HEADER IRON TRANSPORT 03-JUL-01 1H76 TITLE THE CRYSTAL STRUCTURE OF DIFERRIC PORCINE SERUM TRANSFERRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEROTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIDEROPHILIN, BETA-1-METAL BINDING GLOBULIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 OTHER_DETAILS: BLOOD KEYWDS IRON TRANSPORT, GLYCOPROTEIN, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.R.HALL,J.M.HADDEN,G.A.LEONARD,S.BAILEY,M.NEU,M.WINN,P.F.LINDLEY REVDAT 4 29-JUL-20 1H76 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 24-FEB-09 1H76 1 VERSN REVDAT 2 06-JUN-06 1H76 1 REMARK HET SSBOND LINK REVDAT 2 2 1 ATOM HETATM REVDAT 1 15-JAN-02 1H76 0 JRNL AUTH D.R.HALL,J.M.HADDEN,G.A.LEONARD,S.BAILEY,M.NEU,M.WINN, JRNL AUTH 2 P.F.LINDLEY JRNL TITL THE CRYSTAL AND MOLECULAR STRUCTURES OF DIFERRIC PORCINE AND JRNL TITL 2 RABBIT SERUM TRANSFERRINS AT RESOLUTIONS OF 2.15 AND 2.60A, JRNL TITL 3 RESPECTIVELY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 70 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 11752780 JRNL DOI 10.1107/S0907444901017309 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0.32 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 38011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1360 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5400 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4660 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 7307 ; 1.961 ; 1.953 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 10928 ; 1.364 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 779 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6082 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1069 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1148 ; 0.224 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4476 ; 0.212 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4 ; 0.192 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 492 ; 0.187 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.240 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.389 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.245 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3369 ; 1.313 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5377 ; 2.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2031 ; 3.390 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1930 ; 5.593 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS THE SIDE CHAINS OF THE FOLLOWING RESIDUES WERE REMARK 3 DISORDERED AND TRUNCATED AT THE C-BETA: GLN A 3, GLU A 342, LYS REMARK 3 A 345, GLU A 421 THE SIDE CHAINS OF THE FOLLOWING RESIDUES WERE REMARK 3 FOUND IN DUAL CONFORMATIONS: ASP A 202, TYR A 399, ASP A 444, REMARK 3 ASN A 478, ASP A 544 REMARK 4 REMARK 4 1H76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1290008219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, XDISP REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 23.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.12300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 0TFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 111.88500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 111.88500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 PRO A 336 REMARK 465 ASP A 337 REMARK 465 SER A 338 REMARK 465 SER A 339 REMARK 465 LYS A 340 REMARK 465 ASN A 341 REMARK 465 LYS A 688 REMARK 465 ASN A 689 REMARK 465 PRO A 690 REMARK 465 ARG A 691 REMARK 465 VAL A 692 REMARK 465 GLU A 693 REMARK 465 THR A 694 REMARK 465 THR A 695 REMARK 465 THR A 696 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 671 O HOH A 2480 1.86 REMARK 500 O HOH A 2088 O HOH A 2264 2.01 REMARK 500 O HOH A 2097 O HOH A 2306 2.03 REMARK 500 OH TYR A 401 NH2 ARG A 671 2.05 REMARK 500 NE2 GLN A 549 O HOH A 2379 2.05 REMARK 500 O HOH A 2211 O HOH A 2421 2.08 REMARK 500 O HOH A 2094 O HOH A 2100 2.09 REMARK 500 OD2 ASP A 444 O HOH A 2301 2.10 REMARK 500 O HOH A 2418 O HOH A 2474 2.17 REMARK 500 OD1 ASP A 567 O HOH A 2390 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 584 CD GLU A 584 OE2 0.132 REMARK 500 ARG A 599 NE ARG A 599 CZ 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 133 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 360 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 444 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 CYS A 532 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 544 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 544 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 552 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 558 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 599 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 599 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 599 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 642 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 662 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 150.52 -46.62 REMARK 500 TRP A 127 -62.03 -137.45 REMARK 500 CYS A 160 -16.49 87.49 REMARK 500 PRO A 219 -165.06 -28.05 REMARK 500 LYS A 221 -168.94 -112.93 REMARK 500 CYS A 245 61.38 -165.73 REMARK 500 LEU A 298 -48.07 73.10 REMARK 500 TRP A 466 -63.84 -142.47 REMARK 500 ASN A 519 0.36 -68.37 REMARK 500 LYS A 536 -31.90 -141.56 REMARK 500 GLN A 545 -7.79 87.79 REMARK 500 CYS A 586 75.16 -157.87 REMARK 500 SER A 625 -51.76 154.07 REMARK 500 THR A 635 -98.83 -106.26 REMARK 500 LEU A 639 -49.51 73.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD1 REMARK 620 2 TYR A 94 OH 87.2 REMARK 620 3 TYR A 192 OH 175.8 96.5 REMARK 620 4 HIS A 253 NE2 86.8 97.2 90.8 REMARK 620 5 CO3 A 700 O2 86.2 93.0 95.4 167.3 REMARK 620 6 CO3 A 700 O3 87.0 156.7 90.2 105.0 64.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 703 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 396 OD2 REMARK 620 2 TYR A 431 OH 92.1 REMARK 620 3 TYR A 526 OH 167.6 97.2 REMARK 620 4 HIS A 594 NE2 83.6 93.7 87.7 REMARK 620 5 CO3 A 701 O1 90.5 94.4 96.9 170.2 REMARK 620 6 CO3 A 701 O3 81.5 159.2 92.4 105.2 66.0 REMARK 620 N 1 2 3 4 5 DBREF 1H76 A 1 696 UNP P09571 TRFE_PIG 1 696 SEQRES 1 A 696 VAL ALA GLN LYS THR VAL ARG TRP CYS THR ILE SER ASN SEQRES 2 A 696 GLN GLU ALA ASN LYS CYS SER SER PHE ARG GLU ASN MET SEQRES 3 A 696 SER LYS ALA VAL LYS ASN GLY PRO LEU VAL SER CYS VAL SEQRES 4 A 696 LYS LYS SER SER TYR LEU ASP CYS ILE LYS ALA ILE ARG SEQRES 5 A 696 ASP LYS GLU ALA ASP ALA VAL THR LEU ASP ALA GLY LEU SEQRES 6 A 696 VAL PHE GLU ALA GLY LEU ALA PRO TYR ASN LEU LYS PRO SEQRES 7 A 696 VAL VAL ALA GLU PHE TYR GLY GLN LYS ASP ASN PRO GLN SEQRES 8 A 696 THR HIS TYR TYR ALA VAL ALA VAL VAL LYS LYS GLY SER SEQRES 9 A 696 ASN PHE GLN TRP ASN GLN LEU GLN GLY LYS ARG SER CYS SEQRES 10 A 696 HIS THR GLY LEU GLY ARG SER ALA GLY TRP ILE ILE PRO SEQRES 11 A 696 MET GLY LEU LEU TYR ASP GLN LEU PRO GLU PRO ARG LYS SEQRES 12 A 696 PRO ILE GLU LYS ALA VAL ALA SER PHE PHE SER SER SER SEQRES 13 A 696 CYS VAL PRO CYS ALA ASP PRO VAL ASN PHE PRO LYS LEU SEQRES 14 A 696 CYS GLN GLN CYS ALA GLY LYS GLY ALA GLU LYS CYS ALA SEQRES 15 A 696 CYS SER ASN HIS GLU PRO TYR PHE GLY TYR ALA GLY ALA SEQRES 16 A 696 PHE ASN CYS LEU LYS GLU ASP ALA GLY ASP VAL ALA PHE SEQRES 17 A 696 VAL LYS HIS SER THR VAL LEU GLU ASN LEU PRO ASP LYS SEQRES 18 A 696 ALA ASP ARG ASP GLN TYR GLU LEU LEU CYS ARG ASP ASN SEQRES 19 A 696 THR ARG ARG PRO VAL ASP ASP TYR GLU ASN CYS TYR LEU SEQRES 20 A 696 ALA GLN VAL PRO SER HIS ALA VAL VAL ALA ARG SER VAL SEQRES 21 A 696 ASP GLY GLN GLU ASP SER ILE TRP GLU LEU LEU ASN GLN SEQRES 22 A 696 ALA GLN GLU HIS PHE GLY ARG ASP LYS SER PRO ASP PHE SEQRES 23 A 696 GLN LEU PHE SER SER SER HIS GLY LYS ASP LEU LEU PHE SEQRES 24 A 696 LYS ASP SER ALA ASN GLY PHE LEU LYS ILE PRO SER LYS SEQRES 25 A 696 MET ASP SER SER LEU TYR LEU GLY TYR GLN TYR VAL THR SEQRES 26 A 696 ALA LEU ARG ASN LEU ARG GLU GLU ILE SER PRO ASP SER SEQRES 27 A 696 SER LYS ASN GLU CYS LYS LYS VAL ARG TRP CYS ALA ILE SEQRES 28 A 696 GLY HIS GLU GLU THR GLN LYS CYS ASP ALA TRP SER ILE SEQRES 29 A 696 ASN SER GLY GLY LYS ILE GLU CYS VAL SER ALA GLU ASN SEQRES 30 A 696 THR GLU ASP CYS ILE ALA LYS ILE VAL LYS GLY GLU ALA SEQRES 31 A 696 ASP ALA MET SER LEU ASP GLY GLY TYR ILE TYR ILE ALA SEQRES 32 A 696 GLY LYS CYS GLY LEU VAL PRO VAL LEU ALA GLU ASN TYR SEQRES 33 A 696 LYS THR GLU GLY GLU ASN CYS VAL ASN THR PRO GLU LYS SEQRES 34 A 696 GLY TYR LEU ALA VAL ALA VAL VAL LYS LYS SER SER GLY SEQRES 35 A 696 PRO ASP LEU ASN TRP ASN ASN LEU LYS GLY LYS LYS SER SEQRES 36 A 696 CYS HIS THR ALA VAL ASP ARG THR ALA GLY TRP ASN ILE SEQRES 37 A 696 PRO MET GLY LEU LEU TYR ASN LYS ILE ASN SER CYS LYS SEQRES 38 A 696 PHE ASP GLN PHE PHE GLY GLU GLY CYS ALA PRO GLY SER SEQRES 39 A 696 GLN ARG ASN SER SER LEU CYS ALA LEU CYS ILE GLY SER SEQRES 40 A 696 GLU ARG ALA PRO GLY ARG GLU CYS LEU ALA ASN ASN HIS SEQRES 41 A 696 GLU ARG TYR TYR GLY TYR THR GLY ALA PHE ARG CYS LEU SEQRES 42 A 696 VAL GLU LYS GLY ASP VAL ALA PHE VAL LYS ASP GLN VAL SEQRES 43 A 696 VAL GLN GLN ASN THR ASP GLY LYS ASN LYS ASP ASP TRP SEQRES 44 A 696 ALA LYS ASP LEU LYS GLN MET ASP PHE GLU LEU LEU CYS SEQRES 45 A 696 GLN ASN GLY ALA ARG GLU PRO VAL ASP ASN ALA GLU ASN SEQRES 46 A 696 CYS HIS LEU ALA ARG ALA PRO ASN HIS ALA VAL VAL ALA SEQRES 47 A 696 ARG ASP ASP LYS VAL THR CYS VAL ALA GLU GLU LEU LEU SEQRES 48 A 696 LYS GLN GLN ALA GLN PHE GLY ARG HIS VAL THR ASP CYS SEQRES 49 A 696 SER SER SER PHE CYS MET PHE LYS SER ASN THR LYS ASP SEQRES 50 A 696 LEU LEU PHE ARG ASP ASP THR GLN CYS LEU ALA ARG VAL SEQRES 51 A 696 GLY LYS THR THR TYR GLU SER TYR LEU GLY ALA ASP TYR SEQRES 52 A 696 ILE THR ALA VAL ALA ASN LEU ARG LYS CYS SER THR SER SEQRES 53 A 696 LYS LEU LEU GLU ALA CYS THR PHE HIS SER ALA LYS ASN SEQRES 54 A 696 PRO ARG VAL GLU THR THR THR MODRES 1H76 ASN A 497 ASN GLYCOSYLATION SITE HET CO3 A 700 4 HET CO3 A 701 4 HET FE A 702 1 HET FE A 703 1 HET NAG A1688 14 HETNAM CO3 CARBONATE ION HETNAM FE FE (III) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 CO3 2(C O3 2-) FORMUL 4 FE 2(FE 3+) FORMUL 6 NAG C8 H15 N O6 FORMUL 7 HOH *494(H2 O) HELIX 1 1 SER A 12 VAL A 30 1 19 HELIX 2 2 SER A 43 ASP A 53 1 11 HELIX 3 3 ASP A 62 GLY A 70 1 9 HELIX 4 4 GLN A 107 LEU A 111 5 5 HELIX 5 5 TRP A 127 TYR A 135 1 9 HELIX 6 6 ASP A 136 LEU A 138 5 3 HELIX 7 7 PRO A 144 PHE A 153 1 10 HELIX 8 8 PHE A 166 GLN A 171 1 6 HELIX 9 9 LYS A 176 LYS A 180 5 5 HELIX 10 10 PHE A 190 GLU A 201 1 12 HELIX 11 11 SER A 212 LEU A 218 1 7 HELIX 12 12 ASP A 223 ASP A 225 5 3 HELIX 13 13 ASP A 240 CYS A 245 5 6 HELIX 14 14 GLN A 263 GLY A 279 1 17 HELIX 15 15 ASP A 314 GLY A 320 1 7 HELIX 16 16 GLY A 320 GLU A 332 1 13 HELIX 17 17 GLY A 352 SER A 366 1 15 HELIX 18 18 ASN A 377 LYS A 387 1 11 HELIX 19 19 ASP A 396 CYS A 406 1 11 HELIX 20 20 ASN A 422 THR A 426 5 5 HELIX 21 21 ASN A 446 LEU A 450 5 5 HELIX 22 22 TRP A 466 ASN A 478 1 13 HELIX 23 23 LYS A 481 PHE A 486 1 6 HELIX 24 24 SER A 498 ALA A 502 5 5 HELIX 25 25 TYR A 524 LYS A 536 1 13 HELIX 26 26 GLN A 545 ASN A 550 1 6 HELIX 27 27 LYS A 564 MET A 566 5 3 HELIX 28 28 ASP A 581 CYS A 586 5 6 HELIX 29 29 ARG A 599 ASP A 601 5 3 HELIX 30 30 LYS A 602 GLY A 618 1 17 HELIX 31 31 THR A 654 GLY A 660 1 7 HELIX 32 32 GLY A 660 LEU A 670 1 11 HELIX 33 33 ARG A 671 SER A 674 5 4 HELIX 34 34 SER A 676 THR A 683 1 8 SHEET 1 AA 2 THR A 5 THR A 10 0 SHEET 2 AA 2 LEU A 35 LYS A 40 1 O LEU A 35 N VAL A 6 SHEET 1 AB 4 VAL A 59 LEU A 61 0 SHEET 2 AB 4 ALA A 254 ARG A 258 -1 O ALA A 254 N LEU A 61 SHEET 3 AB 4 LEU A 76 PHE A 83 -1 O LYS A 77 N ALA A 257 SHEET 4 AB 4 GLY A 305 LYS A 308 -1 O GLY A 305 N PHE A 83 SHEET 1 AC 5 SER A 155 CYS A 157 0 SHEET 2 AC 5 ARG A 115 HIS A 118 1 O SER A 116 N CYS A 157 SHEET 3 AC 5 VAL A 206 LYS A 210 1 O VAL A 206 N CYS A 117 SHEET 4 AC 5 HIS A 93 LYS A 101 -1 O VAL A 97 N VAL A 209 SHEET 5 AC 5 ALA A 248 PRO A 251 -1 O ALA A 248 N ALA A 96 SHEET 1 AD 6 SER A 155 CYS A 157 0 SHEET 2 AD 6 ARG A 115 HIS A 118 1 O SER A 116 N CYS A 157 SHEET 3 AD 6 VAL A 206 LYS A 210 1 O VAL A 206 N CYS A 117 SHEET 4 AD 6 HIS A 93 LYS A 101 -1 O VAL A 97 N VAL A 209 SHEET 5 AD 6 TYR A 227 LEU A 230 -1 O GLU A 228 N VAL A 100 SHEET 6 AD 6 ARG A 236 PRO A 238 -1 O ARG A 237 N LEU A 229 SHEET 1 AE 2 VAL A 346 ILE A 351 0 SHEET 2 AE 2 ILE A 370 ALA A 375 1 O GLU A 371 N TRP A 348 SHEET 1 AF 4 MET A 393 LEU A 395 0 SHEET 2 AF 4 ALA A 595 ALA A 598 -1 O ALA A 595 N LEU A 395 SHEET 3 AF 4 VAL A 409 ASN A 415 -1 O VAL A 409 N ALA A 598 SHEET 4 AF 4 CYS A 646 ARG A 649 -1 O CYS A 646 N ASN A 415 SHEET 1 AG 4 SER A 455 HIS A 457 0 SHEET 2 AG 4 VAL A 539 LYS A 543 1 O VAL A 539 N CYS A 456 SHEET 3 AG 4 TYR A 431 LYS A 438 -1 O VAL A 434 N VAL A 542 SHEET 4 AG 4 ALA A 589 ALA A 591 -1 O ALA A 589 N ALA A 433 SHEET 1 AH 5 SER A 455 HIS A 457 0 SHEET 2 AH 5 VAL A 539 LYS A 543 1 O VAL A 539 N CYS A 456 SHEET 3 AH 5 TYR A 431 LYS A 438 -1 O VAL A 434 N VAL A 542 SHEET 4 AH 5 PHE A 568 LEU A 571 -1 O GLU A 569 N VAL A 437 SHEET 5 AH 5 ARG A 577 PRO A 579 -1 O GLU A 578 N LEU A 570 SSBOND 1 CYS A 9 CYS A 47 1555 1555 2.00 SSBOND 2 CYS A 19 CYS A 38 1555 1555 2.05 SSBOND 3 CYS A 117 CYS A 198 1555 1555 2.02 SSBOND 4 CYS A 157 CYS A 173 1555 1555 1.98 SSBOND 5 CYS A 160 CYS A 183 1555 1555 2.03 SSBOND 6 CYS A 170 CYS A 181 1555 1555 2.08 SSBOND 7 CYS A 231 CYS A 245 1555 1555 2.06 SSBOND 8 CYS A 343 CYS A 605 1555 1555 2.03 SSBOND 9 CYS A 349 CYS A 381 1555 1555 1.96 SSBOND 10 CYS A 359 CYS A 372 1555 1555 2.06 SSBOND 11 CYS A 406 CYS A 682 1555 1555 2.05 SSBOND 12 CYS A 423 CYS A 646 1555 1555 2.02 SSBOND 13 CYS A 456 CYS A 532 1555 1555 1.96 SSBOND 14 CYS A 480 CYS A 673 1555 1555 2.01 SSBOND 15 CYS A 490 CYS A 504 1555 1555 2.04 SSBOND 16 CYS A 501 CYS A 515 1555 1555 2.02 SSBOND 17 CYS A 572 CYS A 586 1555 1555 2.05 SSBOND 18 CYS A 624 CYS A 629 1555 1555 2.02 LINK ND2 ASN A 497 C1 NAG A1688 1555 1555 1.48 LINK OD1 ASP A 62 FE FE A 702 1555 1555 2.05 LINK OH TYR A 94 FE FE A 702 1555 1555 2.03 LINK OH TYR A 192 FE FE A 702 1555 1555 1.81 LINK NE2 HIS A 253 FE FE A 702 1555 1555 2.20 LINK OD2 ASP A 396 FE FE A 703 1555 1555 2.02 LINK OH TYR A 431 FE FE A 703 1555 1555 1.88 LINK OH TYR A 526 FE FE A 703 1555 1555 1.87 LINK NE2 HIS A 594 FE FE A 703 1555 1555 2.19 LINK O2 CO3 A 700 FE FE A 702 1555 1555 2.08 LINK O3 CO3 A 700 FE FE A 702 1555 1555 2.19 LINK O1 CO3 A 701 FE FE A 703 1555 1555 2.08 LINK O3 CO3 A 701 FE FE A 703 1555 1555 2.07 CISPEP 1 ALA A 72 PRO A 73 0 0.89 CISPEP 2 GLU A 140 PRO A 141 0 -0.54 CISPEP 3 LYS A 143 PRO A 144 0 -2.11 CRYST1 223.770 44.890 78.860 90.00 105.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004469 0.000000 0.001230 0.00000 SCALE2 0.000000 0.022277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013152 0.00000