HEADER TRANSFERASE 07-MAR-01 1H9C TITLE NMR STRUCTURE OF CYSTEINYL-PHOSPHORYLATED ENZYME IIB OF THE N,N'- TITLE 2 DIACETYLCHITOBIOSE SPECIFIC PHOSPHOENOLPYRUVATE-DEPENDENT TITLE 3 PHOSPHOTRANSFERASE SYSTEM OF ESCHERICHIA COLI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS SYSTEM, CHITOBIOSE-SPECIFIC IIB COMPONENT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIIB-CEL, EIIB-CHB; COMPND 5 EC: 2.7.1.69; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATION AT RESIDUE CYS10 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 316407; SOURCE 4 STRAIN: W3110; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 GENE: CHBB [PREV CELA]; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: W3110; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PJR-BLIIB KEYWDS TRANSFERASE, ENZYME IIB-CHITOBIOSE, PHOSPHOTRANSFERASE SYSTEM, SUGAR KEYWDS 2 TRANSPORT, PHOSPHORYLATION, IIB- CELLOBIOSE EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR E.AB,G.K.SCHUURMAN-WOLTERS,D.NIJLANT,K.DIJKSTRA,M.H.SAIER, AUTHOR 2 G.T.ROBILLARD,R.M.SCHEEK REVDAT 4 23-OCT-24 1H9C 1 LINK REVDAT 3 31-JAN-18 1H9C 1 SOURCE JRNL REMARK REVDAT 2 24-FEB-09 1H9C 1 VERSN REVDAT 1 21-MAY-01 1H9C 0 JRNL AUTH E.AB,G.K.SCHUURMAN-WOLTERS,D.NIJLANT,K.DIJKSTRA,M.H.SAIER, JRNL AUTH 2 G.T.ROBILLARD,R.M.SCHEEK JRNL TITL NMR STRUCTURE OF CYSTEINYL-PHOSPHORYLATED ENZYME IIB OF THE JRNL TITL 2 N,N'-DIACETYLCHITOBIOSE SPECIFIC JRNL TITL 3 PHOSPHOENOLPYRUVATE-DEPENDENTPHOSPHOTRANSFERASE SYSTEM OF JRNL TITL 4 ESCHERICHIA COLI JRNL REF J.MOL.BIOL. V. 308 993 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11352587 JRNL DOI 10.1006/JMBI.2001.4623 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.AB,G.SCHUURMAN-WOLTERS,J.REIZER,M.H.SAIER,K.DIJKSTRA, REMARK 1 AUTH 2 R.M.SCHEEK,G.T.ROBILLARD REMARK 1 TITL THE NMR SIDE-CHAIN ASSIGNMENTS AND SOLUTION STRUCTURE OF REMARK 1 TITL 2 ENZYME IIBCELLOBIOSE OF THE PHOSPHOENOLPYRUVATE-DEPENDENT REMARK 1 TITL 3 PHOSPHOTRANSFERASE SYSTEM OF ESCHERICHIA COLI REMARK 1 REF PROTEIN SCI. V. 6 304 1997 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 9041631 REMARK 1 DOI 10.1002/PRO.5560060205 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.AB,G.K.SCHUURMAN-WOLTERS,M.H.SAIER,J.REIZER,M.JACUINOD, REMARK 1 AUTH 2 P.ROEPSTORFF,K.DIJKSTRA,R.M.SCHEEK,G.T.ROBILLARD REMARK 1 TITL ENZYME IIBCELLOBIOSE OF THE PHOSPHOENOL-PYRUVATE-DEPENDENT REMARK 1 TITL 2 PHOSPHOTRANSFERASE SYSTEM OF ESCHERICHIA COLI: BACKBONE REMARK 1 TITL 3 ASSIGNMENT AND SECONDARY STRUCTURE DETERMINED BY REMARK 1 TITL 4 THREE-DIMENSIONAL NMR SPECTROSCOPY REMARK 1 REF PROTEIN SCI. V. 3 282 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 8003964 REMARK 1 DOI 10.1002/PRO.5560030212 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.L.PARKER,B.G.HALL REMARK 1 TITL CHARACTERIZATION AND NUCLEOTIDE SEQUENCE OF THE CRYPTIC CEL REMARK 1 TITL 2 OPERON OF ESCHERICHIA COLI K12 REMARK 1 REF GENETICS V. 124 455 1990 REMARK 1 REFN ISSN 0016-6731 REMARK 1 PMID 2179047 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.REIZER,A.REIZER,M.H.SAIER JR REMARK 1 TITL THE CELLOBIOSE PERMEASE OF ESCHERICHIA COLI CONSISTS OF REMARK 1 TITL 2 THREE PROTEINS AND IS HOMOLOGOUS TO THE LACTOSE PERMEASE OF REMARK 1 TITL 3 STAPHYLOCOCCUS AUREUS REMARK 1 REF RES.MICROBIOL. V. 141 1061 1990 REMARK 1 REFN ISSN 0923-2508 REMARK 1 PMID 2092358 REMARK 1 DOI 10.1016/0923-2508(90)90079-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMACS REMARK 3 AUTHORS : VAN DER SPOEL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1H9C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1290005879. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SNARF, DDD, GROMACS REMARK 210 METHOD USED : DISTANCE GEOMETRY, RESTRAINED REMARK 210 MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 33 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET-FUNCTION, R-FACTOR, REMARK 210 NUMBER OF VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 COMPONENT OF THE PHOSPHOENOLPYRUVATE-DEPENDENT SUGAR REMARK 400 PHOSPHOTRANSFERASE SYSTEM (PTS) REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 7 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 TYR A 30 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 TYR A 7 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 3 TYR A 7 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 4 TYR A 7 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 5 TYR A 7 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 6 TYR A 7 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 7 TYR A 7 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 8 TYR A 7 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 9 TYR A 7 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 31 56.92 31.95 REMARK 500 1 ALA A 105 -169.09 -163.27 REMARK 500 2 MET A 14 -71.15 -115.25 REMARK 500 2 GLU A 31 63.19 29.28 REMARK 500 2 ALA A 105 94.92 137.45 REMARK 500 3 GLU A 31 64.85 28.31 REMARK 500 3 VAL A 87 70.22 58.35 REMARK 500 3 ALA A 104 -73.99 -68.05 REMARK 500 3 ALA A 105 87.09 -169.15 REMARK 500 4 LYS A 3 146.98 63.23 REMARK 500 4 ALA A 104 33.39 -91.88 REMARK 500 4 ALA A 105 105.83 59.61 REMARK 500 5 GLU A 31 68.29 22.57 REMARK 500 5 ALA A 105 59.39 -104.19 REMARK 500 6 GLU A 2 126.65 64.20 REMARK 500 6 GLU A 31 58.31 28.07 REMARK 500 6 VAL A 87 59.29 39.14 REMARK 500 6 ALA A 104 -32.61 62.85 REMARK 500 6 ALA A 105 128.82 120.56 REMARK 500 7 MET A 14 -72.36 -106.34 REMARK 500 7 GLU A 31 65.05 32.47 REMARK 500 7 LYS A 101 -41.22 57.24 REMARK 500 7 LYS A 102 84.22 111.77 REMARK 500 7 ALA A 104 76.01 48.37 REMARK 500 7 ALA A 105 76.43 28.39 REMARK 500 8 GLU A 2 78.05 62.41 REMARK 500 8 GLU A 31 69.20 29.53 REMARK 500 8 ALA A 105 98.97 159.92 REMARK 500 9 LYS A 3 147.60 67.53 REMARK 500 9 MET A 14 -71.37 -101.60 REMARK 500 9 GLU A 31 69.76 30.32 REMARK 500 9 LYS A 101 1.09 -61.56 REMARK 500 9 LYS A 102 70.48 75.33 REMARK 500 9 ALA A 105 81.25 28.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 100 LYS A 101 7 -147.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 30 0.08 SIDE CHAIN REMARK 500 1 TYR A 84 0.07 SIDE CHAIN REMARK 500 2 TYR A 7 0.07 SIDE CHAIN REMARK 500 3 TYR A 7 0.07 SIDE CHAIN REMARK 500 3 TYR A 30 0.07 SIDE CHAIN REMARK 500 4 TYR A 7 0.07 SIDE CHAIN REMARK 500 5 TYR A 7 0.07 SIDE CHAIN REMARK 500 7 TYR A 7 0.07 SIDE CHAIN REMARK 500 8 TYR A 7 0.07 SIDE CHAIN REMARK 500 9 TYR A 84 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 GLY A 45 -11.12 REMARK 500 5 GLY A 45 -11.68 REMARK 500 6 GLU A 46 -10.61 REMARK 500 7 ARG A 24 -10.30 REMARK 500 7 GLY A 45 -10.52 REMARK 500 7 LYS A 101 12.29 REMARK 500 9 GLY A 45 -11.96 REMARK 500 9 GLU A 46 -10.35 REMARK 500 9 ALA A 104 -11.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 1H9C A 1 106 UNP P17409 PTCB_ECOLI 1 106 SEQADV 1H9C CSP A 10 UNP P17409 CYS 10 MODIFIED RESIDUE SEQRES 1 A 106 MET GLU LYS LYS HIS ILE TYR LEU PHE CSP SER ALA GLY SEQRES 2 A 106 MET SER THR SER LEU LEU VAL SER LYS MET ARG ALA GLN SEQRES 3 A 106 ALA GLU LYS TYR GLU VAL PRO VAL ILE ILE GLU ALA PHE SEQRES 4 A 106 PRO GLU THR LEU ALA GLY GLU LYS GLY GLN ASN ALA ASP SEQRES 5 A 106 VAL VAL LEU LEU GLY PRO GLN ILE ALA TYR MET LEU PRO SEQRES 6 A 106 GLU ILE GLN ARG LEU LEU PRO ASN LYS PRO VAL GLU VAL SEQRES 7 A 106 ILE ASP SER LEU LEU TYR GLY LYS VAL ASP GLY LEU GLY SEQRES 8 A 106 VAL LEU LYS ALA ALA VAL ALA ALA ILE LYS LYS ALA ALA SEQRES 9 A 106 ALA ASN MODRES 1H9C CSP A 10 CYS S-PHOSPHOCYSTEINE HET CSP A 10 15 HETNAM CSP S-PHOSPHOCYSTEINE FORMUL 1 CSP C3 H8 N O5 P S HELIX 1 1 THR A 16 TYR A 30 1 15 HELIX 2 2 LEU A 43 GLN A 49 1 7 HELIX 3 3 PRO A 58 TYR A 62 5 5 HELIX 4 4 MET A 63 LEU A 71 1 9 HELIX 5 5 ASP A 80 VAL A 87 1 8 HELIX 6 6 ASP A 88 ALA A 105 1 18 SHEET 1 AA 4 VAL A 34 PRO A 40 0 SHEET 2 AA 4 LYS A 4 CSP A 10 1 O LYS A 4 N ILE A 35 SHEET 3 AA 4 VAL A 53 LEU A 56 1 O VAL A 53 N TYR A 7 SHEET 4 AA 4 VAL A 76 VAL A 78 1 O GLU A 77 N LEU A 56 LINK C PHE A 9 N CSP A 10 1555 1555 1.33 LINK C CSP A 10 N SER A 11 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1