z; COMPND 14 SYNONYM: CBP20, NCBP 20 KDA SUBUNIT, NCBP INTERACTING PROTEIN 1, COMPND 15 NIP1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS M7GCAP, CAP-BINDING-COMPLEX, RNP DOMAIN, MIF4G DOMAIN, RNA KEYWDS 2 MATURATION, RNA EXPORT, NUCLEAR PROTEIN, RNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.MAZZA,A.SEGREF,I.W.MATTAJ,S.CUSACK REVDAT 6 13-DEC-23 1H2T 1 REMARK REVDAT 5 03-APR-19 1H2T 1 SOURCE LINK REVDAT 4 23-AUG-17 1H2T 1 REMARK REVDAT 3 24-FEB-09 1H2T 1 VERSN REVDAT 2 05-DEC-02 1H2T 1 REMARK REVDAT 1 17-OCT-02 1H2T 0 JRNL AUTH C.MAZZA,A.SEGREF,I.W.MATTAJ,S.CUSACK JRNL TITL LARGE-SCALE INDUCED FIT RECOGNITION OF AN M(7)GPPPG CAP JRNL TITL 2 ANALOGUE BY THE HUMAN NUCLEAR CAP-BINDING COMPLEX JRNL REF EMBO J. V. 21 5548 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12374755 JRNL DOI 10.1093/EMBOJ/CDF538 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MAZZA,A.SEGREF,I.MATTAJ,S.CUSACK REMARK 1 TITL CO-CRYSTALLIZATION OF THE HUMAN NUCLEAR CAP-BINDING COMPLEX REMARK 1 TITL 2 WITH A M7GPPPG CAP ANALOGUE USING PROTEIN ENGINEERING REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 2194 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12454499 REMARK 1 DOI 10.1107/S0907444902015445 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2842357.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 68137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3419 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10454 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 577 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.75000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : 7.51000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.400 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.570 ; 4.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 55.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-MULTI-ENDO.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ATP_GTP.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA-MULTI-ENDO.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : ATP_GTP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 20 - 28 AND 528 - 537 FROM REMARK 3 CHAIN C ARE DISORDERED. RESIDUES 1 - 5 AND 151 - 156 FROM CHAIN REMARK 3 Z ARE DISORDERED. REMARK 4 REMARK 4 1H2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1290011235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 TO 1 % PEG 4000, 100 MM MES PH6, REMARK 280 75 TO 100 MM MAGNESIUM FORMATE, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.77000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.54000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.54000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE COMPLEX IS A HETERODIMER FORMED BY REMARK 300 CHAINS CAND Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE CAP-BINDING PROTEIN (CBC) COMPLEX IS AN HETERODIMER REMARK 400 OF CBP80 AND CBP20. REMARK 400 REMARK 400 CHAIN C ENGINEERED DELETION OF THE FIRST 19 RESIDUES IN N-TERMINAL REMARK 400 AND DELETION OF RESIDUES 653-701 REPLACED BY A GLYCINE REMARK 400 REMARK 400 ENGINEERED MUTATION ALA 479 SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 20 REMARK 465 THR C 21 REMARK 465 SER C 22 REMARK 465 ASP C 23 REMARK 465 ALA C 24 REMARK 465 ASN C 25 REMARK 465 GLU C 26 REMARK 465 THR C 27 REMARK 465 GLU C 28 REMARK 465 ASN C 528 REMARK 465 GLN C 529 REMARK 465 ASP C 530 REMARK 465 ASP C 531 REMARK 465 ASP C 532 REMARK 465 ASP C 533 REMARK 465 ASP C 534 REMARK 465 GLU C 535 REMARK 465 GLY C 536 REMARK 465 PHE C 537 REMARK 465 MET Z 1 REMARK 465 SER Z 2 REMARK 465 GLY Z 3 REMARK 465 GLY Z 4 REMARK 465 LYS Z 151 REMARK 465 LEU Z 152 REMARK 465 ALA Z 153 REMARK 465 GLN Z 154 REMARK 465 ASN Z 155 REMARK 465 GLN Z 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO C 527 O REMARK 470 GLY Z 150 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 64 35.77 -141.75 REMARK 500 ASN C 120 57.99 -96.82 REMARK 500 LYS C 188 43.16 -142.31 REMARK 500 SER C 386 -38.32 -142.18 REMARK 500 SER C 460 -110.50 -148.35 REMARK 500 THR C 472 0.50 -69.06 REMARK 500 PRO C 481 66.30 -67.42 REMARK 500 SER C 491 -177.39 -58.06 REMARK 500 SER C 494 53.34 -94.88 REMARK 500 LYS C 511 85.14 52.17 REMARK 500 ASP C 523 33.32 -71.88 REMARK 500 ALA C 555 13.22 -146.93 REMARK 500 ALA C 556 10.40 -64.47 REMARK 500 LYS C 557 -70.85 -74.60 REMARK 500 PHE C 569 44.57 -93.60 REMARK 500 ASP Z 12 57.44 -147.64 REMARK 500 ASP Z 141 173.34 -59.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP Z1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7MG Z1152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H6K RELATED DB: PDB REMARK 900 NUCLEAR CAP BINDING COMPLEX REMARK 900 RELATED ID: 1H2U RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING- COMPLEX (CBC) IN REMARK 900 COMPLEX WIHT A CAP ANALOGUE M7GPPPG REMARK 900 RELATED ID: 1H2V RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING- COMPLEX (CBC) REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION OF THE FIRST 19 RESIDUES IN N-TERMINAL AND DELETION OF REMARK 999 RESIDUES 653-701 REPLACED BY A GLYCINE FOR CHAIN C DBREF 1H2T C 20 652 UNP Q09161 CB80_HUMAN 20 652 DBREF 1H2T C 653 653 PDB 1H2T 1H2T 653 653 DBREF 1H2T C 702 790 UNP Q09161 CB80_HUMAN 702 790 DBREF 1H2T Z 1 156 UNP P52298 CB20_HUMAN 1 156 SEQADV 1H2T SER C 479 UNP Q09161 ALA 479 ENGINEERED MUTATION SEQRES 1 C 723 LYS THR SER ASP ALA ASN GLU THR GLU ASP HIS LEU GLU SEQRES 2 C 723 SER LEU ILE CYS LYS VAL GLY GLU LYS SER ALA CYS SER SEQRES 3 C 723 LEU GLU SER ASN LEU GLU GLY LEU ALA GLY VAL LEU GLU SEQRES 4 C 723 ALA ASP LEU PRO ASN TYR LYS SER LYS ILE LEU ARG LEU SEQRES 5 C 723 LEU CYS THR VAL ALA ARG LEU LEU PRO GLU LYS LEU THR SEQRES 6 C 723 ILE TYR THR THR LEU VAL GLY LEU LEU ASN ALA ARG ASN SEQRES 7 C 723 TYR ASN PHE GLY GLY GLU PHE VAL GLU ALA MET ILE ARG SEQRES 8 C 723 GLN LEU LYS GLU SER LEU LYS ALA ASN ASN TYR ASN GLU SEQRES 9 C 723 ALA VAL TYR LEU VAL ARG PHE LEU SER ASP LEU VAL ASN SEQRES 10 C 723 CYS HIS VAL ILE ALA ALA PRO SER MET VAL ALA MET PHE SEQRES 11 C 723 GLU ASN PHE VAL SER VAL THR GLN GLU GLU ASP VAL PRO SEQRES 12 C 723 GLN VAL ARG ARG ASP TRP TYR VAL TYR ALA PHE LEU SER SEQRES 13 C 723 SER LEU PRO TRP VAL GLY LYS GLU LEU TYR GLU LYS LYS SEQRES 14 C 723 ASP ALA GLU MET ASP ARG ILE PHE ALA ASN THR GLU SER SEQRES 15 C 723 TYR LEU LYS ARG ARG GLN LYS THR HIS VAL PRO MET LEU SEQRES 16 C 723 GLN VAL TRP THR ALA ASP LYS PRO HIS PRO GLN GLU GLU SEQRES 17 C 723 TYR LEU ASP CYS LEU TRP ALA GLN ILE GLN LYS LEU LYS SEQRES 18 C 723 LYS ASP ARG TRP GLN GLU ARG HIS ILE LEU ARG PRO TYR SEQRES 19 C 723 LEU ALA PHE ASP SER ILE LEU CYS GLU ALA LEU GLN HIS SEQRES 20 C 723 ASN LEU PRO PRO PHE THR PRO PRO PRO HIS THR GLU ASP SEQRES 21 C 723 SER VAL TYR PRO MET PRO ARG VAL ILE PHE ARG MET PHE SEQRES 22 C 723 ASP TYR THR ASP ASP PRO GLU GLY PRO VAL MET PRO GLY SEQRES 23 C 723 SER HIS SER VAL GLU ARG PHE VAL ILE GLU GLU ASN LEU SEQRES 24 C 723 HIS CYS ILE ILE LYS SER HIS TRP LYS GLU ARG LYS THR SEQRES 25 C 723 CYS ALA ALA GLN LEU VAL SER TYR PRO GLY LYS ASN LYS SEQRES 26 C 723 ILE PRO LEU ASN TYR HIS ILE VAL GLU VAL ILE PHE ALA SEQRES 27 C 723 GLU LEU PHE GLN LEU PRO ALA PRO PRO HIS ILE ASP VAL SEQRES 28 C 723 MET TYR THR THR LEU LEU ILE GLU LEU CYS LYS LEU GLN SEQRES 29 C 723 PRO GLY SER LEU PRO GLN VAL LEU ALA GLN ALA THR GLU SEQRES 30 C 723 MET LEU TYR MET ARG LEU ASP THR MET ASN THR THR CYS SEQRES 31 C 723 VAL ASP ARG PHE ILE ASN TRP PHE SER HIS HIS LEU SER SEQRES 32 C 723 ASN PHE GLN PHE ARG TRP SER TRP GLU ASP TRP SER ASP SEQRES 33 C 723 CYS LEU SER GLN ASP PRO GLU SER PRO LYS PRO LYS PHE SEQRES 34 C 723 VAL ARG GLU VAL LEU GLU LYS CYS MET ARG LEU SER TYR SEQRES 35 C 723 HIS GLN ARG ILE LEU ASP ILE VAL PRO PRO THR PHE SER SEQRES 36 C 723 ALA LEU CYS PRO SER ASN PRO THR CYS ILE TYR LYS TYR SEQRES 37 C 723 GLY ASP GLU SER SER ASN SER LEU PRO GLY HIS SER VAL SEQRES 38 C 723 ALA LEU CYS LEU ALA VAL ALA PHE LYS SER LYS ALA THR SEQRES 39 C 723 ASN ASP GLU ILE PHE SER ILE LEU LYS ASP VAL PRO ASN SEQRES 40 C 723 PRO ASN GLN ASP ASP ASP ASP ASP GLU GLY PHE SER PHE SEQRES 41 C 723 ASN PRO LEU LYS ILE GLU VAL PHE VAL GLN THR LEU LEU SEQRES 42 C 723 HIS LEU ALA ALA LYS SER PHE SER HIS SER PHE SER ALA SEQRES 43 C 723 LEU ALA LYS PHE HIS GLU VAL PHE LYS THR LEU ALA GLU SEQRES 44 C 723 SER ASP GLU GLY LYS LEU HIS VAL LEU ARG VAL MET PHE SEQRES 45 C 723 GLU VAL TRP ARG ASN HIS PRO GLN MET ILE ALA VAL LEU SEQRES 46 C 723 VAL ASP LYS MET ILE ARG THR GLN ILE VAL ASP CYS ALA SEQRES 47 C 723 ALA VAL ALA ASN TRP ILE PHE SER SER GLU LEU SER ARG SEQRES 48 C 723 ASP PHE THR ARG LEU PHE VAL TRP GLU ILE LEU HIS SER SEQRES 49 C 723 THR ILE ARG LYS MET ASN LYS HIS VAL GLY ALA GLN SER SEQRES 50 C 723 GLU GLN LYS ASN LEU PHE LEU VAL ILE PHE GLN ARG PHE SEQRES 51 C 723 ILE MET ILE LEU THR GLU HIS LEU VAL ARG CYS GLU THR SEQRES 52 C 723 ASP GLY THR SER VAL LEU THR PRO TRP TYR LYS ASN CYS SEQRES 53 C 723 ILE GLU ARG LEU GLN GLN ILE PHE LEU GLN HIS HIS GLN SEQRES 54 C 723 ILE ILE GLN GLN TYR MET VAL THR LEU GLU ASN LEU LEU SEQRES 55 C 723 PHE THR ALA GLU LEU ASP PRO HIS ILE LEU ALA VAL PHE SEQRES 56 C 723 GLN GLN PHE CYS ALA LEU GLN ALA SEQRES 1 Z 156 MET SER GLY GLY LEU LEU LYS ALA LEU ARG SER ASP SER SEQRES 2 Z 156 TYR VAL GLU LEU SER GLN TYR ARG ASP GLN HIS PHE ARG SEQRES 3 Z 156 GLY ASP ASN GLU GLU GLN GLU LYS LEU LEU LYS LYS SER SEQRES 4 Z 156 CYS THR LEU TYR VAL GLY ASN LEU SER PHE TYR THR THR SEQRES 5 Z 156 GLU GLU GLN ILE TYR GLU LEU PHE SER LYS SER GLY ASP SEQRES 6 Z 156 ILE LYS LYS ILE ILE MET GLY LEU ASP LYS MET LYS LYS SEQRES 7 Z 156 THR ALA CYS GLY PHE CYS PHE VAL GLU TYR TYR SER ARG SEQRES 8 Z 156 ALA ASP ALA GLU ASN ALA MET ARG TYR ILE ASN GLY THR SEQRES 9 Z 156 ARG LEU ASP ASP ARG ILE ILE ARG THR ASP TRP ASP ALA SEQRES 10 Z 156 GLY PHE LYS GLU GLY ARG GLN TYR GLY ARG GLY ARG SER SEQRES 11 Z 156 GLY GLY GLN VAL ARG ASP GLU TYR ARG GLN ASP TYR ASP SEQRES 12 Z 156 ALA GLY ARG GLY GLY TYR GLY LYS LEU ALA GLN ASN GLN HET GDP Z1151 28 HET 7MG Z1152 24 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 7MG C11 H18 N5 O8 P FORMUL 5 HOH *365(H2 O) HELIX 1 1 ASP C 29 VAL C 38 1 10 HELIX 2 2 SER C 45 LEU C 79 1 35 HELIX 3 3 LYS C 82 ASN C 97 1 16 HELIX 4 4 ASN C 97 ALA C 118 1 22 HELIX 5 5 ASN C 120 CYS C 137 1 18 HELIX 6 6 ALA C 141 SER C 154 1 14 HELIX 7 7 VAL C 155 GLU C 158 5 4 HELIX 8 8 PRO C 162 SER C 175 1 14 HELIX 9 9 SER C 176 ARG C 206 1 31 HELIX 10 10 HIS C 210 GLN C 215 1 6 HELIX 11 11 GLU C 227 ASP C 242 1 16 HELIX 12 12 ARG C 251 ALA C 255 5 5 HELIX 13 13 PHE C 256 GLU C 262 1 7 HELIX 14 14 ASP C 293 ASP C 297 5 5 HELIX 15 15 SER C 308 TRP C 326 1 19 HELIX 16 16 GLU C 328 SER C 338 1 11 HELIX 17 17 PRO C 346 PHE C 360 1 15 HELIX 18 18 ILE C 368 GLN C 383 1 16 HELIX 19 19 SER C 386 ARG C 401 1 16 HELIX 20 20 LEU C 402 THR C 404 5 3 HELIX 21 21 ASN C 406 ASN C 423 1 18 HELIX 22 22 SER C 429 LEU C 437 5 9 HELIX 23 23 SER C 443 LEU C 459 1 17 HELIX 24 24 TYR C 461 VAL C 469 1 9 HELIX 25 25 PRO C 470 CYS C 477 5 8 HELIX 26 26 GLY C 497 SER C 510 1 14 HELIX 27 27 THR C 513 LEU C 521 1 9 HELIX 28 28 LYS C 522 VAL C 524 5 3 HELIX 29 29 ASN C 540 LEU C 552 1 13 HELIX 30 30 HIS C 553 ALA C 556 5 4 HELIX 31 31 SER C 558 PHE C 569 1 12 HELIX 32 32 PHE C 569 ALA C 577 1 9 HELIX 33 33 SER C 579 ARG C 595 1 17 HELIX 34 34 HIS C 597 THR C 611 1 15 HELIX 35 35 ASP C 615 SER C 625 1 11 HELIX 36 36 SER C 626 SER C 629 5 4 HELIX 37 37 ARG C 634 HIS C 651 1 18 HELIX 38 38 ALA C 702 ASP C 731 1 30 HELIX 39 39 THR C 737 HIS C 754 1 18 HELIX 40 40 HIS C 754 GLN C 759 1 6 HELIX 41 41 TYR C 761 LEU C 769 1 9 HELIX 42 42 ASP C 775 LEU C 788 1 14 HELIX 43 43 LEU Z 6 SER Z 11 1 6 HELIX 44 44 ASP Z 12 GLU Z 16 5 5 HELIX 45 45 ASP Z 28 LYS Z 37 1 10 HELIX 46 46 THR Z 52 SER Z 61 1 10 HELIX 47 47 LYS Z 62 GLY Z 64 5 3 HELIX 48 48 SER Z 90 ILE Z 101 1 12 HELIX 49 49 GLN Z 133 TYR Z 138 5 6 HELIX 50 50 ALA Z 144 GLY Z 147 5 4 SHEET 1 ZA 4 ILE Z 66 LEU Z 73 0 SHEET 2 ZA 4 ALA Z 80 TYR Z 88 -1 N CYS Z 81 O GLY Z 72 SHEET 3 ZA 4 THR Z 41 GLY Z 45 -1 O LEU Z 42 N VAL Z 86 SHEET 4 ZA 4 ARG Z 112 TRP Z 115 -1 O ARG Z 112 N GLY Z 45 SHEET 1 ZB 2 ARG Z 105 LEU Z 106 0 SHEET 2 ZB 2 ARG Z 109 ILE Z 110 -1 O ARG Z 109 N LEU Z 106 LINK O3B GDP Z1151 P 7MG Z1152 1555 1555 1.62 CISPEP 1 LYS C 221 PRO C 222 0 0.91 CISPEP 2 LEU C 362 PRO C 363 0 0.46 SITE 1 AC1 7 GLU C 58 TYR Z 20 ARG Z 127 VAL Z 134 SITE 2 AC1 7 TYR Z 138 7MG Z1152 HOH Z2063 SITE 1 AC2 15 TYR Z 20 ASP Z 22 TYR Z 43 PHE Z 83 SITE 2 AC2 15 ARG Z 112 ASP Z 114 TRP Z 115 ASP Z 116 SITE 3 AC2 15 ARG Z 123 TYR Z 125 ARG Z 127 GLN Z 133 SITE 4 AC2 15 VAL Z 134 GDP Z1151 HOH Z2062 CRYST1 112.780 112.780 158.310 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008867 0.005119 0.000000 0.00000 SCALE2 0.000000 0.010238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006317 0.00000