HEADER IMMUNE SYSTEM, MEMBRANE PROTEIN 21-MAR-01 1H9V TITLE HUMAN FC-GAMMA-RECEPTOR IIA (FCGRIIA), MONOCLINIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW AFFINITY IMMUNOGLOBULIN GAMMA FC RECEPTOR II-A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IMMUNOGLOBULIN G BINDING DOMAIN RESIDUE 5-177; COMPND 5 SYNONYM: FC-GAMMA RII-A, FCRII-A, IGG FC RECEPTOR II-A, FC-GAMMA- COMPND 6 RIIA, CD32, CDW32; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: HIGH RESPONDER; SOURCE 6 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: INCLUSION BODIES; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 13 OTHER_DETAILS: REFOLDED FROM INCLUSION BODIES KEYWDS IMMUNE SYSTEM, MEMBRANE PROTEIN, FCR, FC-RECEPTOR, IMMUNOGLOBULIN, KEYWDS 2 FCGR, FC-GAMMA-R EXPDTA X-RAY DIFFRACTION AUTHOR P.SONDERMANN,J.KAISER,U.JACOB REVDAT 3 13-DEC-23 1H9V 1 REMARK REVDAT 2 24-FEB-09 1H9V 1 VERSN REVDAT 1 21-JUN-01 1H9V 0 JRNL AUTH P.SONDERMANN,J.KAISER,U.JACOB JRNL TITL MOLECULAR BASIS FOR IMMUNE COMPLEX RECOGNITION: A COMPARISON JRNL TITL 2 OF FC-RECEPTOR STRUCTURES JRNL REF J.MOL.BIOL. V. 309 737 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11397093 JRNL DOI 10.1006/JMBI.2001.4670 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ONE REFINEMENT CYCLE WAS CARRIED OUT ON REMARK 3 THE MODEL REMARK 4 REMARK 4 1H9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1290006021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3417 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2FCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NAOAC PH 4.6, 26% PEG 8000, PH REMARK 280 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.65500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 BINDS TO THE FC REGION OF IMMUNOGLOBULINS GAMMA. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 -73.43 -71.75 REMARK 500 GLU A 33 134.98 94.40 REMARK 500 ASP A 35 66.84 81.28 REMARK 500 SER A 36 23.94 -161.55 REMARK 500 THR A 48 -31.03 -38.21 REMARK 500 THR A 70 -159.60 -88.70 REMARK 500 SER A 85 31.68 -94.91 REMARK 500 PHE A 136 101.44 -161.80 REMARK 500 SER A 146 -174.45 -64.71 REMARK 500 VAL A 171 129.11 -29.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FCG RELATED DB: PDB REMARK 900 ECTODOMAIN OF HUMAN FC GAMMA RECEPTOR, FCGRIIA DBREF 1H9V A 1 172 UNP P12318 FCGA_HUMAN 37 208 SEQRES 1 A 172 ALA PRO PRO LYS ALA VAL LEU LYS LEU GLU PRO PRO TRP SEQRES 2 A 172 ILE ASN VAL LEU GLN GLU ASP SER VAL THR LEU THR CYS SEQRES 3 A 172 GLN GLY ALA ARG SER PRO GLU SER ASP SER ILE GLN TRP SEQRES 4 A 172 PHE HIS ASN GLY ASN LEU ILE PRO THR HIS THR GLN PRO SEQRES 5 A 172 SER TYR ARG PHE LYS ALA ASN ASN ASN ASP SER GLY GLU SEQRES 6 A 172 TYR THR CYS GLN THR GLY GLN THR SER LEU SER ASP PRO SEQRES 7 A 172 VAL HIS LEU THR VAL LEU SER GLU TRP LEU VAL LEU GLN SEQRES 8 A 172 THR PRO HIS LEU GLU PHE GLN GLU GLY GLU THR ILE MET SEQRES 9 A 172 LEU ARG CYS HIS SER TRP LYS ASP LYS PRO LEU VAL LYS SEQRES 10 A 172 VAL THR PHE PHE GLN ASN GLY LYS SER GLN LYS PHE SER SEQRES 11 A 172 ARG LEU ASP PRO THR PHE SER ILE PRO GLN ALA ASN HIS SEQRES 12 A 172 SER HIS SER GLY ASP TYR HIS CYS THR GLY ASN ILE GLY SEQRES 13 A 172 TYR THR LEU PHE SER SER LYS PRO VAL THR ILE THR VAL SEQRES 14 A 172 GLN VAL PRO HELIX 1 1 ASN A 59 SER A 63 5 5 HELIX 2 2 LYS A 111 LYS A 113 5 3 HELIX 3 3 ASN A 142 SER A 146 5 5 SHEET 1 AA 3 VAL A 6 GLU A 10 0 SHEET 2 AA 3 THR A 23 GLN A 27 -1 O THR A 23 N GLU A 10 SHEET 3 AA 3 SER A 53 TYR A 54 -1 O TYR A 54 N LEU A 24 SHEET 1 AB 5 ASN A 15 LEU A 17 0 SHEET 2 AB 5 VAL A 79 LEU A 84 1 O THR A 82 N VAL A 16 SHEET 3 AB 5 GLY A 64 GLN A 69 -1 O GLY A 64 N LEU A 81 SHEET 4 AB 5 GLN A 38 HIS A 41 -1 O GLN A 38 N GLN A 69 SHEET 5 AB 5 ASN A 44 LEU A 45 -1 O ASN A 44 N HIS A 41 SHEET 1 AC 3 LEU A 88 GLN A 91 0 SHEET 2 AC 3 ILE A 103 SER A 109 -1 O ARG A 106 N GLN A 91 SHEET 3 AC 3 THR A 135 ILE A 138 -1 O PHE A 136 N LEU A 105 SHEET 1 AD 5 GLU A 96 GLN A 98 0 SHEET 2 AD 5 VAL A 165 GLN A 170 1 O THR A 168 N PHE A 97 SHEET 3 AD 5 GLY A 147 ILE A 155 -1 O GLY A 147 N ILE A 167 SHEET 4 AD 5 LEU A 115 GLN A 122 -1 O VAL A 116 N ASN A 154 SHEET 5 AD 5 LYS A 128 SER A 130 -1 O LYS A 128 N PHE A 120 SHEET 1 AE 4 GLU A 96 GLN A 98 0 SHEET 2 AE 4 VAL A 165 GLN A 170 1 O THR A 168 N PHE A 97 SHEET 3 AE 4 GLY A 147 ILE A 155 -1 O GLY A 147 N ILE A 167 SHEET 4 AE 4 LEU A 159 SER A 161 -1 O PHE A 160 N GLY A 153 SSBOND 1 CYS A 26 CYS A 68 1555 1555 2.04 SSBOND 2 CYS A 107 CYS A 151 1555 1555 2.04 CISPEP 1 GLU A 10 PRO A 11 0 0.04 CRYST1 81.310 50.000 55.450 90.00 128.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012299 0.000000 0.009713 0.00000 SCALE2 0.000000 0.020000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022980 0.00000