HEADER OXIDOREDUCTASE 05-SEP-02 1H3J TITLE STRUCTURE OF RECOMBINANT COPRINUS CINEREUS PEROXIDASE DETERMINED TO TITLE 2 2.0 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 22-363; COMPND 5 EC: 1.11.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-LINKED GLYCOSYLATION SITE AT ASN142 O-LINKED COMPND 8 GLYCOSYLATION SITE AT SER338 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINOPSIS CINEREA; SOURCE 3 ORGANISM_TAXID: 5346; SOURCE 4 GENE: CIP1; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS OXIDOREDUCTASE, PEROXIDASE, HEME, CALCIUM-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.F.W.PETERSEN,K.HOUBORG,P.HARRIS,S.LARSEN REVDAT 7 01-FEB-23 1H3J 1 COMPND SOURCE JRNL REMARK REVDAT 7 2 1 DBREF SEQRES HET HETNAM REVDAT 7 3 1 HETSYN FORMUL LINK ATOM REVDAT 6 18-NOV-20 1H3J 1 HETSYN REVDAT 5 29-JUL-20 1H3J 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 22-MAY-19 1H3J 1 REMARK REVDAT 3 19-OCT-11 1H3J 1 REMARK HETSYN FORMUL SITE REVDAT 3 2 1 VERSN REVDAT 2 24-FEB-09 1H3J 1 VERSN REVDAT 1 12-JUN-03 1H3J 0 JRNL AUTH K.HOUBORG,P.HARRIS,J.F.W.PETERSEN,P.ROWLAND,J.POULSEN, JRNL AUTH 2 P.SCHNEIDER,J.VIND,S.LARSEN JRNL TITL IMPACT OF THE PHYSICAL AND CHEMICAL ENVIRONMENT ON THE JRNL TITL 2 MOLECULAR STRUCTURE OF COPRINUS CINEREUS PEROXIDASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 989 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777760 JRNL DOI 10.1107/S0907444903006772 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.F.W.PETERSEN,A.KADZIOLA,S.LARSEN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF A RECOMBINANT PEROXIDASE FROM REMARK 1 TITL 2 COPRINUS CINEREUS AT 2.6 A REMARK 1 REF FEBS LETT. V. 339 291 1994 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 8112469 REMARK 1 DOI 10.1016/0014-5793(94)80433-8 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 48695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 169 REMARK 3 SOLVENT ATOMS : 498 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1290011360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG6000, 0.35 M MGCL2, 0.1 M REMARK 280 HEPES, PH 7.0, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.59000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.59000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ACTIVITY INVOLVES DONOR + H(2)O(2) = OXIDIZED DONOR + 2 H(2)O. REMARK 400 USALLY OCCURS BOUND TO PROTOHEME IX, IRON(III) ION AND 2 CALCIUM REMARK 400 IONS PER SUBUNIT. REMARK 400 REMARK 400 N-LINKED GLYCOSYLATION SITE AT ASN142 REMARK 400 O-LINKED GLYCOSYLATION SITE AT SER338 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLY B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 333 CB OG REMARK 470 SER B 333 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 338 C1 BMA B 404 1.36 REMARK 500 OG SER A 338 C1 BMA A 404 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 183 CG HIS B 183 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 12 -17.73 -48.70 REMARK 500 ASN A 35 -64.13 -104.59 REMARK 500 CYS A 42 71.75 -114.23 REMARK 500 GLU A 43 -154.99 -123.41 REMARK 500 ASN A 192 88.05 -154.07 REMARK 500 ASN B 35 -63.99 -104.69 REMARK 500 CYS B 42 65.24 -113.76 REMARK 500 GLU B 43 -155.62 -116.98 REMARK 500 ASN B 192 89.16 -151.70 REMARK 500 ILE B 195 58.35 -118.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BMA A 404 REMARK 610 BMA B 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 O REMARK 620 2 ASP A 56 OD1 81.7 REMARK 620 3 GLY A 74 O 69.1 92.8 REMARK 620 4 ASP A 76 OD2 136.3 82.6 71.2 REMARK 620 5 SER A 78 OG 149.5 91.0 141.2 71.0 REMARK 620 6 HOH A 563 O 72.3 88.8 140.7 147.6 78.0 REMARK 620 7 HOH A 593 O 98.5 176.4 90.6 99.6 87.0 87.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HEM A 401 NA 97.4 REMARK 620 3 HEM A 401 NB 90.4 96.2 REMARK 620 4 HEM A 401 NC 89.9 172.6 84.7 REMARK 620 5 HEM A 401 ND 92.8 85.8 176.0 92.8 REMARK 620 6 HOH A 628 O 170.0 85.8 79.8 87.1 96.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 184 O REMARK 620 2 SER A 184 OG 70.4 REMARK 620 3 ASP A 201 OD1 78.6 113.8 REMARK 620 4 ASP A 201 OD2 92.0 76.3 47.5 REMARK 620 5 THR A 203 O 84.6 151.4 72.8 119.4 REMARK 620 6 THR A 203 OG1 150.7 138.0 81.0 89.5 69.3 REMARK 620 7 VAL A 206 O 92.1 79.0 159.8 152.0 88.6 100.1 REMARK 620 8 ASP A 208 OD1 140.4 70.2 121.8 82.7 131.9 68.8 76.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 552 O REMARK 620 2 HOH A 610 O 91.8 REMARK 620 3 HOH B 540 O 87.4 178.0 REMARK 620 4 HOH B 595 O 87.8 88.8 89.3 REMARK 620 5 HOH B 688 O 178.1 86.4 94.4 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 56 O REMARK 620 2 ASP B 56 OD2 86.6 REMARK 620 3 GLY B 74 O 68.8 96.5 REMARK 620 4 ASP B 76 OD2 138.4 79.8 74.0 REMARK 620 5 SER B 78 OG 150.5 86.1 140.5 67.7 REMARK 620 6 HOH B 554 O 99.7 170.4 92.6 99.8 84.9 REMARK 620 7 HOH B 587 O 76.0 86.8 144.3 141.1 75.1 87.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 183 NE2 REMARK 620 2 HEM B 401 NA 100.4 REMARK 620 3 HEM B 401 NB 93.5 96.6 REMARK 620 4 HEM B 401 NC 87.0 172.1 85.6 REMARK 620 5 HEM B 401 ND 85.6 85.3 178.0 92.6 REMARK 620 6 HOH B 628 O 176.6 82.4 84.2 90.3 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 184 O REMARK 620 2 SER B 184 OG 71.3 REMARK 620 3 ASP B 201 OD1 83.3 116.4 REMARK 620 4 ASP B 201 OD2 97.2 77.8 48.3 REMARK 620 5 THR B 203 O 82.8 148.9 75.9 123.5 REMARK 620 6 THR B 203 OG1 151.3 137.2 79.6 88.5 70.8 REMARK 620 7 VAL B 206 O 86.1 82.2 153.9 157.3 79.1 99.3 REMARK 620 8 ASP B 208 OD1 140.4 70.3 122.8 83.9 129.1 68.0 79.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LY8 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF A MUTANT ENZYME OF COPRINUSCINEREUS REMARK 900 PEROXIDASE PROVIDES AN UNDERSTANDING OF ITSINCREASED REMARK 900 THERMOSTABILITY AND INSIGHT INTO MODELLING OFPROTEIN STRUCTURES REMARK 900 RELATED ID: 1LY9 RELATED DB: PDB REMARK 900 THE IMPACT OF THE PHYSICAL AND CHEMICAL ENVIRONMENT ON THEMOLECULAR REMARK 900 STRUCTURE OF COPRINUS CINEREUS PEROXIDASE REMARK 900 RELATED ID: 1LYC RELATED DB: PDB REMARK 900 THE IMPACT OF THE PHYSICAL AND CHEMICAL ENVIROMENT ON THEMOLECULAR REMARK 900 STRUCTURE OF COPRINUS CINEREUS PEROXIDASE REMARK 900 RELATED ID: 1LYK RELATED DB: PDB REMARK 900 THE IMPACT OF THE PHYSICAL AND CHEMICAL ENVIROMENT ON THEMOLECULAR REMARK 900 STRUCTURE OF COPRINUS CINEREUS PEROXIDASE DBREF 1H3J A 2 343 UNP P28314 PER_COPCI 22 363 DBREF 1H3J B 2 343 UNP P28314 PER_COPCI 22 363 SEQRES 1 A 342 GLY PRO GLY GLY GLY GLY SER VAL THR CYS PRO GLY GLY SEQRES 2 A 342 GLN SER THR SER ASN SER GLN CYS CYS VAL TRP PHE ASP SEQRES 3 A 342 VAL LEU ASP ASP LEU GLN THR ASN PHE TYR GLN GLY SER SEQRES 4 A 342 LYS CYS GLU SER PRO VAL ARG LYS ILE LEU ARG ILE VAL SEQRES 5 A 342 PHE HIS ASP ALA ILE GLY PHE SER PRO ALA LEU THR ALA SEQRES 6 A 342 ALA GLY GLN PHE GLY GLY GLY GLY ALA ASP GLY SER ILE SEQRES 7 A 342 ILE ALA HIS SER ASN ILE GLU LEU ALA PHE PRO ALA ASN SEQRES 8 A 342 GLY GLY LEU THR ASP THR VAL GLU ALA LEU ARG ALA VAL SEQRES 9 A 342 GLY ILE ASN HIS GLY VAL SER PHE GLY ASP LEU ILE GLN SEQRES 10 A 342 PHE ALA THR ALA VAL GLY MET SER ASN CYS PRO GLY SER SEQRES 11 A 342 PRO ARG LEU GLU PHE LEU THR GLY ARG SER ASN SER SER SEQRES 12 A 342 GLN PRO SER PRO PRO SER LEU ILE PRO GLY PRO GLY ASN SEQRES 13 A 342 THR VAL THR ALA ILE LEU ASP ARG MET GLY ASP ALA GLY SEQRES 14 A 342 PHE SER PRO ASP GLU VAL VAL ASP LEU LEU ALA ALA HIS SEQRES 15 A 342 SER LEU ALA SER GLN GLU GLY LEU ASN SER ALA ILE PHE SEQRES 16 A 342 ARG SER PRO LEU ASP SER THR PRO GLN VAL PHE ASP THR SEQRES 17 A 342 GLN PHE TYR ILE GLU THR LEU LEU LYS GLY THR THR GLN SEQRES 18 A 342 PRO GLY PRO SER LEU GLY PHE ALA GLU GLU LEU SER PRO SEQRES 19 A 342 PHE PRO GLY GLU PHE ARG MET ARG SER ASP ALA LEU LEU SEQRES 20 A 342 ALA ARG ASP SER ARG THR ALA CYS ARG TRP GLN SER MET SEQRES 21 A 342 THR SER SER ASN GLU VAL MET GLY GLN ARG TYR ARG ALA SEQRES 22 A 342 ALA MET ALA LYS MET SER VAL LEU GLY PHE ASP ARG ASN SEQRES 23 A 342 ALA LEU THR ASP CYS SER ASP VAL ILE PRO SER ALA VAL SEQRES 24 A 342 SER ASN ASN ALA ALA PRO VAL ILE PRO GLY GLY LEU THR SEQRES 25 A 342 VAL ASP ASP ILE GLU VAL SER CYS PRO SER GLU PRO PHE SEQRES 26 A 342 PRO GLU ILE ALA THR ALA SER GLY PRO LEU PRO SER LEU SEQRES 27 A 342 ALA PRO ALA PRO SEQRES 1 B 342 GLY PRO GLY GLY GLY GLY SER VAL THR CYS PRO GLY GLY SEQRES 2 B 342 GLN SER THR SER ASN SER GLN CYS CYS VAL TRP PHE ASP SEQRES 3 B 342 VAL LEU ASP ASP LEU GLN THR ASN PHE TYR GLN GLY SER SEQRES 4 B 342 LYS CYS GLU SER PRO VAL ARG LYS ILE LEU ARG ILE VAL SEQRES 5 B 342 PHE HIS ASP ALA ILE GLY PHE SER PRO ALA LEU THR ALA SEQRES 6 B 342 ALA GLY GLN PHE GLY GLY GLY GLY ALA ASP GLY SER ILE SEQRES 7 B 342 ILE ALA HIS SER ASN ILE GLU LEU ALA PHE PRO ALA ASN SEQRES 8 B 342 GLY GLY LEU THR ASP THR VAL GLU ALA LEU ARG ALA VAL SEQRES 9 B 342 GLY ILE ASN HIS GLY VAL SER PHE GLY ASP LEU ILE GLN SEQRES 10 B 342 PHE ALA THR ALA VAL GLY MET SER ASN CYS PRO GLY SER SEQRES 11 B 342 PRO ARG LEU GLU PHE LEU THR GLY ARG SER ASN SER SER SEQRES 12 B 342 GLN PRO SER PRO PRO SER LEU ILE PRO GLY PRO GLY ASN SEQRES 13 B 342 THR VAL THR ALA ILE LEU ASP ARG MET GLY ASP ALA GLY SEQRES 14 B 342 PHE SER PRO ASP GLU VAL VAL ASP LEU LEU ALA ALA HIS SEQRES 15 B 342 SER LEU ALA SER GLN GLU GLY LEU ASN SER ALA ILE PHE SEQRES 16 B 342 ARG SER PRO LEU ASP SER THR PRO GLN VAL PHE ASP THR SEQRES 17 B 342 GLN PHE TYR ILE GLU THR LEU LEU LYS GLY THR THR GLN SEQRES 18 B 342 PRO GLY PRO SER LEU GLY PHE ALA GLU GLU LEU SER PRO SEQRES 19 B 342 PHE PRO GLY GLU PHE ARG MET ARG SER ASP ALA LEU LEU SEQRES 20 B 342 ALA ARG ASP SER ARG THR ALA CYS ARG TRP GLN SER MET SEQRES 21 B 342 THR SER SER ASN GLU VAL MET GLY GLN ARG TYR ARG ALA SEQRES 22 B 342 ALA MET ALA LYS MET SER VAL LEU GLY PHE ASP ARG ASN SEQRES 23 B 342 ALA LEU THR ASP CYS SER ASP VAL ILE PRO SER ALA VAL SEQRES 24 B 342 SER ASN ASN ALA ALA PRO VAL ILE PRO GLY GLY LEU THR SEQRES 25 B 342 VAL ASP ASP ILE GLU VAL SER CYS PRO SER GLU PRO PHE SEQRES 26 B 342 PRO GLU ILE ALA THR ALA SER GLY PRO LEU PRO SER LEU SEQRES 27 B 342 ALA PRO ALA PRO MODRES 1H3J ASN A 142 ASN GLYCOSYLATION SITE MODRES 1H3J SER A 338 SER GLYCOSYLATION SITE MODRES 1H3J ASN B 142 ASN GLYCOSYLATION SITE MODRES 1H3J SER B 338 SER GLYCOSYLATION SITE MODRES 1H3J HIS A 183 HIS L-HISTIDINOL MODRES 1H3J HIS B 183 HIS L-HISTIDINOL HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET HEM A 401 43 HET CA A 402 1 HET CA A 403 1 HET BMA A 404 11 HET MG A 405 1 HET HEM B 401 43 HET CA B 402 1 HET CA B 403 1 HET BMA B 404 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN HEM HEME HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 6 CA 4(CA 2+) FORMUL 8 BMA 2(C6 H12 O6) FORMUL 9 MG MG 2+ FORMUL 14 HOH *498(H2 O) HELIX 1 AA1 ASN A 19 GLN A 21 5 3 HELIX 2 AA2 CYS A 22 ASN A 35 1 14 HELIX 3 AA3 GLU A 43 ILE A 58 1 16 HELIX 4 AA4 SER A 61 ALA A 67 1 7 HELIX 5 AA5 GLY A 77 HIS A 82 1 6 HELIX 6 AA6 HIS A 82 LEU A 87 1 6 HELIX 7 AA7 ALA A 88 GLY A 93 5 6 HELIX 8 AA8 LEU A 95 GLY A 110 1 16 HELIX 9 AA9 SER A 112 ASN A 127 1 16 HELIX 10 AB1 THR A 158 GLY A 170 1 13 HELIX 11 AB2 SER A 172 LEU A 180 1 9 HELIX 12 AB3 ALA A 181 LEU A 185 5 5 HELIX 13 AB4 ASN A 192 PHE A 196 5 5 HELIX 14 AB5 THR A 209 THR A 215 1 7 HELIX 15 AB6 ARG A 243 ASP A 251 1 9 HELIX 16 AB7 THR A 254 MET A 261 1 8 HELIX 17 AB8 SER A 264 SER A 280 1 17 HELIX 18 AB9 ASP A 285 LEU A 289 5 5 HELIX 19 AC1 SER A 293 ILE A 296 5 4 HELIX 20 AC2 THR A 313 ILE A 317 5 5 HELIX 21 AC3 ASN B 19 GLN B 21 5 3 HELIX 22 AC4 CYS B 22 ASN B 35 1 14 HELIX 23 AC5 GLU B 43 ILE B 58 1 16 HELIX 24 AC6 SER B 61 ALA B 66 1 6 HELIX 25 AC7 GLY B 77 HIS B 82 1 6 HELIX 26 AC8 HIS B 82 LEU B 87 1 6 HELIX 27 AC9 ALA B 88 GLY B 93 5 6 HELIX 28 AD1 LEU B 95 GLY B 110 1 16 HELIX 29 AD2 SER B 112 SER B 126 1 15 HELIX 30 AD3 THR B 158 GLY B 170 1 13 HELIX 31 AD4 SER B 172 LEU B 180 1 9 HELIX 32 AD5 ALA B 181 LEU B 185 5 5 HELIX 33 AD6 ASN B 192 PHE B 196 5 5 HELIX 34 AD7 THR B 209 THR B 215 1 7 HELIX 35 AD8 ARG B 243 ASP B 251 1 9 HELIX 36 AD9 THR B 254 MET B 261 1 8 HELIX 37 AE1 SER B 264 SER B 280 1 17 HELIX 38 AE2 ASP B 285 LEU B 289 5 5 HELIX 39 AE3 SER B 293 ILE B 296 5 4 HELIX 40 AE4 THR B 313 ILE B 317 5 5 SHEET 1 AA1 2 VAL A 9 THR A 10 0 SHEET 2 AA1 2 SER A 16 THR A 17 -1 O THR A 17 N VAL A 9 SHEET 1 AA2 2 LEU A 137 THR A 138 0 SHEET 2 AA2 2 THR A 290 ASP A 291 -1 O THR A 290 N THR A 138 SHEET 1 AA3 2 SER A 187 GLN A 188 0 SHEET 2 AA3 2 SER A 198 PRO A 199 -1 O SER A 198 N GLN A 188 SHEET 1 AA4 2 GLU A 231 GLU A 232 0 SHEET 2 AA4 2 ARG A 241 MET A 242 -1 O ARG A 241 N GLU A 232 SHEET 1 AA5 2 VAL A 307 ILE A 308 0 SHEET 2 AA5 2 ALA A 330 THR A 331 1 O ALA A 330 N ILE A 308 SHEET 1 AA6 2 VAL B 9 THR B 10 0 SHEET 2 AA6 2 SER B 16 THR B 17 -1 O THR B 17 N VAL B 9 SHEET 1 AA7 2 LEU B 137 THR B 138 0 SHEET 2 AA7 2 THR B 290 ASP B 291 -1 O THR B 290 N THR B 138 SHEET 1 AA8 2 SER B 187 GLN B 188 0 SHEET 2 AA8 2 SER B 198 PRO B 199 -1 O SER B 198 N GLN B 188 SHEET 1 AA9 2 GLU B 231 GLU B 232 0 SHEET 2 AA9 2 ARG B 241 MET B 242 -1 O ARG B 241 N GLU B 232 SHEET 1 AB1 2 VAL B 307 ILE B 308 0 SHEET 2 AB1 2 ALA B 330 THR B 331 1 O ALA B 330 N ILE B 308 SSBOND 1 CYS A 11 CYS A 23 1555 1555 2.05 SSBOND 2 CYS A 22 CYS A 292 1555 1555 2.04 SSBOND 3 CYS A 42 CYS A 128 1555 1555 2.01 SSBOND 4 CYS A 256 CYS A 321 1555 1555 2.04 SSBOND 5 CYS B 11 CYS B 23 1555 1555 2.05 SSBOND 6 CYS B 22 CYS B 292 1555 1555 2.04 SSBOND 7 CYS B 42 CYS B 128 1555 1555 2.02 SSBOND 8 CYS B 256 CYS B 321 1555 1555 2.02 LINK ND2 ASN A 142 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 142 C1 NAG D 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O ASP A 56 CA CA A 402 1555 1555 2.41 LINK OD1 ASP A 56 CA CA A 402 1555 1555 2.32 LINK O GLY A 74 CA CA A 402 1555 1555 2.47 LINK OD2 ASP A 76 CA CA A 402 1555 1555 2.59 LINK OG SER A 78 CA CA A 402 1555 1555 2.40 LINK NE2 HIS A 183 FE HEM A 401 1555 1555 2.20 LINK O SER A 184 CA CA A 403 1555 1555 2.41 LINK OG SER A 184 CA CA A 403 1555 1555 2.62 LINK OD1 ASP A 201 CA CA A 403 1555 1555 2.80 LINK OD2 ASP A 201 CA CA A 403 1555 1555 2.56 LINK O THR A 203 CA CA A 403 1555 1555 2.05 LINK OG1 THR A 203 CA CA A 403 1555 1555 2.49 LINK O VAL A 206 CA CA A 403 1555 1555 2.39 LINK OD1 ASP A 208 CA CA A 403 1555 1555 2.55 LINK FE HEM A 401 O HOH A 628 1555 1555 2.45 LINK CA CA A 402 O HOH A 563 1555 1555 2.46 LINK CA CA A 402 O HOH A 593 1555 1555 2.21 LINK MG MG A 405 O HOH A 552 1555 1555 2.10 LINK MG MG A 405 O HOH A 610 1555 1555 2.15 LINK MG MG A 405 O HOH B 540 1555 2555 2.08 LINK MG MG A 405 O HOH B 595 1555 2555 2.15 LINK MG MG A 405 O HOH B 688 1555 2555 1.95 LINK O ASP B 56 CA CA B 402 1555 1555 2.30 LINK OD2 ASP B 56 CA CA B 402 1555 1555 2.45 LINK O GLY B 74 CA CA B 402 1555 1555 2.55 LINK OD2 ASP B 76 CA CA B 402 1555 1555 2.65 LINK OG SER B 78 CA CA B 402 1555 1555 2.46 LINK NE2 HIS B 183 FE HEM B 401 1555 1555 2.17 LINK O SER B 184 CA CA B 403 1555 1555 2.32 LINK OG SER B 184 CA CA B 403 1555 1555 2.38 LINK OD1 ASP B 201 CA CA B 403 1555 1555 2.72 LINK OD2 ASP B 201 CA CA B 403 1555 1555 2.47 LINK O THR B 203 CA CA B 403 1555 1555 2.23 LINK OG1 THR B 203 CA CA B 403 1555 1555 2.60 LINK O VAL B 206 CA CA B 403 1555 1555 2.47 LINK OD1 ASP B 208 CA CA B 403 1555 1555 2.60 LINK FE HEM B 401 O HOH B 628 1555 1555 2.33 LINK CA CA B 402 O HOH B 554 1555 1555 2.28 LINK CA CA B 402 O HOH B 587 1555 1555 2.29 CISPEP 1 GLY A 334 PRO A 335 0 -0.22 CISPEP 2 GLY B 334 PRO B 335 0 -0.09 CRYST1 127.180 75.530 76.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013055 0.00000