data_1H8G # _entry.id 1H8G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1H8G pdb_00001h8g 10.2210/pdb1h8g/pdb PDBE EBI-5858 ? ? WWPDB D_1290005858 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-01-31 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' Other 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' struct_conn 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1H8G _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-02-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fernandez-Tornero, C.' 1 'Garcia, E.' 2 'Lopez, R.' 3 'Gimenez-Gallego, G.' 4 'Romero, A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Novel Solenoid Fold in the Cell Wall Anchoring Domain of the Pneumococcal Virulence Factor Lyta' Nat.Struct.Biol. 8 1020 ? 2001 NSBIEW US 1072-8368 2024 ? 11694890 10.1038/NSB724 1 'Cloning and Expression of Gene Fragments Encoding the Choline-Binding Domain of Pneumococcal Murein Hydrolases' Gene 89 69 ? 1990 GENED6 NE 0378-1119 0861 ? 1973677 '10.1016/0378-1119(90)90207-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fernandez-Tornero, C.' 1 ? primary 'Lopez, R.' 2 ? primary 'Garcia, E.' 3 ? primary 'Gimenez-Gallego, G.' 4 ? primary 'Romero, A.' 5 ? 1 'Sanchez-Puelles, J.M.' 6 ? 1 'Sanz, J.M.' 7 ? 1 'Garcia, J.L.' 8 ? 1 'Garcia, E.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MAJOR AUTOLYSIN' 11153.843 2 3.5.1.28 ? 'CHOLINE-BINDING DOMAIN' ? 2 non-polymer syn 'CHOLINE ION' 104.171 6 ? ? ? ? 3 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'C-LYTA, CELL WALL BINDING DOMAIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;TDGNWYWFDNSGE(MSE)ATGWKKIADKWYYFNEEGA(MSE)KTGWVKYKDTWYYLDAKEGA(MSE)VSNAFIQSADGTG WYYLKPDGTLADRPEFTVEPDGLITVK ; _entity_poly.pdbx_seq_one_letter_code_can ;TDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLAD RPEFTVEPDGLITVK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHOLINE ION' CHT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASP n 1 3 GLY n 1 4 ASN n 1 5 TRP n 1 6 TYR n 1 7 TRP n 1 8 PHE n 1 9 ASP n 1 10 ASN n 1 11 SER n 1 12 GLY n 1 13 GLU n 1 14 MSE n 1 15 ALA n 1 16 THR n 1 17 GLY n 1 18 TRP n 1 19 LYS n 1 20 LYS n 1 21 ILE n 1 22 ALA n 1 23 ASP n 1 24 LYS n 1 25 TRP n 1 26 TYR n 1 27 TYR n 1 28 PHE n 1 29 ASN n 1 30 GLU n 1 31 GLU n 1 32 GLY n 1 33 ALA n 1 34 MSE n 1 35 LYS n 1 36 THR n 1 37 GLY n 1 38 TRP n 1 39 VAL n 1 40 LYS n 1 41 TYR n 1 42 LYS n 1 43 ASP n 1 44 THR n 1 45 TRP n 1 46 TYR n 1 47 TYR n 1 48 LEU n 1 49 ASP n 1 50 ALA n 1 51 LYS n 1 52 GLU n 1 53 GLY n 1 54 ALA n 1 55 MSE n 1 56 VAL n 1 57 SER n 1 58 ASN n 1 59 ALA n 1 60 PHE n 1 61 ILE n 1 62 GLN n 1 63 SER n 1 64 ALA n 1 65 ASP n 1 66 GLY n 1 67 THR n 1 68 GLY n 1 69 TRP n 1 70 TYR n 1 71 TYR n 1 72 LEU n 1 73 LYS n 1 74 PRO n 1 75 ASP n 1 76 GLY n 1 77 THR n 1 78 LEU n 1 79 ALA n 1 80 ASP n 1 81 ARG n 1 82 PRO n 1 83 GLU n 1 84 PHE n 1 85 THR n 1 86 VAL n 1 87 GLU n 1 88 PRO n 1 89 ASP n 1 90 GLY n 1 91 LEU n 1 92 ILE n 1 93 THR n 1 94 VAL n 1 95 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LYTA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STREPTOCOCCUS PNEUMONIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1313 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location EXTRACELLULAR _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PCE17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CHT non-polymer . 'CHOLINE ION' ? 'C5 H14 N O 1' 104.171 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 224 224 THR THR A . n A 1 2 ASP 2 225 225 ASP ASP A . n A 1 3 GLY 3 226 226 GLY GLY A . n A 1 4 ASN 4 227 227 ASN ASN A . n A 1 5 TRP 5 228 228 TRP TRP A . n A 1 6 TYR 6 229 229 TYR TYR A . n A 1 7 TRP 7 230 230 TRP TRP A . n A 1 8 PHE 8 231 231 PHE PHE A . n A 1 9 ASP 9 232 232 ASP ASP A . n A 1 10 ASN 10 233 233 ASN ASN A . n A 1 11 SER 11 234 234 SER SER A . n A 1 12 GLY 12 235 235 GLY GLY A . n A 1 13 GLU 13 236 236 GLU GLU A . n A 1 14 MSE 14 237 237 MSE MSE A . n A 1 15 ALA 15 238 238 ALA ALA A . n A 1 16 THR 16 239 239 THR THR A . n A 1 17 GLY 17 240 240 GLY GLY A . n A 1 18 TRP 18 241 241 TRP TRP A . n A 1 19 LYS 19 242 242 LYS LYS A . n A 1 20 LYS 20 243 243 LYS LYS A . n A 1 21 ILE 21 244 244 ILE ILE A . n A 1 22 ALA 22 245 245 ALA ALA A . n A 1 23 ASP 23 246 246 ASP ASP A . n A 1 24 LYS 24 247 247 LYS LYS A . n A 1 25 TRP 25 248 248 TRP TRP A . n A 1 26 TYR 26 249 249 TYR TYR A . n A 1 27 TYR 27 250 250 TYR TYR A . n A 1 28 PHE 28 251 251 PHE PHE A . n A 1 29 ASN 29 252 252 ASN ASN A . n A 1 30 GLU 30 253 253 GLU GLU A . n A 1 31 GLU 31 254 254 GLU GLU A . n A 1 32 GLY 32 255 255 GLY GLY A . n A 1 33 ALA 33 256 256 ALA ALA A . n A 1 34 MSE 34 257 257 MSE MSE A . n A 1 35 LYS 35 258 258 LYS LYS A . n A 1 36 THR 36 259 259 THR THR A . n A 1 37 GLY 37 260 260 GLY GLY A . n A 1 38 TRP 38 261 261 TRP TRP A . n A 1 39 VAL 39 262 262 VAL VAL A . n A 1 40 LYS 40 263 263 LYS LYS A . n A 1 41 TYR 41 264 264 TYR TYR A . n A 1 42 LYS 42 265 265 LYS LYS A . n A 1 43 ASP 43 266 266 ASP ASP A . n A 1 44 THR 44 267 267 THR THR A . n A 1 45 TRP 45 268 268 TRP TRP A . n A 1 46 TYR 46 269 269 TYR TYR A . n A 1 47 TYR 47 270 270 TYR TYR A . n A 1 48 LEU 48 271 271 LEU LEU A . n A 1 49 ASP 49 272 272 ASP ASP A . n A 1 50 ALA 50 273 273 ALA ALA A . n A 1 51 LYS 51 274 274 LYS LYS A . n A 1 52 GLU 52 275 275 GLU GLU A . n A 1 53 GLY 53 276 276 GLY GLY A . n A 1 54 ALA 54 277 277 ALA ALA A . n A 1 55 MSE 55 278 278 MSE MSE A . n A 1 56 VAL 56 279 279 VAL VAL A . n A 1 57 SER 57 280 280 SER SER A . n A 1 58 ASN 58 281 281 ASN ASN A . n A 1 59 ALA 59 282 282 ALA ALA A . n A 1 60 PHE 60 283 283 PHE PHE A . n A 1 61 ILE 61 284 284 ILE ILE A . n A 1 62 GLN 62 285 285 GLN GLN A . n A 1 63 SER 63 286 286 SER SER A . n A 1 64 ALA 64 287 287 ALA ALA A . n A 1 65 ASP 65 288 288 ASP ASP A . n A 1 66 GLY 66 289 289 GLY GLY A . n A 1 67 THR 67 290 290 THR THR A . n A 1 68 GLY 68 291 291 GLY GLY A . n A 1 69 TRP 69 292 292 TRP TRP A . n A 1 70 TYR 70 293 293 TYR TYR A . n A 1 71 TYR 71 294 294 TYR TYR A . n A 1 72 LEU 72 295 295 LEU LEU A . n A 1 73 LYS 73 296 296 LYS LYS A . n A 1 74 PRO 74 297 297 PRO PRO A . n A 1 75 ASP 75 298 298 ASP ASP A . n A 1 76 GLY 76 299 299 GLY GLY A . n A 1 77 THR 77 300 300 THR THR A . n A 1 78 LEU 78 301 301 LEU LEU A . n A 1 79 ALA 79 302 302 ALA ALA A . n A 1 80 ASP 80 303 303 ASP ASP A . n A 1 81 ARG 81 304 304 ARG ARG A . n A 1 82 PRO 82 305 305 PRO PRO A . n A 1 83 GLU 83 306 306 GLU GLU A . n A 1 84 PHE 84 307 307 PHE PHE A . n A 1 85 THR 85 308 308 THR THR A . n A 1 86 VAL 86 309 309 VAL VAL A . n A 1 87 GLU 87 310 310 GLU GLU A . n A 1 88 PRO 88 311 311 PRO PRO A . n A 1 89 ASP 89 312 312 ASP ASP A . n A 1 90 GLY 90 313 313 GLY GLY A . n A 1 91 LEU 91 314 314 LEU LEU A . n A 1 92 ILE 92 315 315 ILE ILE A . n A 1 93 THR 93 316 316 THR THR A . n A 1 94 VAL 94 317 317 VAL VAL A . n A 1 95 LYS 95 318 318 LYS LYS A . n B 1 1 THR 1 224 ? ? ? B . n B 1 2 ASP 2 225 225 ASP ASP B . n B 1 3 GLY 3 226 226 GLY GLY B . n B 1 4 ASN 4 227 227 ASN ASN B . n B 1 5 TRP 5 228 228 TRP TRP B . n B 1 6 TYR 6 229 229 TYR TYR B . n B 1 7 TRP 7 230 230 TRP TRP B . n B 1 8 PHE 8 231 231 PHE PHE B . n B 1 9 ASP 9 232 232 ASP ASP B . n B 1 10 ASN 10 233 233 ASN ASN B . n B 1 11 SER 11 234 234 SER SER B . n B 1 12 GLY 12 235 235 GLY GLY B . n B 1 13 GLU 13 236 236 GLU GLU B . n B 1 14 MSE 14 237 237 MSE MSE B . n B 1 15 ALA 15 238 238 ALA ALA B . n B 1 16 THR 16 239 239 THR THR B . n B 1 17 GLY 17 240 240 GLY GLY B . n B 1 18 TRP 18 241 241 TRP TRP B . n B 1 19 LYS 19 242 242 LYS LYS B . n B 1 20 LYS 20 243 243 LYS LYS B . n B 1 21 ILE 21 244 244 ILE ILE B . n B 1 22 ALA 22 245 245 ALA ALA B . n B 1 23 ASP 23 246 246 ASP ASP B . n B 1 24 LYS 24 247 247 LYS LYS B . n B 1 25 TRP 25 248 248 TRP TRP B . n B 1 26 TYR 26 249 249 TYR TYR B . n B 1 27 TYR 27 250 250 TYR TYR B . n B 1 28 PHE 28 251 251 PHE PHE B . n B 1 29 ASN 29 252 252 ASN ASN B . n B 1 30 GLU 30 253 253 GLU GLU B . n B 1 31 GLU 31 254 254 GLU GLU B . n B 1 32 GLY 32 255 255 GLY GLY B . n B 1 33 ALA 33 256 256 ALA ALA B . n B 1 34 MSE 34 257 257 MSE MSE B . n B 1 35 LYS 35 258 258 LYS LYS B . n B 1 36 THR 36 259 259 THR THR B . n B 1 37 GLY 37 260 260 GLY GLY B . n B 1 38 TRP 38 261 261 TRP TRP B . n B 1 39 VAL 39 262 262 VAL VAL B . n B 1 40 LYS 40 263 263 LYS LYS B . n B 1 41 TYR 41 264 264 TYR TYR B . n B 1 42 LYS 42 265 265 LYS LYS B . n B 1 43 ASP 43 266 266 ASP ASP B . n B 1 44 THR 44 267 267 THR THR B . n B 1 45 TRP 45 268 268 TRP TRP B . n B 1 46 TYR 46 269 269 TYR TYR B . n B 1 47 TYR 47 270 270 TYR TYR B . n B 1 48 LEU 48 271 271 LEU LEU B . n B 1 49 ASP 49 272 272 ASP ASP B . n B 1 50 ALA 50 273 273 ALA ALA B . n B 1 51 LYS 51 274 274 LYS LYS B . n B 1 52 GLU 52 275 275 GLU GLU B . n B 1 53 GLY 53 276 276 GLY GLY B . n B 1 54 ALA 54 277 277 ALA ALA B . n B 1 55 MSE 55 278 278 MSE MSE B . n B 1 56 VAL 56 279 279 VAL VAL B . n B 1 57 SER 57 280 280 SER SER B . n B 1 58 ASN 58 281 281 ASN ASN B . n B 1 59 ALA 59 282 282 ALA ALA B . n B 1 60 PHE 60 283 283 PHE PHE B . n B 1 61 ILE 61 284 284 ILE ILE B . n B 1 62 GLN 62 285 285 GLN GLN B . n B 1 63 SER 63 286 286 SER SER B . n B 1 64 ALA 64 287 287 ALA ALA B . n B 1 65 ASP 65 288 288 ASP ASP B . n B 1 66 GLY 66 289 289 GLY GLY B . n B 1 67 THR 67 290 290 THR THR B . n B 1 68 GLY 68 291 291 GLY GLY B . n B 1 69 TRP 69 292 292 TRP TRP B . n B 1 70 TYR 70 293 293 TYR TYR B . n B 1 71 TYR 71 294 294 TYR TYR B . n B 1 72 LEU 72 295 295 LEU LEU B . n B 1 73 LYS 73 296 296 LYS LYS B . n B 1 74 PRO 74 297 297 PRO PRO B . n B 1 75 ASP 75 298 298 ASP ASP B . n B 1 76 GLY 76 299 299 GLY GLY B . n B 1 77 THR 77 300 300 THR THR B . n B 1 78 LEU 78 301 301 LEU LEU B . n B 1 79 ALA 79 302 302 ALA ALA B . n B 1 80 ASP 80 303 303 ASP ASP B . n B 1 81 ARG 81 304 304 ARG ARG B . n B 1 82 PRO 82 305 305 PRO PRO B . n B 1 83 GLU 83 306 306 GLU GLU B . n B 1 84 PHE 84 307 307 PHE PHE B . n B 1 85 THR 85 308 308 THR THR B . n B 1 86 VAL 86 309 309 VAL VAL B . n B 1 87 GLU 87 310 310 GLU GLU B . n B 1 88 PRO 88 311 311 PRO PRO B . n B 1 89 ASP 89 312 312 ASP ASP B . n B 1 90 GLY 90 313 313 GLY GLY B . n B 1 91 LEU 91 314 314 LEU LEU B . n B 1 92 ILE 92 315 315 ILE ILE B . n B 1 93 THR 93 316 316 THR THR B . n B 1 94 VAL 94 317 317 VAL VAL B . n B 1 95 LYS 95 318 318 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CHT 1 401 401 CHT CHT A . D 2 CHT 1 402 402 CHT CHT A . E 2 CHT 1 403 403 CHT CHT A . F 2 CHT 1 404 404 CHT CHT B . G 2 CHT 1 405 405 CHT CHT B . H 2 CHT 1 406 406 CHT CHT B . I 3 HOH 1 2001 2001 HOH HOH A . I 3 HOH 2 2002 2002 HOH HOH A . I 3 HOH 3 2003 2003 HOH HOH A . I 3 HOH 4 2004 2004 HOH HOH A . I 3 HOH 5 2005 2005 HOH HOH A . I 3 HOH 6 2006 2006 HOH HOH A . I 3 HOH 7 2007 2007 HOH HOH A . I 3 HOH 8 2008 2008 HOH HOH A . I 3 HOH 9 2009 2009 HOH HOH A . I 3 HOH 10 2010 2010 HOH HOH A . I 3 HOH 11 2011 2011 HOH HOH A . I 3 HOH 12 2012 2012 HOH HOH A . I 3 HOH 13 2013 2013 HOH HOH A . I 3 HOH 14 2014 2014 HOH HOH A . I 3 HOH 15 2015 2015 HOH HOH A . I 3 HOH 16 2016 2016 HOH HOH A . I 3 HOH 17 2017 2017 HOH HOH A . I 3 HOH 18 2018 2018 HOH HOH A . I 3 HOH 19 2019 2019 HOH HOH A . I 3 HOH 20 2020 2020 HOH HOH A . I 3 HOH 21 2021 2021 HOH HOH A . I 3 HOH 22 2022 2022 HOH HOH A . I 3 HOH 23 2023 2023 HOH HOH A . I 3 HOH 24 2024 2024 HOH HOH A . I 3 HOH 25 2025 2025 HOH HOH A . I 3 HOH 26 2026 2026 HOH HOH A . J 3 HOH 1 2001 2001 HOH HOH B . J 3 HOH 2 2002 2002 HOH HOH B . J 3 HOH 3 2003 2003 HOH HOH B . J 3 HOH 4 2004 2004 HOH HOH B . J 3 HOH 5 2005 2005 HOH HOH B . J 3 HOH 6 2006 2006 HOH HOH B . J 3 HOH 7 2007 2007 HOH HOH B . J 3 HOH 8 2008 2008 HOH HOH B . J 3 HOH 9 2009 2009 HOH HOH B . J 3 HOH 10 2010 2010 HOH HOH B . J 3 HOH 11 2011 2011 HOH HOH B . J 3 HOH 12 2012 2012 HOH HOH B . J 3 HOH 13 2013 2013 HOH HOH B . J 3 HOH 14 2014 2014 HOH HOH B . J 3 HOH 15 2015 2015 HOH HOH B . J 3 HOH 16 2016 2016 HOH HOH B . J 3 HOH 17 2017 2017 HOH HOH B . J 3 HOH 18 2018 2018 HOH HOH B . J 3 HOH 19 2019 2019 HOH HOH B . J 3 HOH 20 2020 2020 HOH HOH B . J 3 HOH 21 2021 2021 HOH HOH B . J 3 HOH 22 2022 2022 HOH HOH B . J 3 HOH 23 2023 2023 HOH HOH B . J 3 HOH 24 2024 2024 HOH HOH B . J 3 HOH 25 2025 2025 HOH HOH B . J 3 HOH 26 2026 2026 HOH HOH B . J 3 HOH 27 2027 2027 HOH HOH B . J 3 HOH 28 2028 2028 HOH HOH B . J 3 HOH 29 2029 2029 HOH HOH B . J 3 HOH 30 2030 2030 HOH HOH B . J 3 HOH 31 2031 2031 HOH HOH B . J 3 HOH 32 2032 2032 HOH HOH B . J 3 HOH 33 2033 2033 HOH HOH B . J 3 HOH 34 2034 2034 HOH HOH B . J 3 HOH 35 2035 2035 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASP 225 ? CG ? B ASP 2 CG 2 1 Y 1 B ASP 225 ? OD1 ? B ASP 2 OD1 3 1 Y 1 B ASP 225 ? OD2 ? B ASP 2 OD2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1H8G _cell.length_a 97.571 _cell.length_b 97.571 _cell.length_c 68.482 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H8G _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1H8G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.6 _exptl_crystal.density_percent_sol 52 _exptl_crystal.description ;A FIRST STRUCTURE, WHOSE STATISTICS HAVE NOT BEEN SUBMITTED, WAS DETERMINED TO 3.0 ANGSTROM RESOLUTION THROUGH A MAD EXPERIMENT. A SECOND EXPERIMENT WAS THEN PERFORMED ON A SINGLE CRYSTAL. IT IS STRUCTURE REFINED AGAINST THE DATA FROM THIS SECOND EXPERIMENT THAT IS PRESENTED IN THIS ENTRY ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% MPD, 0.2 M NACL, 0.1 M NA-ACETATE, PH 4.6, 0.2 M GUANIDINE-HCL, 0.15 M CHOLINE-CL.' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-07-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9073 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.9073 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1H8G _reflns.observed_criterion_sigma_I 8.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 12997 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.04800 _reflns.pdbx_netI_over_sigmaI 9.7000 _reflns.B_iso_Wilson_estimate 46.3 _reflns.pdbx_redundancy 3.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.36800 _reflns_shell.meanI_over_sigI_obs 1.600 _reflns_shell.pdbx_redundancy 2.70 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1H8G _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12994 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1544106.38 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.31 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.0 _refine.ls_number_reflns_R_free 1046 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.9 _refine.aniso_B[1][1] 7.01 _refine.aniso_B[2][2] 7.01 _refine.aniso_B[3][3] -14.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.344715 _refine.solvent_model_param_bsol 44.6129 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'SEVERAL CYCLES WITH CNS, ONE SHELX CYCLE TO FIND WATER MOLECULES, FINAL CYCLE WITH CNS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1H8G _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.39 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1552 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 32.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.68 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.60 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.76 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.01 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.91 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1953 _refine_ls_shell.R_factor_R_work 0.317 _refine_ls_shell.percent_reflns_obs 97.0 _refine_ls_shell.R_factor_R_free 0.340 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 7.9 _refine_ls_shell.number_reflns_R_free 168 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.755710 _struct_ncs_oper.matrix[1][2] -0.197380 _struct_ncs_oper.matrix[1][3] -0.624460 _struct_ncs_oper.matrix[2][1] -0.252030 _struct_ncs_oper.matrix[2][2] -0.792410 _struct_ncs_oper.matrix[2][3] 0.555480 _struct_ncs_oper.matrix[3][1] -0.604470 _struct_ncs_oper.matrix[3][2] 0.577170 _struct_ncs_oper.matrix[3][3] 0.549080 _struct_ncs_oper.vector[1] 154.17360 _struct_ncs_oper.vector[2] 119.12921 _struct_ncs_oper.vector[3] 17.23518 # _database_PDB_matrix.entry_id 1H8G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1H8G _struct.title 'C-terminal domain of the major autolysin (C-LytA) from Streptococcus pneumoniae' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1H8G _struct_keywords.pdbx_keywords 'CHOLINE-BINDING DOMAIN' _struct_keywords.text 'CHOLINE-BINDING DOMAIN, CELL WALL ATTACHMENT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ALYS_STRPN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P06653 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1H8G A 1 ? 95 ? P06653 224 ? 318 ? 224 318 2 1 1H8G B 1 ? 95 ? P06653 224 ? 318 ? 224 318 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1H8G MSE A 14 ? UNP P06653 MET 237 'modified residue' 237 1 1 1H8G MSE A 34 ? UNP P06653 MET 257 'modified residue' 257 2 1 1H8G MSE A 55 ? UNP P06653 MET 278 'modified residue' 278 3 2 1H8G MSE B 14 ? UNP P06653 MET 237 'modified residue' 237 4 2 1H8G MSE B 34 ? UNP P06653 MET 257 'modified residue' 257 5 2 1H8G MSE B 55 ? UNP P06653 MET 278 'modified residue' 278 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 68.4820000000 # _struct_biol.id 1 _struct_biol.details ;THE CHOLINE-BINDING DOMAIN FRAGMENT CRYSTALLISES AS ATETRAMERIC ASSEMBLY FORMING A CYCLIC DOUGHNUT STRUCTURE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 80 ? PRO A 82 ? ASP A 303 PRO A 305 5 ? 3 HELX_P HELX_P2 2 ASP B 80 ? PRO B 82 ? ASP B 303 PRO B 305 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 13 C ? ? ? 1_555 A MSE 14 N ? ? A GLU 236 A MSE 237 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A ALA 15 N ? ? A MSE 237 A ALA 238 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A ALA 33 C ? ? ? 1_555 A MSE 34 N ? ? A ALA 256 A MSE 257 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 34 C ? ? ? 1_555 A LYS 35 N ? ? A MSE 257 A LYS 258 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? A ALA 54 C ? ? ? 1_555 A MSE 55 N ? ? A ALA 277 A MSE 278 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A MSE 55 C ? ? ? 1_555 A VAL 56 N ? ? A MSE 278 A VAL 279 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? B GLU 13 C ? ? ? 1_555 B MSE 14 N ? ? B GLU 236 B MSE 237 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? B MSE 14 C ? ? ? 1_555 B ALA 15 N ? ? B MSE 237 B ALA 238 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale both ? B ALA 33 C ? ? ? 1_555 B MSE 34 N ? ? B ALA 256 B MSE 257 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? B MSE 34 C ? ? ? 1_555 B LYS 35 N ? ? B MSE 257 B LYS 258 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? B ALA 54 C ? ? ? 1_555 B MSE 55 N ? ? B ALA 277 B MSE 278 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? B MSE 55 C ? ? ? 1_555 B VAL 56 N ? ? B MSE 278 B VAL 279 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 14 ? . . . . MSE A 237 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 34 ? . . . . MSE A 257 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 55 ? . . . . MSE A 278 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 14 ? . . . . MSE B 237 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE B 34 ? . . . . MSE B 257 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE B 55 ? . . . . MSE B 278 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details CC ? 2 ? AA ? 2 ? AB ? 2 ? AC ? 2 ? AD ? 2 ? BA ? 2 ? BB ? 2 ? BC ? 2 ? BD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense CC 1 2 ? anti-parallel AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel BA 1 2 ? anti-parallel BB 1 2 ? anti-parallel BC 1 2 ? anti-parallel BD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id CC 1 ASN A 4 ? PHE A 8 ? ASN A 227 PHE A 231 CC 2 ASN B 4 ? PHE B 8 ? ASN B 227 PHE B 231 AA 1 GLY A 17 ? ILE A 21 ? GLY A 240 ILE A 244 AA 2 LYS A 24 ? PHE A 28 ? LYS A 247 PHE A 251 AB 1 GLY A 37 ? TYR A 41 ? GLY A 260 TYR A 264 AB 2 THR A 44 ? LEU A 48 ? THR A 267 LEU A 271 AC 1 ALA A 59 ? SER A 63 ? ALA A 282 SER A 286 AC 2 GLY A 68 ? LEU A 72 ? GLY A 291 LEU A 295 AD 1 GLU A 83 ? GLU A 87 ? GLU A 306 GLU A 310 AD 2 LEU A 91 ? LYS A 95 ? LEU A 314 LYS A 318 BA 1 GLY B 17 ? ILE B 21 ? GLY B 240 ILE B 244 BA 2 LYS B 24 ? PHE B 28 ? LYS B 247 PHE B 251 BB 1 GLY B 37 ? TYR B 41 ? GLY B 260 TYR B 264 BB 2 THR B 44 ? LEU B 48 ? THR B 267 LEU B 271 BC 1 ALA B 59 ? SER B 63 ? ALA B 282 SER B 286 BC 2 GLY B 68 ? LEU B 72 ? GLY B 291 LEU B 295 BD 1 GLU B 83 ? GLU B 87 ? GLU B 306 GLU B 310 BD 2 LEU B 91 ? LYS B 95 ? LEU B 314 LYS B 318 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id CC 1 2 N PHE A 8 ? N PHE A 231 O ASN B 4 ? O ASN B 227 AA 1 2 O GLY A 17 ? O GLY A 240 N PHE A 28 ? N PHE A 251 AB 1 2 N GLY A 37 ? N GLY A 260 O LEU A 48 ? O LEU A 271 AC 1 2 O ALA A 59 ? O ALA A 282 N LEU A 72 ? N LEU A 295 AD 1 2 N GLU A 83 ? N GLU A 306 O LYS A 95 ? O LYS A 318 BA 1 2 O GLY B 17 ? O GLY B 240 N PHE B 28 ? N PHE B 251 BB 1 2 N GLY B 37 ? N GLY B 260 O LEU B 48 ? O LEU B 271 BC 1 2 O ALA B 59 ? O ALA B 282 N LEU B 72 ? N LEU B 295 BD 1 2 N GLU B 83 ? N GLU B 306 O LYS B 95 ? O LYS B 318 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CHT 401 ? 2 'BINDING SITE FOR RESIDUE CHT A 401' AC2 Software A CHT 402 ? 3 'BINDING SITE FOR RESIDUE CHT A 402' AC3 Software A CHT 403 ? 1 'BINDING SITE FOR RESIDUE CHT A 403' AC4 Software B CHT 404 ? 5 'BINDING SITE FOR RESIDUE CHT B 404' AC5 Software B CHT 405 ? 3 'BINDING SITE FOR RESIDUE CHT B 405' AC6 Software B CHT 406 ? 1 'BINDING SITE FOR RESIDUE CHT B 406' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TRP A 38 ? TRP A 261 . ? 1_555 ? 2 AC1 2 TYR A 70 ? TYR A 293 . ? 1_555 ? 3 AC2 3 TRP A 25 ? TRP A 248 . ? 1_555 ? 4 AC2 3 TYR A 46 ? TYR A 269 . ? 1_555 ? 5 AC2 3 ASP A 75 ? ASP A 298 . ? 1_555 ? 6 AC3 1 TYR A 6 ? TYR A 229 . ? 1_555 ? 7 AC4 5 THR A 1 ? THR A 224 . ? 1_555 ? 8 AC4 5 ASP A 89 ? ASP A 312 . ? 1_555 ? 9 AC4 5 LYS B 19 ? LYS B 242 . ? 1_555 ? 10 AC4 5 TRP B 38 ? TRP B 261 . ? 1_555 ? 11 AC4 5 LEU B 78 ? LEU B 301 . ? 1_555 ? 12 AC5 3 LYS A 51 ? LYS A 274 . ? 1_555 ? 13 AC5 3 GLU A 52 ? GLU A 275 . ? 1_555 ? 14 AC5 3 TYR B 26 ? TYR B 249 . ? 1_555 ? 15 AC6 1 TYR B 6 ? TYR B 229 . ? 1_555 ? # _pdbx_entry_details.entry_id 1H8G _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 265 ? ? 53.13 76.00 2 1 ASP A 266 ? ? 75.65 -21.79 3 1 LYS B 274 ? ? -80.38 -80.41 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 237 ? MET SELENOMETHIONINE 2 A MSE 34 A MSE 257 ? MET SELENOMETHIONINE 3 A MSE 55 A MSE 278 ? MET SELENOMETHIONINE 4 B MSE 14 B MSE 237 ? MET SELENOMETHIONINE 5 B MSE 34 B MSE 257 ? MET SELENOMETHIONINE 6 B MSE 55 B MSE 278 ? MET SELENOMETHIONINE # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id THR _pdbx_unobs_or_zero_occ_residues.auth_seq_id 224 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id THR _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CHT C4 C N N 74 CHT C5 C N N 75 CHT C6 C N N 76 CHT C7 C N N 77 CHT C8 C N N 78 CHT O6 O N N 79 CHT N1 N N N 80 CHT HC41 H N N 81 CHT HC42 H N N 82 CHT HC51 H N N 83 CHT HC52 H N N 84 CHT H61 H N N 85 CHT H62 H N N 86 CHT H63 H N N 87 CHT H71 H N N 88 CHT H72 H N N 89 CHT H73 H N N 90 CHT H81 H N N 91 CHT H82 H N N 92 CHT H83 H N N 93 CHT HO6 H N N 94 GLN N N N N 95 GLN CA C N S 96 GLN C C N N 97 GLN O O N N 98 GLN CB C N N 99 GLN CG C N N 100 GLN CD C N N 101 GLN OE1 O N N 102 GLN NE2 N N N 103 GLN OXT O N N 104 GLN H H N N 105 GLN H2 H N N 106 GLN HA H N N 107 GLN HB2 H N N 108 GLN HB3 H N N 109 GLN HG2 H N N 110 GLN HG3 H N N 111 GLN HE21 H N N 112 GLN HE22 H N N 113 GLN HXT H N N 114 GLU N N N N 115 GLU CA C N S 116 GLU C C N N 117 GLU O O N N 118 GLU CB C N N 119 GLU CG C N N 120 GLU CD C N N 121 GLU OE1 O N N 122 GLU OE2 O N N 123 GLU OXT O N N 124 GLU H H N N 125 GLU H2 H N N 126 GLU HA H N N 127 GLU HB2 H N N 128 GLU HB3 H N N 129 GLU HG2 H N N 130 GLU HG3 H N N 131 GLU HE2 H N N 132 GLU HXT H N N 133 GLY N N N N 134 GLY CA C N N 135 GLY C C N N 136 GLY O O N N 137 GLY OXT O N N 138 GLY H H N N 139 GLY H2 H N N 140 GLY HA2 H N N 141 GLY HA3 H N N 142 GLY HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MSE N N N N 236 MSE CA C N S 237 MSE C C N N 238 MSE O O N N 239 MSE OXT O N N 240 MSE CB C N N 241 MSE CG C N N 242 MSE SE SE N N 243 MSE CE C N N 244 MSE H H N N 245 MSE H2 H N N 246 MSE HA H N N 247 MSE HXT H N N 248 MSE HB2 H N N 249 MSE HB3 H N N 250 MSE HG2 H N N 251 MSE HG3 H N N 252 MSE HE1 H N N 253 MSE HE2 H N N 254 MSE HE3 H N N 255 PHE N N N N 256 PHE CA C N S 257 PHE C C N N 258 PHE O O N N 259 PHE CB C N N 260 PHE CG C Y N 261 PHE CD1 C Y N 262 PHE CD2 C Y N 263 PHE CE1 C Y N 264 PHE CE2 C Y N 265 PHE CZ C Y N 266 PHE OXT O N N 267 PHE H H N N 268 PHE H2 H N N 269 PHE HA H N N 270 PHE HB2 H N N 271 PHE HB3 H N N 272 PHE HD1 H N N 273 PHE HD2 H N N 274 PHE HE1 H N N 275 PHE HE2 H N N 276 PHE HZ H N N 277 PHE HXT H N N 278 PRO N N N N 279 PRO CA C N S 280 PRO C C N N 281 PRO O O N N 282 PRO CB C N N 283 PRO CG C N N 284 PRO CD C N N 285 PRO OXT O N N 286 PRO H H N N 287 PRO HA H N N 288 PRO HB2 H N N 289 PRO HB3 H N N 290 PRO HG2 H N N 291 PRO HG3 H N N 292 PRO HD2 H N N 293 PRO HD3 H N N 294 PRO HXT H N N 295 SER N N N N 296 SER CA C N S 297 SER C C N N 298 SER O O N N 299 SER CB C N N 300 SER OG O N N 301 SER OXT O N N 302 SER H H N N 303 SER H2 H N N 304 SER HA H N N 305 SER HB2 H N N 306 SER HB3 H N N 307 SER HG H N N 308 SER HXT H N N 309 THR N N N N 310 THR CA C N S 311 THR C C N N 312 THR O O N N 313 THR CB C N R 314 THR OG1 O N N 315 THR CG2 C N N 316 THR OXT O N N 317 THR H H N N 318 THR H2 H N N 319 THR HA H N N 320 THR HB H N N 321 THR HG1 H N N 322 THR HG21 H N N 323 THR HG22 H N N 324 THR HG23 H N N 325 THR HXT H N N 326 TRP N N N N 327 TRP CA C N S 328 TRP C C N N 329 TRP O O N N 330 TRP CB C N N 331 TRP CG C Y N 332 TRP CD1 C Y N 333 TRP CD2 C Y N 334 TRP NE1 N Y N 335 TRP CE2 C Y N 336 TRP CE3 C Y N 337 TRP CZ2 C Y N 338 TRP CZ3 C Y N 339 TRP CH2 C Y N 340 TRP OXT O N N 341 TRP H H N N 342 TRP H2 H N N 343 TRP HA H N N 344 TRP HB2 H N N 345 TRP HB3 H N N 346 TRP HD1 H N N 347 TRP HE1 H N N 348 TRP HE3 H N N 349 TRP HZ2 H N N 350 TRP HZ3 H N N 351 TRP HH2 H N N 352 TRP HXT H N N 353 TYR N N N N 354 TYR CA C N S 355 TYR C C N N 356 TYR O O N N 357 TYR CB C N N 358 TYR CG C Y N 359 TYR CD1 C Y N 360 TYR CD2 C Y N 361 TYR CE1 C Y N 362 TYR CE2 C Y N 363 TYR CZ C Y N 364 TYR OH O N N 365 TYR OXT O N N 366 TYR H H N N 367 TYR H2 H N N 368 TYR HA H N N 369 TYR HB2 H N N 370 TYR HB3 H N N 371 TYR HD1 H N N 372 TYR HD2 H N N 373 TYR HE1 H N N 374 TYR HE2 H N N 375 TYR HH H N N 376 TYR HXT H N N 377 VAL N N N N 378 VAL CA C N S 379 VAL C C N N 380 VAL O O N N 381 VAL CB C N N 382 VAL CG1 C N N 383 VAL CG2 C N N 384 VAL OXT O N N 385 VAL H H N N 386 VAL H2 H N N 387 VAL HA H N N 388 VAL HB H N N 389 VAL HG11 H N N 390 VAL HG12 H N N 391 VAL HG13 H N N 392 VAL HG21 H N N 393 VAL HG22 H N N 394 VAL HG23 H N N 395 VAL HXT H N N 396 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CHT C4 C5 sing N N 70 CHT C4 O6 sing N N 71 CHT C4 HC41 sing N N 72 CHT C4 HC42 sing N N 73 CHT C5 N1 sing N N 74 CHT C5 HC51 sing N N 75 CHT C5 HC52 sing N N 76 CHT C6 N1 sing N N 77 CHT C6 H61 sing N N 78 CHT C6 H62 sing N N 79 CHT C6 H63 sing N N 80 CHT C7 N1 sing N N 81 CHT C7 H71 sing N N 82 CHT C7 H72 sing N N 83 CHT C7 H73 sing N N 84 CHT C8 N1 sing N N 85 CHT C8 H81 sing N N 86 CHT C8 H82 sing N N 87 CHT C8 H83 sing N N 88 CHT O6 HO6 sing N N 89 GLN N CA sing N N 90 GLN N H sing N N 91 GLN N H2 sing N N 92 GLN CA C sing N N 93 GLN CA CB sing N N 94 GLN CA HA sing N N 95 GLN C O doub N N 96 GLN C OXT sing N N 97 GLN CB CG sing N N 98 GLN CB HB2 sing N N 99 GLN CB HB3 sing N N 100 GLN CG CD sing N N 101 GLN CG HG2 sing N N 102 GLN CG HG3 sing N N 103 GLN CD OE1 doub N N 104 GLN CD NE2 sing N N 105 GLN NE2 HE21 sing N N 106 GLN NE2 HE22 sing N N 107 GLN OXT HXT sing N N 108 GLU N CA sing N N 109 GLU N H sing N N 110 GLU N H2 sing N N 111 GLU CA C sing N N 112 GLU CA CB sing N N 113 GLU CA HA sing N N 114 GLU C O doub N N 115 GLU C OXT sing N N 116 GLU CB CG sing N N 117 GLU CB HB2 sing N N 118 GLU CB HB3 sing N N 119 GLU CG CD sing N N 120 GLU CG HG2 sing N N 121 GLU CG HG3 sing N N 122 GLU CD OE1 doub N N 123 GLU CD OE2 sing N N 124 GLU OE2 HE2 sing N N 125 GLU OXT HXT sing N N 126 GLY N CA sing N N 127 GLY N H sing N N 128 GLY N H2 sing N N 129 GLY CA C sing N N 130 GLY CA HA2 sing N N 131 GLY CA HA3 sing N N 132 GLY C O doub N N 133 GLY C OXT sing N N 134 GLY OXT HXT sing N N 135 HOH O H1 sing N N 136 HOH O H2 sing N N 137 ILE N CA sing N N 138 ILE N H sing N N 139 ILE N H2 sing N N 140 ILE CA C sing N N 141 ILE CA CB sing N N 142 ILE CA HA sing N N 143 ILE C O doub N N 144 ILE C OXT sing N N 145 ILE CB CG1 sing N N 146 ILE CB CG2 sing N N 147 ILE CB HB sing N N 148 ILE CG1 CD1 sing N N 149 ILE CG1 HG12 sing N N 150 ILE CG1 HG13 sing N N 151 ILE CG2 HG21 sing N N 152 ILE CG2 HG22 sing N N 153 ILE CG2 HG23 sing N N 154 ILE CD1 HD11 sing N N 155 ILE CD1 HD12 sing N N 156 ILE CD1 HD13 sing N N 157 ILE OXT HXT sing N N 158 LEU N CA sing N N 159 LEU N H sing N N 160 LEU N H2 sing N N 161 LEU CA C sing N N 162 LEU CA CB sing N N 163 LEU CA HA sing N N 164 LEU C O doub N N 165 LEU C OXT sing N N 166 LEU CB CG sing N N 167 LEU CB HB2 sing N N 168 LEU CB HB3 sing N N 169 LEU CG CD1 sing N N 170 LEU CG CD2 sing N N 171 LEU CG HG sing N N 172 LEU CD1 HD11 sing N N 173 LEU CD1 HD12 sing N N 174 LEU CD1 HD13 sing N N 175 LEU CD2 HD21 sing N N 176 LEU CD2 HD22 sing N N 177 LEU CD2 HD23 sing N N 178 LEU OXT HXT sing N N 179 LYS N CA sing N N 180 LYS N H sing N N 181 LYS N H2 sing N N 182 LYS CA C sing N N 183 LYS CA CB sing N N 184 LYS CA HA sing N N 185 LYS C O doub N N 186 LYS C OXT sing N N 187 LYS CB CG sing N N 188 LYS CB HB2 sing N N 189 LYS CB HB3 sing N N 190 LYS CG CD sing N N 191 LYS CG HG2 sing N N 192 LYS CG HG3 sing N N 193 LYS CD CE sing N N 194 LYS CD HD2 sing N N 195 LYS CD HD3 sing N N 196 LYS CE NZ sing N N 197 LYS CE HE2 sing N N 198 LYS CE HE3 sing N N 199 LYS NZ HZ1 sing N N 200 LYS NZ HZ2 sing N N 201 LYS NZ HZ3 sing N N 202 LYS OXT HXT sing N N 203 MET N CA sing N N 204 MET N H sing N N 205 MET N H2 sing N N 206 MET CA C sing N N 207 MET CA CB sing N N 208 MET CA HA sing N N 209 MET C O doub N N 210 MET C OXT sing N N 211 MET CB CG sing N N 212 MET CB HB2 sing N N 213 MET CB HB3 sing N N 214 MET CG SD sing N N 215 MET CG HG2 sing N N 216 MET CG HG3 sing N N 217 MET SD CE sing N N 218 MET CE HE1 sing N N 219 MET CE HE2 sing N N 220 MET CE HE3 sing N N 221 MET OXT HXT sing N N 222 MSE N CA sing N N 223 MSE N H sing N N 224 MSE N H2 sing N N 225 MSE CA C sing N N 226 MSE CA CB sing N N 227 MSE CA HA sing N N 228 MSE C O doub N N 229 MSE C OXT sing N N 230 MSE OXT HXT sing N N 231 MSE CB CG sing N N 232 MSE CB HB2 sing N N 233 MSE CB HB3 sing N N 234 MSE CG SE sing N N 235 MSE CG HG2 sing N N 236 MSE CG HG3 sing N N 237 MSE SE CE sing N N 238 MSE CE HE1 sing N N 239 MSE CE HE2 sing N N 240 MSE CE HE3 sing N N 241 PHE N CA sing N N 242 PHE N H sing N N 243 PHE N H2 sing N N 244 PHE CA C sing N N 245 PHE CA CB sing N N 246 PHE CA HA sing N N 247 PHE C O doub N N 248 PHE C OXT sing N N 249 PHE CB CG sing N N 250 PHE CB HB2 sing N N 251 PHE CB HB3 sing N N 252 PHE CG CD1 doub Y N 253 PHE CG CD2 sing Y N 254 PHE CD1 CE1 sing Y N 255 PHE CD1 HD1 sing N N 256 PHE CD2 CE2 doub Y N 257 PHE CD2 HD2 sing N N 258 PHE CE1 CZ doub Y N 259 PHE CE1 HE1 sing N N 260 PHE CE2 CZ sing Y N 261 PHE CE2 HE2 sing N N 262 PHE CZ HZ sing N N 263 PHE OXT HXT sing N N 264 PRO N CA sing N N 265 PRO N CD sing N N 266 PRO N H sing N N 267 PRO CA C sing N N 268 PRO CA CB sing N N 269 PRO CA HA sing N N 270 PRO C O doub N N 271 PRO C OXT sing N N 272 PRO CB CG sing N N 273 PRO CB HB2 sing N N 274 PRO CB HB3 sing N N 275 PRO CG CD sing N N 276 PRO CG HG2 sing N N 277 PRO CG HG3 sing N N 278 PRO CD HD2 sing N N 279 PRO CD HD3 sing N N 280 PRO OXT HXT sing N N 281 SER N CA sing N N 282 SER N H sing N N 283 SER N H2 sing N N 284 SER CA C sing N N 285 SER CA CB sing N N 286 SER CA HA sing N N 287 SER C O doub N N 288 SER C OXT sing N N 289 SER CB OG sing N N 290 SER CB HB2 sing N N 291 SER CB HB3 sing N N 292 SER OG HG sing N N 293 SER OXT HXT sing N N 294 THR N CA sing N N 295 THR N H sing N N 296 THR N H2 sing N N 297 THR CA C sing N N 298 THR CA CB sing N N 299 THR CA HA sing N N 300 THR C O doub N N 301 THR C OXT sing N N 302 THR CB OG1 sing N N 303 THR CB CG2 sing N N 304 THR CB HB sing N N 305 THR OG1 HG1 sing N N 306 THR CG2 HG21 sing N N 307 THR CG2 HG22 sing N N 308 THR CG2 HG23 sing N N 309 THR OXT HXT sing N N 310 TRP N CA sing N N 311 TRP N H sing N N 312 TRP N H2 sing N N 313 TRP CA C sing N N 314 TRP CA CB sing N N 315 TRP CA HA sing N N 316 TRP C O doub N N 317 TRP C OXT sing N N 318 TRP CB CG sing N N 319 TRP CB HB2 sing N N 320 TRP CB HB3 sing N N 321 TRP CG CD1 doub Y N 322 TRP CG CD2 sing Y N 323 TRP CD1 NE1 sing Y N 324 TRP CD1 HD1 sing N N 325 TRP CD2 CE2 doub Y N 326 TRP CD2 CE3 sing Y N 327 TRP NE1 CE2 sing Y N 328 TRP NE1 HE1 sing N N 329 TRP CE2 CZ2 sing Y N 330 TRP CE3 CZ3 doub Y N 331 TRP CE3 HE3 sing N N 332 TRP CZ2 CH2 doub Y N 333 TRP CZ2 HZ2 sing N N 334 TRP CZ3 CH2 sing Y N 335 TRP CZ3 HZ3 sing N N 336 TRP CH2 HH2 sing N N 337 TRP OXT HXT sing N N 338 TYR N CA sing N N 339 TYR N H sing N N 340 TYR N H2 sing N N 341 TYR CA C sing N N 342 TYR CA CB sing N N 343 TYR CA HA sing N N 344 TYR C O doub N N 345 TYR C OXT sing N N 346 TYR CB CG sing N N 347 TYR CB HB2 sing N N 348 TYR CB HB3 sing N N 349 TYR CG CD1 doub Y N 350 TYR CG CD2 sing Y N 351 TYR CD1 CE1 sing Y N 352 TYR CD1 HD1 sing N N 353 TYR CD2 CE2 doub Y N 354 TYR CD2 HD2 sing N N 355 TYR CE1 CZ doub Y N 356 TYR CE1 HE1 sing N N 357 TYR CE2 CZ sing Y N 358 TYR CE2 HE2 sing N N 359 TYR CZ OH sing N N 360 TYR OH HH sing N N 361 TYR OXT HXT sing N N 362 VAL N CA sing N N 363 VAL N H sing N N 364 VAL N H2 sing N N 365 VAL CA C sing N N 366 VAL CA CB sing N N 367 VAL CA HA sing N N 368 VAL C O doub N N 369 VAL C OXT sing N N 370 VAL CB CG1 sing N N 371 VAL CB CG2 sing N N 372 VAL CB HB sing N N 373 VAL CG1 HG11 sing N N 374 VAL CG1 HG12 sing N N 375 VAL CG1 HG13 sing N N 376 VAL CG2 HG21 sing N N 377 VAL CG2 HG22 sing N N 378 VAL CG2 HG23 sing N N 379 VAL OXT HXT sing N N 380 # _atom_sites.entry_id 1H8G _atom_sites.fract_transf_matrix[1][1] 0.010249 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010249 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014602 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_