HEADER TRANSFERASE 09-JUL-01 1H7Q TITLE DTDP-MANGANESE COMPLEX OF SPSA FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MAGNESIUM MANGANESE DTDP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSFERASE, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TARBOURIECH,S.J.CHARNOCK,G.J.DAVIES REVDAT 5 20-NOV-24 1H7Q 1 REMARK REVDAT 4 13-DEC-23 1H7Q 1 LINK REVDAT 3 24-FEB-09 1H7Q 1 VERSN REVDAT 2 02-JAN-02 1H7Q 1 JRNL REVDAT 1 13-DEC-01 1H7Q 0 JRNL AUTH N.TARBOURIECH,S.J.CHARNOCK,G.J.DAVIES JRNL TITL THREE-DIMENSIONAL STRUCTURES OF THE MN AND MG DTDP COMPLEXES JRNL TITL 2 OF THE FAMILY GT-2 GLYCOSYLTRANSFERASE SPSA: A COMPARISON JRNL TITL 3 WITH RELATED NDP-SUGAR GLYCOSYLTRANSFERASES. JRNL REF J.MOL.BIOL. V. 314 655 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11733986 JRNL DOI 10.1006/JMBI.2001.5159 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2065 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1814 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 2795 ; 1.680 ; 1.959 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 4235 ; 1.522 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2247 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 415 ; 0.226 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1757 ; 0.218 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1 ; 0.041 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.142 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.128 ; 0.000 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.159 ; 0.000 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.091 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.200 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 1.118 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 0.790 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 1.501 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 864 ; 2.438 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 839 ; 4.142 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1H7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1290008292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QGQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 100MM HEPES BUFFER PH REMARK 280 8.0, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.71250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.71250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.68600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.68600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.71250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.68600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.03000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.71250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.68600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.03000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2015 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 GLN A 219 REMARK 465 SER A 220 REMARK 465 ILE A 221 REMARK 465 HIS A 222 REMARK 465 PHE A 223 REMARK 465 GLN A 224 REMARK 465 LEU A 225 REMARK 465 PHE A 226 REMARK 465 GLU A 227 REMARK 465 LEU A 228 REMARK 465 GLU A 229 REMARK 465 LYS A 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 109 OE1 GLU A 209 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 212 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 57.83 -117.82 REMARK 500 ASP A 39 40.58 -97.22 REMARK 500 CYS A 155 -3.20 64.84 REMARK 500 HIS A 159 -55.99 -25.41 REMARK 500 TYR A 179 -81.88 -90.62 REMARK 500 ASP A 208 54.83 -63.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2028 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A2041 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2052 DISTANCE = 6.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1257 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD2 REMARK 620 2 TYD A1258 O3B 145.8 REMARK 620 3 TYD A1258 O2A 107.1 80.6 REMARK 620 4 HOH A2177 O 101.4 112.7 82.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1259 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 117 ND1 REMARK 620 2 GLU A 119 OE2 98.6 REMARK 620 3 HOH A2104 O 89.2 170.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2151 O REMARK 620 2 HOH A2152 O 84.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A1258 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H7L RELATED DB: PDB REMARK 900 DTDP-MAGNESIUM COMPLEX OF SPSA FROM BACILLUS SUBTILIS REMARK 900 RELATED ID: 1QG8 RELATED DB: PDB REMARK 900 NATIVE (MAGNESIUM-CONTAINING) SPSA FROM BACILLUS SUBTILIS REMARK 900 RELATED ID: 1QGQ RELATED DB: PDB REMARK 900 UDP-MANGANESE COMPLEX OF SPSA FROM BACILLUS SUBTILIS REMARK 900 RELATED ID: 1QGS RELATED DB: PDB REMARK 900 UDP-MAGNESIUM COMPLEX OF SPSA FROM BACILLUS SUBTILIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL METHIONINE CLEAVED POST-TRANSLATIONALLY DBREF 1H7Q A 2 256 UNP P39621 SPSA_BACSU 2 256 SEQRES 1 A 255 PRO LYS VAL SER VAL ILE MET THR SER TYR ASN LYS SER SEQRES 2 A 255 ASP TYR VAL ALA LYS SER ILE SER SER ILE LEU SER GLN SEQRES 3 A 255 THR PHE SER ASP PHE GLU LEU PHE ILE MET ASP ASP ASN SEQRES 4 A 255 SER ASN GLU GLU THR LEU ASN VAL ILE ARG PRO PHE LEU SEQRES 5 A 255 ASN ASP ASN ARG VAL ARG PHE TYR GLN SER ASP ILE SER SEQRES 6 A 255 GLY VAL LYS GLU ARG THR GLU LYS THR ARG TYR ALA ALA SEQRES 7 A 255 LEU ILE ASN GLN ALA ILE GLU MET ALA GLU GLY GLU TYR SEQRES 8 A 255 ILE THR TYR ALA THR ASP ASP ASN ILE TYR MET PRO ASP SEQRES 9 A 255 ARG LEU LEU LYS MET VAL ARG GLU LEU ASP THR HIS PRO SEQRES 10 A 255 GLU LYS ALA VAL ILE TYR SER ALA SER LYS THR TYR HIS SEQRES 11 A 255 LEU ASN GLU ASN ARG ASP ILE VAL LYS GLU THR VAL ARG SEQRES 12 A 255 PRO ALA ALA GLN VAL THR TRP ASN ALA PRO CYS ALA ILE SEQRES 13 A 255 ASP HIS CYS SER VAL MET HIS ARG TYR SER VAL LEU GLU SEQRES 14 A 255 LYS VAL LYS GLU LYS PHE GLY SER TYR TRP ASP GLU SER SEQRES 15 A 255 PRO ALA PHE TYR ARG ILE GLY ASP ALA ARG PHE PHE TRP SEQRES 16 A 255 ARG VAL ASN HIS PHE TYR PRO PHE TYR PRO LEU ASP GLU SEQRES 17 A 255 GLU LEU ASP LEU ASN TYR ILE THR ASP GLN SER ILE HIS SEQRES 18 A 255 PHE GLN LEU PHE GLU LEU GLU LYS ASN GLU PHE VAL ARG SEQRES 19 A 255 ASN LEU PRO PRO GLN ARG ASN CYS ARG GLU LEU ARG GLU SEQRES 20 A 255 SER LEU LYS LYS LEU GLY MET GLY HET MN A1257 1 HET TYD A1258 25 HET MG A1259 1 HET MG A1260 1 HETNAM MN MANGANESE (II) ION HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 MN MN 2+ FORMUL 3 TYD C10 H16 N2 O11 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *179(H2 O) HELIX 1 1 TYR A 16 SER A 26 1 11 HELIX 2 2 ASN A 42 ARG A 50 1 9 HELIX 3 3 PRO A 51 ASP A 55 5 5 HELIX 4 4 GLY A 67 LYS A 74 1 8 HELIX 5 5 THR A 75 ALA A 88 1 14 HELIX 6 6 ASP A 105 HIS A 117 1 13 HELIX 7 7 ASP A 158 CYS A 160 5 3 HELIX 8 8 TYR A 166 GLY A 177 1 12 HELIX 9 9 SER A 183 TYR A 187 5 5 HELIX 10 10 ILE A 189 ASN A 199 1 11 HELIX 11 11 PHE A 233 LEU A 237 5 5 HELIX 12 12 ASN A 242 GLY A 254 1 13 SHEET 1 AA 8 VAL A 58 GLN A 62 0 SHEET 2 AA 8 PHE A 32 ASP A 38 1 O LEU A 34 N ARG A 59 SHEET 3 AA 8 VAL A 4 SER A 10 1 O VAL A 4 N GLU A 33 SHEET 4 AA 8 TYR A 92 THR A 97 1 O TYR A 92 N SER A 5 SHEET 5 AA 8 VAL A 162 ARG A 165 -1 O VAL A 162 N TYR A 95 SHEET 6 AA 8 VAL A 122 LEU A 132 -1 O ILE A 123 N MET A 163 SHEET 7 AA 8 TYR A 205 THR A 217 1 O TYR A 205 N TYR A 124 SHEET 8 AA 8 ASN A 100 TYR A 102 -1 O ILE A 101 N LEU A 213 SHEET 1 AB 7 VAL A 58 GLN A 62 0 SHEET 2 AB 7 PHE A 32 ASP A 38 1 O LEU A 34 N ARG A 59 SHEET 3 AB 7 VAL A 4 SER A 10 1 O VAL A 4 N GLU A 33 SHEET 4 AB 7 TYR A 92 THR A 97 1 O TYR A 92 N SER A 5 SHEET 5 AB 7 VAL A 162 ARG A 165 -1 O VAL A 162 N TYR A 95 SHEET 6 AB 7 VAL A 122 LEU A 132 -1 O ILE A 123 N MET A 163 SHEET 7 AB 7 ILE A 138 ARG A 144 -1 N VAL A 139 O HIS A 131 SSBOND 1 CYS A 155 CYS A 243 1555 1555 2.01 LINK OD2 ASP A 99 MN MN A1257 1555 1555 2.01 LINK ND1 HIS A 117 MG MG A1259 1555 1555 2.06 LINK OE2 GLU A 119 MG MG A1259 1555 1555 2.11 LINK MN MN A1257 O3B TYD A1258 1555 1555 1.84 LINK MN MN A1257 O2A TYD A1258 1555 1555 2.06 LINK MN MN A1257 O HOH A2177 1555 1555 1.98 LINK MG MG A1259 O HOH A2104 1555 1555 2.44 LINK MG MG A1260 O HOH A2151 1555 1555 2.37 LINK MG MG A1260 O AHOH A2152 1555 1555 2.24 SITE 1 AC1 3 ASP A 99 TYD A1258 HOH A2177 SITE 1 AC2 3 HIS A 117 GLU A 119 HOH A2104 SITE 1 AC3 3 TYD A1258 HOH A2151 HOH A2152 SITE 1 AC4 15 THR A 9 TYR A 11 LYS A 13 ASP A 39 SITE 2 AC4 15 ARG A 71 ARG A 76 TYR A 77 LEU A 80 SITE 3 AC4 15 THR A 97 ASP A 98 ASP A 99 MN A1257 SITE 4 AC4 15 MG A1260 HOH A2177 HOH A2178 CRYST1 47.372 142.060 81.425 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012281 0.00000