HEADER MEMBRANE PROTEIN 09-MAR-01 1H9F TITLE LEM DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE PROTEIN LAP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMINA-ASSOCIATED POLYPEPTIDE 2, ISOFORM ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEM DOMAIN (103-159); COMPND 5 SYNONYM: THYMOPOIETIN ISOFORM ALPHA,TP ALPHA,THYMOPOIETIN-RELATED COMPND 6 PEPTIDE ISOFORM ALPHA,TPRP ISOFORM ALPHA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS MEMBRANE PROTEIN, INNER NUCLEAR MEMBRANE PROTEIN, LAMINA-ASSOCIATED KEYWDS 2 POLYPEPTIDE, EMERIN, LEM DOMAIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.LAGURI,B.GILQUIN,N.WOLFF,R.ROMI-LEBRUN,K.COURCHAY,I.CALLEBAUT, AUTHOR 2 H.J.WORMAN,S.ZINN-JUSTIN REVDAT 4 13-JUN-18 1H9F 1 COMPND SOURCE DBREF REVDAT 3 14-JUN-17 1H9F 1 REMARK REVDAT 2 24-FEB-09 1H9F 1 VERSN REVDAT 1 17-JUN-01 1H9F 0 JRNL AUTH C.LAGURI,B.GILQUIN,N.WOLFF,R.ROMI-LEBRUN,K.COURCHAY, JRNL AUTH 2 I.CALLEBAUT,H.J.WORMAN,S.ZINN-JUSTIN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE LEM MOTIF COMMON TO THREE JRNL TITL 2 HUMAN INNER NUCLEAR MEMBRANE PROTEINS JRNL REF STRUCTURE V. 9 503 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11435115 JRNL DOI 10.1016/S0969-2126(01)00611-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H9F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1290005983. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY; TOCSY; NOESY; ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWER ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 101.56 50.22 REMARK 500 1 ASP A 4 139.46 60.11 REMARK 500 1 ASP A 9 89.78 -54.61 REMARK 500 1 LEU A 13 160.24 -34.48 REMARK 500 1 ILE A 32 53.69 -96.55 REMARK 500 1 VAL A 33 177.63 -48.67 REMARK 500 1 ARG A 48 13.42 -141.08 REMARK 500 1 THR A 52 -55.14 -171.39 REMARK 500 1 GLU A 53 -132.09 -116.14 REMARK 500 2 GLN A 2 -39.01 -133.07 REMARK 500 2 ASP A 4 -169.31 45.39 REMARK 500 2 LYS A 5 -59.14 -127.85 REMARK 500 2 ASP A 6 41.34 -83.03 REMARK 500 2 LEU A 8 -175.86 -50.12 REMARK 500 2 LEU A 13 154.49 -33.83 REMARK 500 2 LEU A 22 -63.53 -92.83 REMARK 500 2 VAL A 23 -18.68 -44.33 REMARK 500 2 VAL A 33 175.82 -49.57 REMARK 500 2 SER A 54 52.42 76.54 REMARK 500 2 ARG A 55 76.90 -103.36 REMARK 500 3 ASP A 4 -39.77 -36.89 REMARK 500 3 LYS A 5 -66.94 81.17 REMARK 500 3 ASP A 6 39.14 -81.04 REMARK 500 3 THR A 11 -59.24 -128.99 REMARK 500 3 LEU A 13 164.59 -42.05 REMARK 500 3 LEU A 22 -60.96 -91.06 REMARK 500 3 VAL A 23 -13.33 -49.00 REMARK 500 3 PRO A 31 44.95 -80.11 REMARK 500 3 LYS A 38 -30.71 -36.40 REMARK 500 3 GLN A 50 129.24 -14.48 REMARK 500 3 THR A 52 -78.79 -117.12 REMARK 500 3 SER A 54 -43.07 83.33 REMARK 500 3 ARG A 55 -151.79 33.11 REMARK 500 3 SER A 56 27.46 43.73 REMARK 500 4 GLU A 3 112.68 58.80 REMARK 500 4 ASP A 6 42.82 -84.93 REMARK 500 4 VAL A 10 -12.09 66.57 REMARK 500 4 LEU A 13 125.65 -27.81 REMARK 500 4 VAL A 33 175.98 -47.12 REMARK 500 4 GLN A 50 -154.40 41.73 REMARK 500 4 SER A 54 -141.17 47.46 REMARK 500 4 ARG A 55 74.99 60.46 REMARK 500 5 GLN A 2 -169.68 43.44 REMARK 500 5 GLU A 3 -90.67 -151.92 REMARK 500 5 ASP A 4 -33.72 -177.21 REMARK 500 5 LYS A 5 -65.89 81.84 REMARK 500 5 VAL A 10 17.21 42.01 REMARK 500 5 THR A 11 -56.33 -136.37 REMARK 500 5 LEU A 13 161.15 -37.42 REMARK 500 5 ILE A 32 64.15 -102.68 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.16 SIDE CHAIN REMARK 500 1 ARG A 37 0.17 SIDE CHAIN REMARK 500 1 ARG A 48 0.31 SIDE CHAIN REMARK 500 1 ARG A 55 0.11 SIDE CHAIN REMARK 500 2 ARG A 1 0.24 SIDE CHAIN REMARK 500 2 ARG A 37 0.17 SIDE CHAIN REMARK 500 2 ARG A 55 0.21 SIDE CHAIN REMARK 500 3 ARG A 1 0.18 SIDE CHAIN REMARK 500 3 ARG A 37 0.31 SIDE CHAIN REMARK 500 3 ARG A 55 0.27 SIDE CHAIN REMARK 500 4 ARG A 1 0.24 SIDE CHAIN REMARK 500 4 ARG A 37 0.18 SIDE CHAIN REMARK 500 4 ARG A 48 0.15 SIDE CHAIN REMARK 500 4 ARG A 55 0.24 SIDE CHAIN REMARK 500 5 ARG A 1 0.20 SIDE CHAIN REMARK 500 5 ARG A 37 0.16 SIDE CHAIN REMARK 500 5 ARG A 48 0.11 SIDE CHAIN REMARK 500 5 ARG A 55 0.15 SIDE CHAIN REMARK 500 6 ARG A 1 0.32 SIDE CHAIN REMARK 500 6 ARG A 37 0.18 SIDE CHAIN REMARK 500 6 ARG A 48 0.31 SIDE CHAIN REMARK 500 6 ARG A 55 0.10 SIDE CHAIN REMARK 500 7 ARG A 1 0.28 SIDE CHAIN REMARK 500 7 ARG A 37 0.17 SIDE CHAIN REMARK 500 7 ARG A 48 0.11 SIDE CHAIN REMARK 500 7 ARG A 55 0.14 SIDE CHAIN REMARK 500 8 ARG A 1 0.21 SIDE CHAIN REMARK 500 8 ARG A 37 0.16 SIDE CHAIN REMARK 500 8 ARG A 48 0.29 SIDE CHAIN REMARK 500 8 ARG A 55 0.32 SIDE CHAIN REMARK 500 9 ARG A 1 0.30 SIDE CHAIN REMARK 500 9 ARG A 37 0.17 SIDE CHAIN REMARK 500 9 ARG A 48 0.28 SIDE CHAIN REMARK 500 9 ARG A 55 0.31 SIDE CHAIN REMARK 500 10 ARG A 1 0.15 SIDE CHAIN REMARK 500 10 ARG A 37 0.17 SIDE CHAIN REMARK 500 10 ARG A 48 0.08 SIDE CHAIN REMARK 500 10 ARG A 55 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: RAMACHANDRAN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H9E RELATED DB: PDB REMARK 900 LEM-LIKE DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE PROTEIN LAP2 REMARK 900 RELATED ID: 5043 RELATED DB: BMRB DBREF 1H9F A 1 57 UNP P42166 LAP2A_HUMAN 103 159 SEQRES 1 A 57 ARG GLN GLU ASP LYS ASP ASP LEU ASP VAL THR GLU LEU SEQRES 2 A 57 THR ASN GLU ASP LEU LEU ASP GLN LEU VAL LYS TYR GLY SEQRES 3 A 57 VAL ASN PRO GLY PRO ILE VAL GLY THR THR ARG LYS LEU SEQRES 4 A 57 TYR GLU LYS LYS LEU LEU LYS LEU ARG GLU GLN GLY THR SEQRES 5 A 57 GLU SER ARG SER SER HELIX 1 H1 ASP A 9 GLU A 12 1 4 HELIX 2 H2 ASN A 15 TYR A 25 1 11 HELIX 3 H3 GLY A 34 LEU A 47 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1