HEADER ENDOCYTOSIS/EXOCYTOSIS 10-FEB-01 1H8M TITLE SOLUTION STRUCTURE OF YKT6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOBREVIN HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS ENDOCYTOSIS/EXOCYTOSIS, TRANSMEMBRANE LIPOPROTEIN, PRENYLATION, KEYWDS 2 ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR H.TOCHIO,M.M.K.TSUI,D.K.BANFIELD,M.ZHANG REVDAT 4 15-MAY-24 1H8M 1 REMARK REVDAT 3 24-FEB-09 1H8M 1 VERSN REVDAT 2 04-JUL-03 1H8M 1 SOURCE REVDAT 1 07-AUG-01 1H8M 0 JRNL AUTH H.TOCHIO,M.M.K.TSUI,D.K.BANFIELD,M.ZHANG JRNL TITL AN AUTOINHIBITORY MECHANISM FOR NONSYNTAXIN SNARE PROTEINS JRNL TITL 2 REVEALED BY THE STRUCTURE OF YKT6P JRNL REF SCIENCE V. 293 698 2001 JRNL REFN ISSN 0036-8075 JRNL PMID 11474112 JRNL DOI 10.1126/SCIENCE.1062950 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : 1.0 REMARK 3 AUTHORS : BRUNGER STRUCTURAL STATISTICS: RMSD SD NOE REMARK 3 DISTANCE RESTRAINTS (2350) 0.025 A 0.001 A REMARK 3 DIHEDRAL ANGLE RESTRAINTS (157) 0.584 DEG 0.036 REMARK 3 DEG BONDS 0.003 A 0.000 A ANGLES 0.435 DEG 0.012 REMARK 3 DEG IMPROPERS 0.336 DEG 0.014 DEG DIHEDRALS 29.969 REMARK 3 DEG 0.887 DEG ENOE -30.74 40.95 ECDIH 3.28 0.40 REMARK 3 EBOND 14.68 1.25 EANGLE 115.61 6.40 EI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1290005885. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 18 104.16 -49.77 REMARK 500 LEU A 25 74.10 -114.02 REMARK 500 ALA A 53 140.54 63.46 REMARK 500 ASN A 63 -42.59 -179.73 REMARK 500 SER A 72 36.35 -98.57 REMARK 500 PRO A 86 161.29 -47.53 REMARK 500 PRO A 106 149.46 -33.00 REMARK 500 ALA A 111 55.52 37.24 REMARK 500 ASP A 112 -38.63 100.86 REMARK 500 VAL A 113 104.85 59.45 REMARK 500 GLU A 115 96.96 -161.94 REMARK 500 ASN A 117 177.80 175.55 REMARK 500 LYS A 121 178.90 61.75 REMARK 500 MET A 122 105.33 -165.00 REMARK 500 GLN A 124 -70.79 -66.82 REMARK 500 GLN A 133 -36.39 -39.01 REMARK 500 ASP A 134 -173.51 -62.22 REMARK 500 SER A 136 -33.58 -150.10 REMARK 500 ASP A 139 60.94 60.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 1H8M A 1 140 UNP P36015 YKT6_YEAST 1 140 SEQADV 1H8M GLU A 55 UNP P36015 GLN 55 CONFLICT SEQADV 1H8M GLN A 84 UNP P36015 GLU 84 CONFLICT SEQRES 1 A 140 MET ARG ILE TYR TYR ILE GLY VAL PHE ARG SER GLY GLY SEQRES 2 A 140 GLU LYS ALA LEU GLU LEU SER GLU VAL LYS ASP LEU SER SEQRES 3 A 140 GLN PHE GLY PHE PHE GLU ARG SER SER VAL GLY GLN PHE SEQRES 4 A 140 MET THR PHE PHE ALA GLU THR VAL ALA SER ARG THR GLY SEQRES 5 A 140 ALA GLY GLU ARG GLN SER ILE GLU GLU GLY ASN TYR ILE SEQRES 6 A 140 GLY HIS VAL TYR ALA ARG SER GLU GLY ILE CYS GLY VAL SEQRES 7 A 140 LEU ILE THR ASP LYS GLN TYR PRO VAL ARG PRO ALA TYR SEQRES 8 A 140 THR LEU LEU ASN LYS ILE LEU ASP GLU TYR LEU VAL ALA SEQRES 9 A 140 HIS PRO LYS GLU GLU TRP ALA ASP VAL THR GLU THR ASN SEQRES 10 A 140 ASP ALA LEU LYS MET LYS GLN LEU ASP THR TYR ILE SER SEQRES 11 A 140 LYS TYR GLN ASP PRO SER GLN ALA ASP ALA HELIX 1 1 PHE A 31 THR A 51 1 21 HELIX 2 2 PRO A 86 HIS A 105 1 20 HELIX 3 3 PRO A 106 ALA A 111 1 6 HELIX 4 4 MET A 122 TYR A 132 1 11 SHEET 1 A 5 ALA A 16 LYS A 23 0 SHEET 2 A 5 ILE A 3 SER A 11 -1 O ILE A 6 N VAL A 22 SHEET 3 A 5 ILE A 75 THR A 81 -1 O CYS A 76 N PHE A 9 SHEET 4 A 5 ILE A 65 TYR A 69 -1 O ILE A 65 N THR A 81 SHEET 5 A 5 ILE A 59 GLU A 60 -1 N ILE A 59 O GLY A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000