HEADER ELECTRON TRANSPORT 16-JAN-01 1H7V TITLE RUBREDOXIN FROM GUILLARDIA THETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GUILLARDIA THETA; SOURCE 3 ORGANISM_TAXID: 55529; SOURCE 4 ATCC: 55529; SOURCE 5 ORGANELLE: NUCLEOMORPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 OTHER_DETAILS: THE RBX-GENE IS ENCODED ON THE G.THETA NUCLEOMORPH SOURCE 12 (CHROMOSOME II) KEYWDS ELECTRON TRANSPORT, RUBREDOXIN, GUILLARDIA THETA, ZINC- SUBSTITUTION, KEYWDS 2 DIPOLAR COUPLINGS EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR K.SCHWEIMER,S.HOFFMANN,J.WASTL,U.G.MAIER,P.ROESCH,H.STICHT REVDAT 4 17-JAN-18 1H7V 1 TITLE SOURCE JRNL REVDAT 3 14-JUN-17 1H7V 1 REMARK REVDAT 2 24-FEB-09 1H7V 1 VERSN REVDAT 1 29-JAN-02 1H7V 0 JRNL AUTH K.SCHWEIMER,S.HOFFMANN,J.WASTL,U.G.MAIER,P.ROSCH,H.STICHT JRNL TITL SOLUTION STRUCTURE OF A ZINC SUBSTITUTED EUKARYOTIC JRNL TITL 2 RUBREDOXIN FROM THE CRYPTOMONAD ALGA GUILLARDIA THETA. JRNL REF PROTEIN SCI. V. 9 1474 2000 JRNL REFN ISSN 0961-8368 JRNL PMID 10975569 JRNL DOI 10.1110/PS.9.8.1474 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. THE IRON-ATOM PRESENT IN THE NATIVE REMARK 3 RUBREDOXIN WAS REPLACE BY ZINC IN ORDER TO AVOID PARAMAGNETIC REMARK 3 EFFECTS. REMARK 4 REMARK 4 1H7V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1290005793. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-1H NOESY; 1H-1H TOCSY 1H-15N REMARK 210 HSQC; 1H-13C CT-HS 15N-EDITED REMARK 210 NOESY(3D); 13C-EDITED NOESY(3D) REMARK 210 HNCO HNCA; HNCACB; CBCA(CO)NH REMARK 210 HBHA (CO)NH; HNHA; HCCH-CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NDEE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION, REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED, ZINC-SUBSTITUTED RUBREDOXIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 89.86 179.70 REMARK 500 1 GLU A 5 -141.67 179.80 REMARK 500 1 TYR A 15 173.40 -49.25 REMARK 500 1 ASP A 23 49.96 -85.16 REMARK 500 1 ALA A 26 -65.96 -90.10 REMARK 500 1 LYS A 57 65.88 -106.74 REMARK 500 2 GLU A 5 64.74 -178.11 REMARK 500 2 ALA A 26 -65.88 -90.50 REMARK 500 2 VAL A 59 55.24 -115.03 REMARK 500 3 GLU A 2 71.79 -110.98 REMARK 500 3 GLU A 5 -144.17 -176.49 REMARK 500 3 ALA A 26 -64.30 -93.67 REMARK 500 3 LYS A 57 63.16 -102.97 REMARK 500 4 GLU A 5 52.91 -164.85 REMARK 500 4 ASP A 23 49.56 -85.15 REMARK 500 4 ALA A 26 -61.92 -93.79 REMARK 500 4 SER A 38 151.40 -41.40 REMARK 500 4 ALA A 45 -67.44 -99.24 REMARK 500 5 GLU A 2 153.31 -48.01 REMARK 500 5 ASP A 4 -149.57 -92.45 REMARK 500 5 GLU A 5 -23.08 175.42 REMARK 500 5 TYR A 15 174.34 -52.46 REMARK 500 5 LYS A 57 94.66 58.87 REMARK 500 6 GLU A 5 60.83 -173.15 REMARK 500 6 ALA A 26 -68.52 -90.54 REMARK 500 6 ALA A 45 -64.90 -98.42 REMARK 500 6 LYS A 57 65.26 -107.42 REMARK 500 7 GLU A 2 97.01 -175.41 REMARK 500 7 GLU A 5 70.95 175.28 REMARK 500 7 LYS A 57 73.10 38.44 REMARK 500 7 VAL A 59 130.38 179.90 REMARK 500 8 GLU A 5 30.89 175.60 REMARK 500 8 ALA A 45 -65.74 -98.88 REMARK 500 8 ILE A 56 -44.92 -130.47 REMARK 500 8 LYS A 57 71.42 41.85 REMARK 500 8 VAL A 59 59.89 -177.04 REMARK 500 9 GLU A 5 29.22 178.82 REMARK 500 9 ASP A 23 49.81 -85.12 REMARK 500 9 ALA A 26 -62.68 -93.55 REMARK 500 9 ALA A 45 -67.95 -99.23 REMARK 500 9 LYS A 57 65.61 -105.87 REMARK 500 10 GLU A 2 115.43 177.03 REMARK 500 10 GLU A 5 61.95 -174.82 REMARK 500 10 ALA A 26 -65.40 -92.25 REMARK 500 10 SER A 38 155.43 -42.02 REMARK 500 10 ALA A 45 -65.29 -98.99 REMARK 500 10 ILE A 56 86.56 -151.34 REMARK 500 11 GLU A 5 61.87 -173.91 REMARK 500 11 TYR A 15 172.39 -49.53 REMARK 500 11 ALA A 26 -67.47 -90.56 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 47 0.28 SIDE CHAIN REMARK 500 2 ARG A 47 0.12 SIDE CHAIN REMARK 500 3 ARG A 47 0.30 SIDE CHAIN REMARK 500 4 ARG A 47 0.31 SIDE CHAIN REMARK 500 5 ARG A 47 0.29 SIDE CHAIN REMARK 500 6 ARG A 47 0.18 SIDE CHAIN REMARK 500 7 ARG A 47 0.23 SIDE CHAIN REMARK 500 8 ARG A 47 0.17 SIDE CHAIN REMARK 500 9 ARG A 47 0.18 SIDE CHAIN REMARK 500 10 ARG A 47 0.17 SIDE CHAIN REMARK 500 11 ARG A 47 0.22 SIDE CHAIN REMARK 500 12 ARG A 47 0.30 SIDE CHAIN REMARK 500 13 ARG A 47 0.32 SIDE CHAIN REMARK 500 14 ARG A 47 0.31 SIDE CHAIN REMARK 500 15 ARG A 47 0.25 SIDE CHAIN REMARK 500 16 ARG A 47 0.08 SIDE CHAIN REMARK 500 17 ARG A 47 0.21 SIDE CHAIN REMARK 500 18 ARG A 47 0.27 SIDE CHAIN REMARK 500 19 ARG A 47 0.19 SIDE CHAIN REMARK 500 20 ARG A 47 0.17 SIDE CHAIN REMARK 500 21 ARG A 47 0.18 SIDE CHAIN REMARK 500 22 ARG A 47 0.23 SIDE CHAIN REMARK 500 23 ARG A 47 0.22 SIDE CHAIN REMARK 500 24 ARG A 47 0.19 SIDE CHAIN REMARK 500 25 ARG A 47 0.26 SIDE CHAIN REMARK 500 26 ARG A 47 0.20 SIDE CHAIN REMARK 500 27 ARG A 47 0.32 SIDE CHAIN REMARK 500 28 ARG A 47 0.31 SIDE CHAIN REMARK 500 29 ARG A 47 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 61 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 43 SG 109.1 REMARK 620 3 CYS A 46 SG 109.0 109.6 REMARK 620 4 CYS A 13 SG 109.9 109.0 110.2 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 61 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DX8 RELATED DB: PDB REMARK 900 RUBREDOXIN FROM GUILLARDIA THETA DBREF 1H7V A 1 60 UNP Q9XG40 Q9XG40 57 116 SEQRES 1 A 60 MET GLU ILE ASP GLU GLY LYS TYR GLU CYS GLU ALA CYS SEQRES 2 A 60 GLY TYR ILE TYR GLU PRO GLU LYS GLY ASP LYS PHE ALA SEQRES 3 A 60 GLY ILE PRO PRO GLY THR PRO PHE VAL ASP LEU SER ASP SEQRES 4 A 60 SER PHE MET CYS PRO ALA CYS ARG SER PRO LYS ASN GLN SEQRES 5 A 60 PHE LYS SER ILE LYS LYS VAL ILE HET ZN A 61 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 PRO A 33 LEU A 37 5 5 SHEET 1 A 3 TYR A 15 TYR A 17 0 SHEET 2 A 3 TYR A 8 CYS A 10 -1 N CYS A 10 O TYR A 15 SHEET 3 A 3 PHE A 53 SER A 55 -1 N LYS A 54 O GLU A 9 LINK ZN ZN A 61 SG CYS A 10 1555 1555 2.35 LINK ZN ZN A 61 SG CYS A 43 1555 1555 2.35 LINK ZN ZN A 61 SG CYS A 46 1555 1555 2.35 LINK ZN ZN A 61 SG CYS A 13 1555 1555 2.35 SITE 1 AC1 4 CYS A 10 CYS A 13 CYS A 43 CYS A 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1