HEADER CELL DIFFERENTIATION 15-MAY-01 1H4X TITLE STRUCTURE OF THE BACILLUS CELL FATE DETERMINANT SPOIIAA IN THE TITLE 2 PHOSPHORYLATED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-SIGMA F FACTOR ANTAGONIST; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SPOIIAA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SPHAERICUS; SOURCE 3 ORGANISM_TAXID: 1421; SOURCE 4 STRAIN: ATCC14577; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL DIFFERENTIATION, PHOSPHORYLATION, SIGMA FACTOR, SPORULATION EXPDTA X-RAY DIFFRACTION AUTHOR P.R.SEAVERS,R.J.LEWIS,J.A.BRANNIGAN,K.H.G.VERSCHUEREN,G.N.MURSHUDOV, AUTHOR 2 A.J.WILKINSON REVDAT 4 16-OCT-24 1H4X 1 LINK REVDAT 3 24-FEB-09 1H4X 1 VERSN REVDAT 2 16-AUG-01 1H4X 1 ATOM REVDAT 1 06-JUL-01 1H4X 0 JRNL AUTH P.R.SEAVERS,R.J.LEWIS,J.A.BRANNIGAN,K.H.G.VERSCHUEREN, JRNL AUTH 2 G.N.MURSHUDOV,A.J.WILKINSON JRNL TITL STRUCTURE OF THE BACILLUS CELL FATE DETERMINANT SPOIIAA IN JRNL TITL 2 PHOSPHORYLATED AND UNPHOSPHORYLATED FORMS JRNL REF STRUCTURE V. 9 605 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11470435 JRNL DOI 10.1016/S0969-2126(01)00623-2 REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0.36 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 68102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4628 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1857 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1794 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 2516 ; 2.086 ; 1.960 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 4140 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1960 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 424 ; 0.268 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1764 ; 0.245 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 5 ; 1.047 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 258 ; 0.259 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.213 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.234 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 77 ; 0.224 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1118 ; 1.834 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1833 ; 2.666 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 739 ; 3.395 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 683 ; 4.738 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1H4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1290008046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 5K MME, 200MM (NH4)2SO4, 100MM REMARK 280 MES (PH 6.5), PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.55950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.94600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.78850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.94600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.55950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.78850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 IN THE PHOSPHORYLATED FORM COUNTERACTS SPOIIAB THUS REMARK 400 RELEASING SIGMA F REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 113 REMARK 465 ILE A 114 REMARK 465 VAL A 115 REMARK 465 ASN A 116 REMARK 465 GLY A 117 REMARK 465 MET B 1 REMARK 465 GLY B 113 REMARK 465 ILE B 114 REMARK 465 VAL B 115 REMARK 465 ASN B 116 REMARK 465 GLY B 117 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 10 CD NE CZ NH1 NH2 REMARK 480 GLU A 11 CD OE1 OE2 REMARK 480 GLU A 50 CD OE1 OE2 REMARK 480 ARG A 51 CD NE CZ NH1 NH2 REMARK 480 GLU A 71 CG CD OE1 OE2 REMARK 480 ARG A 110 CZ NH1 NH2 REMARK 480 GLU B 20 CG CD OE1 OE2 REMARK 480 LYS B 88 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 10 O HOH A 2025 1.51 REMARK 500 O HOH B 2015 O HOH B 2026 1.56 REMARK 500 OE2 GLU B 20 O HOH B 2047 1.61 REMARK 500 O HOH B 2015 O HOH B 2209 1.69 REMARK 500 NH2 ARG A 110 O HOH A 2201 1.79 REMARK 500 O HOH A 2030 O HOH A 2111 1.80 REMARK 500 NH2 ARG A 10 O HOH A 2023 1.82 REMARK 500 O HOH B 2044 O HOH B 2098 1.87 REMARK 500 CG GLU A 71 O HOH A 2148 1.88 REMARK 500 O HOH A 2111 O HOH A 2112 1.92 REMARK 500 O HOH B 2208 O HOH B 2210 1.97 REMARK 500 O2P SEP A 57 O HOH A 2131 1.98 REMARK 500 O3 TRS A 1113 O HOH A 2209 1.99 REMARK 500 O HOH A 2161 O HOH B 2031 2.01 REMARK 500 CZ ARG A 10 O HOH A 2025 2.02 REMARK 500 O1 TRS B 1113 O HOH B 2213 2.03 REMARK 500 NH2 ARG A 10 O HOH A 2025 2.04 REMARK 500 N TRS B 1113 O HOH B 2212 2.06 REMARK 500 OE1 GLU A 50 O HOH A 2119 2.07 REMARK 500 O HOH A 2027 O HOH A 2060 2.08 REMARK 500 OE1 GLU B 27 O HOH B 2063 2.11 REMARK 500 O HOH B 2039 O HOH B 2040 2.14 REMARK 500 NE ARG A 76 O HOH A 2157 2.16 REMARK 500 OE1 GLU A 11 O HOH A 2031 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2045 O HOH B 2213 4555 1.53 REMARK 500 O HOH B 2196 O HOH B 2212 4555 1.96 REMARK 500 O HOH A 2061 O HOH B 2062 2555 2.03 REMARK 500 O HOH A 2009 O HOH A 2143 4556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 47 NE1 TRP A 47 CE2 0.114 REMARK 500 TRP A 98 NE1 TRP A 98 CE2 0.113 REMARK 500 VAL B 13 CB VAL B 13 CG2 -0.181 REMARK 500 GLU B 27 CB GLU B 27 CG 0.190 REMARK 500 SER B 34 CB SER B 34 OG -0.105 REMARK 500 TRP B 47 NE1 TRP B 47 CE2 0.114 REMARK 500 GLU B 50 CB GLU B 50 CG -0.251 REMARK 500 MET B 55 CB MET B 55 CG 0.262 REMARK 500 MET B 55 SD MET B 55 CE -0.338 REMARK 500 TRP B 98 NE1 TRP B 98 CE2 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 8 CA - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 HIS A 23 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 VAL B 13 CA - CB - CG2 ANGL. DEV. = 16.0 DEGREES REMARK 500 HIS B 23 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 GLU B 50 CA - CB - CG ANGL. DEV. = 23.6 DEGREES REMARK 500 MET B 55 N - CA - CB ANGL. DEV. = -22.8 DEGREES REMARK 500 MET B 55 CA - CB - CG ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 151.95 -42.81 REMARK 500 THR B 9 -178.15 -171.86 REMARK 500 PHE B 54 139.88 173.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 76 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2028 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B2023 DISTANCE = 6.34 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B1113 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE SPOIIA FROM BACILLUS SPHAERICUSS REMARK 999 STRAIN ATCC14577, IS SIMILAR TO THE SWISSPROT REMARK 999 ENTRY O32723: REMARK 999 1H4X AFQLEMVTRETVVIRLFGELDHHAVEQIRAKISTAIF REMARK 999 O32723 MHFQLEMVTRETVVIRLFGELDHHAVEQIRAKISAAIF REMARK 999 REMARK 999 1H4X QGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGR REMARK 999 O32723 QGTVTTIIWNLEGLSFMDSSGVGLVLGRMRELEAVAGR REMARK 999 REMARK 999 1H4X TILLNPSPTMRKVFQFSGLGPWMMDATEEEAIDRVR REMARK 999 O32723 TILLNPSPTMRKVFQFSGLGPWMMDATEEQAIDRVRGIVNG REMARK 999 REMARK 999 THE SEQUENCE FOR THE PROTEIN FROM STRAIN ATCC14577 REMARK 999 HAS NOT BEEN DEPOSITED. DBREF 1H4X A 1 117 PDB 1H4X 1H4X 1 117 DBREF 1H4X B 1 117 PDB 1H4X 1H4X 1 117 SEQADV 1H4X SEP A 57 PDB 1H4X SER 57 MODIFIED RESIDUE SEQADV 1H4X SEP B 57 PDB 1H4X SER 57 MODIFIED RESIDUE SEQRES 1 A 117 MET ALA PHE GLN LEU GLU MET VAL THR ARG GLU THR VAL SEQRES 2 A 117 VAL ILE ARG LEU PHE GLY GLU LEU ASP HIS HIS ALA VAL SEQRES 3 A 117 GLU GLN ILE ARG ALA LYS ILE SER THR ALA ILE PHE GLN SEQRES 4 A 117 GLY ALA VAL THR THR ILE ILE TRP ASN PHE GLU ARG LEU SEQRES 5 A 117 SER PHE MET ASP SEP SER GLY VAL GLY LEU VAL LEU GLY SEQRES 6 A 117 ARG MET ARG GLU LEU GLU ALA VAL ALA GLY ARG THR ILE SEQRES 7 A 117 LEU LEU ASN PRO SER PRO THR MET ARG LYS VAL PHE GLN SEQRES 8 A 117 PHE SER GLY LEU GLY PRO TRP MET MET ASP ALA THR GLU SEQRES 9 A 117 GLU GLU ALA ILE ASP ARG VAL ARG GLY ILE VAL ASN GLY SEQRES 1 B 117 MET ALA PHE GLN LEU GLU MET VAL THR ARG GLU THR VAL SEQRES 2 B 117 VAL ILE ARG LEU PHE GLY GLU LEU ASP HIS HIS ALA VAL SEQRES 3 B 117 GLU GLN ILE ARG ALA LYS ILE SER THR ALA ILE PHE GLN SEQRES 4 B 117 GLY ALA VAL THR THR ILE ILE TRP ASN PHE GLU ARG LEU SEQRES 5 B 117 SER PHE MET ASP SEP SER GLY VAL GLY LEU VAL LEU GLY SEQRES 6 B 117 ARG MET ARG GLU LEU GLU ALA VAL ALA GLY ARG THR ILE SEQRES 7 B 117 LEU LEU ASN PRO SER PRO THR MET ARG LYS VAL PHE GLN SEQRES 8 B 117 PHE SER GLY LEU GLY PRO TRP MET MET ASP ALA THR GLU SEQRES 9 B 117 GLU GLU ALA ILE ASP ARG VAL ARG GLY ILE VAL ASN GLY MODRES 1H4X SEP A 57 SER PHOSPHOSERINE MODRES 1H4X SEP B 57 SER PHOSPHOSERINE HET SEP A 57 15 HET SEP B 57 10 HET TRS A1113 8 HET TRS B1113 8 HETNAM SEP PHOSPHOSERINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN SEP PHOSPHONOSERINE HETSYN TRS TRIS BUFFER FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 TRS 2(C4 H12 N O3 1+) FORMUL 5 HOH *426(H2 O) HELIX 1 1 ASP A 22 GLN A 39 1 18 HELIX 2 2 SEP A 57 ALA A 72 1 16 HELIX 3 3 SER A 83 SER A 93 1 11 HELIX 4 4 LEU A 95 PRO A 97 5 3 HELIX 5 5 THR A 103 VAL A 111 1 9 HELIX 6 6 ASP B 22 GLN B 39 1 18 HELIX 7 7 SEP B 57 VAL B 73 1 17 HELIX 8 8 SER B 83 GLY B 94 1 12 HELIX 9 9 LEU B 95 PRO B 97 5 3 HELIX 10 10 THR B 103 ARG B 112 1 10 SHEET 1 AA 5 PHE A 3 THR A 9 0 SHEET 2 AA 5 THR A 12 LEU A 21 -1 O THR A 12 N THR A 9 SHEET 3 AA 5 THR A 44 MET A 55 1 O THR A 44 N VAL A 13 SHEET 4 AA 5 ARG A 76 LEU A 80 1 O ARG A 76 N ILE A 45 SHEET 5 AA 5 MET A 99 MET A 100 1 N MET A 100 O LEU A 79 SHEET 1 BA 5 PHE B 3 THR B 9 0 SHEET 2 BA 5 THR B 12 LEU B 17 -1 O THR B 12 N VAL B 8 SHEET 3 BA 5 THR B 44 ASN B 48 1 O THR B 44 N VAL B 13 SHEET 4 BA 5 ARG B 76 LEU B 80 1 O ARG B 76 N ILE B 45 SHEET 5 BA 5 MET B 99 MET B 100 1 N MET B 100 O LEU B 79 SHEET 1 BB 2 GLY B 19 LEU B 21 0 SHEET 2 BB 2 LEU B 52 MET B 55 1 N SER B 53 O GLY B 19 LINK C ASP A 56 N SEP A 57 1555 1555 1.34 LINK C SEP A 57 N SER A 58 1555 1555 1.33 LINK C ASP B 56 N SEP B 57 1555 1555 1.23 LINK C SEP B 57 N SER B 58 1555 1555 1.32 SITE 1 AC1 8 GLY A 61 GLY A 65 ARG A 66 HOH A2016 SITE 2 AC1 8 HOH A2205 HOH A2206 HOH A2207 HOH A2209 SITE 1 AC2 10 ARG B 30 GLY B 61 GLY B 65 ARG B 66 SITE 2 AC2 10 ARG B 68 HOH B2140 HOH B2212 HOH B2213 SITE 3 AC2 10 HOH B2216 HOH B2217 CRYST1 51.119 61.577 65.892 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015176 0.00000