HEADER CELL RECEPTOR RECOGNITION 21-JAN-01 1H7Z TITLE ADENOVIRUS AD3 FIBRE HEAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOVIRUS FIBRE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HEAD DOMAIN RESIDUES 126-319; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: ONLY THE HEAD DOMAIN, START CODON INTRODUCED AT COMPND 8 POSITION 126 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS TYPE 3; SOURCE 3 ORGANISM_TAXID: 45659; SOURCE 4 STRAIN: AD3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3); SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACUW31 KEYWDS CELL RECEPTOR RECOGNITION, ADENOVIRUS, AD3, FIBRE, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR C.DURMORT,C.STEHLIN,G.SCHOEHN,A.MITRAKI,E.DROUET,S.CUSACK, AUTHOR 2 W.P.BURMEISTER REVDAT 3 13-DEC-23 1H7Z 1 REMARK REVDAT 2 24-FEB-09 1H7Z 1 VERSN REVDAT 1 19-JUL-01 1H7Z 0 JRNL AUTH C.DURMORT,C.STEHLIN,G.SCHOEHN,A.MITRAKI,E.DROUET,S.CUSACK, JRNL AUTH 2 W.P.BURMEISTER JRNL TITL STRUCTURE OF THE FIBER HEAD OF AD3, A NON-CAR-BINDING JRNL TITL 2 SEROTYPE OF ADENOVIRUS JRNL REF VIROLOGY V. 285 302 2001 JRNL REFN ISSN 0042-6822 JRNL PMID 11437664 JRNL DOI 10.1006/VIRO.2001.0967 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 105445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5271 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 891 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.560 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.035 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.037 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.175 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.182 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.263 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.120 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 5.700 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 12.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 23.600; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.900 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.800 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.500 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.900 ; 5.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 219 - 224 ARE POORLY DEFINED. REMARK 3 THE CONFORMATION OF RESIDUES 240 - 246 DIFFERS FOR THE THREE REMARK 3 MONOMERS DUE TO A CRYSTAL CONTACT IN THIS REGION THE DENSITY REMARK 3 MAPS ONLY SHOW RESIDUES STARTING FROM 129 REMARK 4 REMARK 4 1H7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1290005805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : SAGITALLY FOCUSING 2ND CRYSTAL, REMARK 200 MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.389 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : 0.33100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1KNB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 1.5 M LI2SO4, 0.1 M HEPES REMARK 280 PH 7.0, 7.5 MG/ML PROTEIN IN 0.02 M TRIS-HCL PH 7.0 0.001 M EDTA, REMARK 280 0.02 M NACL, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.52333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.52333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A, B, C ENGINEERED MUTATION ILE126MET REMARK 400 SERVES AS THE LIGAND BETWEEN THE ADENOVIRUS CAPSID AND REMARK 400 THE HOST CELL RECEPTOR. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 126 REMARK 465 ALA A 127 REMARK 465 LEU A 128 REMARK 465 MET B 126 REMARK 465 ALA B 127 REMARK 465 LEU B 128 REMARK 465 MET C 126 REMARK 465 ALA C 127 REMARK 465 LEU C 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 219 N GLN A 220 1.65 REMARK 500 OD1 ASN B 130 O TYR B 218 2.11 REMARK 500 CG GLN A 220 OD1 ASP A 223 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2228 O HOH C 2211 5665 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 319 C ASP B 319 O 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 218 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LYS A 219 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 LYS A 219 N - CA - C ANGL. DEV. = 26.5 DEGREES REMARK 500 LYS A 219 CA - C - O ANGL. DEV. = -27.4 DEGREES REMARK 500 LYS A 219 CA - C - N ANGL. DEV. = 46.8 DEGREES REMARK 500 LYS A 219 O - C - N ANGL. DEV. = -40.8 DEGREES REMARK 500 GLN A 220 C - N - CA ANGL. DEV. = 20.9 DEGREES REMARK 500 GLN A 220 CA - C - N ANGL. DEV. = 21.1 DEGREES REMARK 500 GLN A 220 O - C - N ANGL. DEV. = -20.8 DEGREES REMARK 500 THR A 221 N - CA - CB ANGL. DEV. = 21.9 DEGREES REMARK 500 ASP A 223 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP A 223 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP A 223 CB - CG - OD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 PHE A 224 CG - CD2 - CE2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 256 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PHE A 288 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 314 CG - CD1 - CE1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 319 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 213 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 TYR B 236 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ASN B 242 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 THR B 245 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 CYS B 255 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 276 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 276 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 319 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP B 319 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 319 CA - C - O ANGL. DEV. = -21.9 DEGREES REMARK 500 ASP C 198 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP C 206 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP C 213 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 THR C 221 N - CA - C ANGL. DEV. = 29.3 DEGREES REMARK 500 ALA C 263 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG C 281 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG C 281 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP C 319 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 ASP C 319 CB - CG - OD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP C 319 CA - C - O ANGL. DEV. = -39.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 130 25.09 84.64 REMARK 500 LYS A 138 65.76 -154.14 REMARK 500 ALA A 176 35.17 -147.79 REMARK 500 LYS A 219 -136.73 -45.72 REMARK 500 ALA A 222 16.96 84.13 REMARK 500 ASP A 223 -126.32 55.57 REMARK 500 ASN A 274 -125.73 50.99 REMARK 500 LYS A 275 -66.33 77.73 REMARK 500 ASP A 279 -179.62 -179.89 REMARK 500 ASN B 130 63.56 159.67 REMARK 500 LYS B 138 67.42 -152.94 REMARK 500 ALA B 176 35.54 -149.60 REMARK 500 LYS B 219 126.78 148.61 REMARK 500 ASP B 223 4.37 -68.17 REMARK 500 ASN B 242 74.57 -163.52 REMARK 500 ALA B 243 105.31 37.39 REMARK 500 ASN B 274 -123.65 51.89 REMARK 500 LYS B 275 -71.47 73.39 REMARK 500 LYS C 138 69.15 -156.88 REMARK 500 ALA C 176 29.65 -143.95 REMARK 500 LYS C 219 -121.57 -111.46 REMARK 500 GLN C 220 11.50 155.24 REMARK 500 THR C 221 -41.58 -139.33 REMARK 500 ALA C 222 18.23 94.02 REMARK 500 ASN C 274 -126.06 53.94 REMARK 500 LYS C 275 -62.04 73.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 220 THR A 221 142.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 219 101.84 REMARK 500 GLN A 220 29.08 REMARK 500 ASN B 293 10.73 REMARK 500 LYS C 219 10.22 REMARK 500 THR C 221 13.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2093 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2105 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B2126 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C2112 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH C2141 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH C2145 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH C2170 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KNB RELATED DB: PDB REMARK 900 ADENOVIRUS TYPE 5 FIBER PROTEIN DBREF 1H7Z B 126 319 UNP P04501 FIBP_ADE03 126 319 DBREF 1H7Z C 126 319 UNP P04501 FIBP_ADE03 126 319 DBREF 1H7Z A 126 319 UNP P04501 FIBP_ADE03 126 319 SEQADV 1H7Z MET A 126 UNP P04501 ILE 126 ENGINEERED MUTATION SEQADV 1H7Z MET B 126 UNP P04501 ILE 126 ENGINEERED MUTATION SEQADV 1H7Z MET C 126 UNP P04501 ILE 126 ENGINEERED MUTATION SEQRES 1 A 194 MET ALA LEU LYS ASN ASN THR LEU TRP THR GLY PRO LYS SEQRES 2 A 194 PRO GLU ALA ASN CYS ILE ILE GLU TYR GLY LYS GLN ASN SEQRES 3 A 194 PRO ASP SER LYS LEU THR LEU ILE LEU VAL LYS ASN GLY SEQRES 4 A 194 GLY ILE VAL ASN GLY TYR VAL THR LEU MET GLY ALA SER SEQRES 5 A 194 ASP TYR VAL ASN THR LEU PHE LYS ASN LYS ASN VAL SER SEQRES 6 A 194 ILE ASN VAL GLU LEU TYR PHE ASP ALA THR GLY HIS ILE SEQRES 7 A 194 LEU PRO ASP SER SER SER LEU LYS THR ASP LEU GLU LEU SEQRES 8 A 194 LYS TYR LYS GLN THR ALA ASP PHE SER ALA ARG GLY PHE SEQRES 9 A 194 MET PRO SER THR THR ALA TYR PRO PHE VAL LEU PRO ASN SEQRES 10 A 194 ALA GLY THR HIS ASN GLU ASN TYR ILE PHE GLY GLN CYS SEQRES 11 A 194 TYR TYR LYS ALA SER ASP GLY ALA LEU PHE PRO LEU GLU SEQRES 12 A 194 VAL THR VAL MET LEU ASN LYS ARG LEU PRO ASP SER ARG SEQRES 13 A 194 THR SER TYR VAL MET THR PHE LEU TRP SER LEU ASN ALA SEQRES 14 A 194 GLY LEU ALA PRO GLU THR THR GLN ALA THR LEU ILE THR SEQRES 15 A 194 SER PRO PHE THR PHE SER TYR ILE ARG GLU ASP ASP SEQRES 1 B 194 MET ALA LEU LYS ASN ASN THR LEU TRP THR GLY PRO LYS SEQRES 2 B 194 PRO GLU ALA ASN CYS ILE ILE GLU TYR GLY LYS GLN ASN SEQRES 3 B 194 PRO ASP SER LYS LEU THR LEU ILE LEU VAL LYS ASN GLY SEQRES 4 B 194 GLY ILE VAL ASN GLY TYR VAL THR LEU MET GLY ALA SER SEQRES 5 B 194 ASP TYR VAL ASN THR LEU PHE LYS ASN LYS ASN VAL SER SEQRES 6 B 194 ILE ASN VAL GLU LEU TYR PHE ASP ALA THR GLY HIS ILE SEQRES 7 B 194 LEU PRO ASP SER SER SER LEU LYS THR ASP LEU GLU LEU SEQRES 8 B 194 LYS TYR LYS GLN THR ALA ASP PHE SER ALA ARG GLY PHE SEQRES 9 B 194 MET PRO SER THR THR ALA TYR PRO PHE VAL LEU PRO ASN SEQRES 10 B 194 ALA GLY THR HIS ASN GLU ASN TYR ILE PHE GLY GLN CYS SEQRES 11 B 194 TYR TYR LYS ALA SER ASP GLY ALA LEU PHE PRO LEU GLU SEQRES 12 B 194 VAL THR VAL MET LEU ASN LYS ARG LEU PRO ASP SER ARG SEQRES 13 B 194 THR SER TYR VAL MET THR PHE LEU TRP SER LEU ASN ALA SEQRES 14 B 194 GLY LEU ALA PRO GLU THR THR GLN ALA THR LEU ILE THR SEQRES 15 B 194 SER PRO PHE THR PHE SER TYR ILE ARG GLU ASP ASP SEQRES 1 C 194 MET ALA LEU LYS ASN ASN THR LEU TRP THR GLY PRO LYS SEQRES 2 C 194 PRO GLU ALA ASN CYS ILE ILE GLU TYR GLY LYS GLN ASN SEQRES 3 C 194 PRO ASP SER LYS LEU THR LEU ILE LEU VAL LYS ASN GLY SEQRES 4 C 194 GLY ILE VAL ASN GLY TYR VAL THR LEU MET GLY ALA SER SEQRES 5 C 194 ASP TYR VAL ASN THR LEU PHE LYS ASN LYS ASN VAL SER SEQRES 6 C 194 ILE ASN VAL GLU LEU TYR PHE ASP ALA THR GLY HIS ILE SEQRES 7 C 194 LEU PRO ASP SER SER SER LEU LYS THR ASP LEU GLU LEU SEQRES 8 C 194 LYS TYR LYS GLN THR ALA ASP PHE SER ALA ARG GLY PHE SEQRES 9 C 194 MET PRO SER THR THR ALA TYR PRO PHE VAL LEU PRO ASN SEQRES 10 C 194 ALA GLY THR HIS ASN GLU ASN TYR ILE PHE GLY GLN CYS SEQRES 11 C 194 TYR TYR LYS ALA SER ASP GLY ALA LEU PHE PRO LEU GLU SEQRES 12 C 194 VAL THR VAL MET LEU ASN LYS ARG LEU PRO ASP SER ARG SEQRES 13 C 194 THR SER TYR VAL MET THR PHE LEU TRP SER LEU ASN ALA SEQRES 14 C 194 GLY LEU ALA PRO GLU THR THR GLN ALA THR LEU ILE THR SEQRES 15 C 194 SER PRO PHE THR PHE SER TYR ILE ARG GLU ASP ASP HET SO4 A1320 5 HET SO4 A1321 5 HET SO4 B1320 5 HET SO4 B1321 5 HET SO4 B1322 5 HET SO4 C1320 5 HET SO4 C1321 5 HET SO4 C1322 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 8(O4 S 2-) FORMUL 12 HOH *891(H2 O) HELIX 1 1 SER A 177 THR A 182 1 6 HELIX 2 2 LEU A 183 ASN A 186 5 4 HELIX 3 3 ALA A 226 MET A 230 5 5 HELIX 4 4 HIS A 246 GLU A 248 5 3 HELIX 5 5 TYR B 179 ASN B 186 5 8 HELIX 6 6 ALA B 226 MET B 230 5 5 HELIX 7 7 TYR C 179 ASN C 186 5 8 HELIX 8 8 ALA C 226 MET C 230 5 5 HELIX 9 9 HIS C 246 GLU C 248 5 3 SHEET 1 AA 5 GLU A 215 LEU A 216 0 SHEET 2 AA 5 THR A 132 TRP A 134 -1 O TRP A 134 N GLU A 215 SHEET 3 AA 5 SER A 154 ASN A 163 -1 O LEU A 160 N LEU A 133 SHEET 4 AA 5 ILE A 166 GLY A 175 -1 O ILE A 166 N ASN A 163 SHEET 5 AA 5 PHE A 310 ILE A 315 -1 O PHE A 310 N VAL A 171 SHEET 1 AB 4 ASN A 188 PHE A 197 0 SHEET 2 AB 4 TYR A 284 ASN A 293 -1 O TYR A 284 N PHE A 197 SHEET 3 AB 4 LEU A 264 LEU A 273 -1 O GLU A 268 N SER A 291 SHEET 4 AB 4 TYR A 250 LYS A 258 -1 O ILE A 251 N VAL A 271 SHEET 1 BA 5 GLU B 215 LEU B 216 0 SHEET 2 BA 5 THR B 132 TRP B 134 -1 O TRP B 134 N GLU B 215 SHEET 3 BA 5 SER B 154 ASN B 163 -1 O LEU B 160 N LEU B 133 SHEET 4 BA 5 ILE B 166 GLY B 175 -1 O ILE B 166 N ASN B 163 SHEET 5 BA 5 PHE B 310 ILE B 315 -1 O PHE B 310 N VAL B 171 SHEET 1 BB 4 ASN B 188 PHE B 197 0 SHEET 2 BB 4 TYR B 284 ASN B 293 -1 O TYR B 284 N PHE B 197 SHEET 3 BB 4 LEU B 264 LEU B 273 -1 O GLU B 268 N SER B 291 SHEET 4 BB 4 TYR B 250 LYS B 258 -1 O ILE B 251 N VAL B 271 SHEET 1 CA 5 GLU C 215 LEU C 216 0 SHEET 2 CA 5 THR C 132 TRP C 134 -1 O TRP C 134 N GLU C 215 SHEET 3 CA 5 SER C 154 ASN C 163 -1 O LEU C 160 N LEU C 133 SHEET 4 CA 5 ILE C 166 GLY C 175 -1 O ILE C 166 N ASN C 163 SHEET 5 CA 5 PHE C 310 ILE C 315 -1 O PHE C 310 N VAL C 171 SHEET 1 CB 4 ASN C 188 PHE C 197 0 SHEET 2 CB 4 TYR C 284 ASN C 293 -1 O TYR C 284 N PHE C 197 SHEET 3 CB 4 LEU C 264 LEU C 273 -1 O GLU C 268 N SER C 291 SHEET 4 CB 4 TYR C 250 LYS C 258 -1 O ILE C 251 N VAL C 271 SITE 1 AC1 9 ASN A 242 THR A 245 HIS A 246 HOH A2269 SITE 2 AC1 9 HOH A2270 HOH A2271 HOH A2272 HOH A2273 SITE 3 AC1 9 HOH A2274 SITE 1 AC2 4 LYS A 149 GLN A 150 ASN A 151 HOH A2275 SITE 1 AC3 7 GLY B 244 THR B 245 HIS B 246 LYS B 275 SITE 2 AC3 7 HOH B2286 HOH B2287 HOH B2288 SITE 1 AC4 4 LYS B 149 GLN B 150 ASN B 151 HOH B2034 SITE 1 AC5 6 SER B 177 ASP B 178 TYR B 179 HOH B2022 SITE 2 AC5 6 HOH B2289 HOH B2290 SITE 1 AC6 4 LYS C 149 GLN C 150 ASN C 151 HOH C2319 SITE 1 AC7 3 LYS C 185 THR C 301 GLN C 302 SITE 1 AC8 11 TYR B 250 ARG B 276 ALA C 199 LYS C 258 SITE 2 AC8 11 HOH C2246 HOH C2321 HOH C2322 HOH C2323 SITE 3 AC8 11 HOH C2324 HOH C2325 HOH C2326 CRYST1 96.580 96.580 154.570 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010354 0.005978 0.000000 0.00000 SCALE2 0.000000 0.011956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006469 0.00000 MTRIX1 1 -0.110600 -0.252500 -0.961300 13.67610 1 MTRIX2 1 -0.919600 0.392900 0.002600 20.07380 1 MTRIX3 1 0.377100 0.884200 -0.275600 -22.23220 1 MTRIX1 2 -0.105000 -0.918700 0.380700 28.51250 1 MTRIX2 2 -0.261300 0.394900 0.880800 15.06780 1 MTRIX3 2 -0.959500 -0.007000 -0.281500 7.63300 1