HEADER NUCLEAR PROTEIN 30-OCT-96 1HA1 TITLE HNRNP A1 (RBD1,2) FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNRNP A1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HNRNP A1 (RBD1, RBD2); COMPND 5 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1, HNRNP A1 1-184; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: NUCLEUS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PA1_1-184 KEYWDS NUCLEAR PROTEIN, HNRNP, RBD, RRM, RNP, RNA BINDING, RIBONUCLEOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHAMOO,U.KRUEGER,L.RICE,K.R.WILLIAMS,T.A.STEITZ REVDAT 3 07-FEB-24 1HA1 1 REMARK REVDAT 2 24-FEB-09 1HA1 1 VERSN REVDAT 1 15-MAY-97 1HA1 0 JRNL AUTH Y.SHAMOO,U.KRUEGER,L.M.RICE,K.R.WILLIAMS,T.A.STEITZ JRNL TITL CRYSTAL STRUCTURE OF THE TWO RNA BINDING DOMAINS OF HUMAN JRNL TITL 2 HNRNP A1 AT 1.75 A RESOLUTION. JRNL REF NAT.STRUCT.BIOL. V. 4 215 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9164463 JRNL DOI 10.1038/NSB0397-215 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.S.GARRETT,P.J.LODI,Y.SHAMOO,K.R.WILLIAMS,G.M.CLORE, REMARK 1 AUTH 2 A.M.GRONENBORN REMARK 1 TITL DETERMINATION OF THE SECONDARY STRUCTURE AND FOLDING REMARK 1 TITL 2 TOPOLOGY OF AN RNA BINDING DOMAIN OF MAMMALIAN HNRNP A1 REMARK 1 TITL 3 PROTEIN USING THREE-DIMENSIONAL HETERONUCLEAR MAGNETIC REMARK 1 TITL 4 RESONANCE SPECTROSCOPY REMARK 1 REF BIOCHEMISTRY V. 33 2852 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.7 REMARK 3 NUMBER OF REFLECTIONS : 15067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1549 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.600 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.790 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.800 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.310 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.050 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.35 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENDING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : 0.22300 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.843 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 30% PEG REMARK 280 1500, 50 MM NACL, 20 MM TRIS 8.1, THEN MOVED TO 15% ETHYLENE REMARK 280 GLYCOL FOR FREEZING., PH 8.1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.75000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 93 REMARK 465 SER A 94 REMARK 465 GLN A 95 REMARK 465 ARG A 96 REMARK 465 PRO A 97 REMARK 465 GLY A 98 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 GLN A 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 90 OG REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 90 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 42 118.05 -165.82 REMARK 500 SER A 90 -72.44 -80.39 REMARK 500 HIS A 100 127.44 -179.98 REMARK 500 LYS A 112 -164.05 65.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 1HA1 A 1 183 UNP P09651 ROA1_HUMAN 1 183 SEQRES 1 A 184 MET SER LYS SER GLU SER PRO LYS GLU PRO GLU GLN LEU SEQRES 2 A 184 ARG LYS LEU PHE ILE GLY GLY LEU SER PHE GLU THR THR SEQRES 3 A 184 ASP GLU SER LEU ARG SER HIS PHE GLU GLN TRP GLY THR SEQRES 4 A 184 LEU THR ASP CYS VAL VAL MET ARG ASP PRO ASN THR LYS SEQRES 5 A 184 ARG SER ARG GLY PHE GLY PHE VAL THR TYR ALA THR VAL SEQRES 6 A 184 GLU GLU VAL ASP ALA ALA MET ASN ALA ARG PRO HIS LYS SEQRES 7 A 184 VAL ASP GLY ARG VAL VAL GLU PRO LYS ARG ALA VAL SER SEQRES 8 A 184 ARG GLU ASP SER GLN ARG PRO GLY ALA HIS LEU THR VAL SEQRES 9 A 184 LYS LYS ILE PHE VAL GLY GLY ILE LYS GLU ASP THR GLU SEQRES 10 A 184 GLU HIS HIS LEU ARG ASP TYR PHE GLU GLN TYR GLY LYS SEQRES 11 A 184 ILE GLU VAL ILE GLU ILE MET THR ASP ARG GLY SER GLY SEQRES 12 A 184 LYS LYS ARG GLY PHE ALA PHE VAL THR PHE ASP ASP HIS SEQRES 13 A 184 ASP SER VAL ASP LYS ILE VAL ILE GLN LYS TYR HIS THR SEQRES 14 A 184 VAL ASN GLY HIS ASN CYS GLU VAL ARG LYS ALA LEU SER SEQRES 15 A 184 LYS GLN FORMUL 2 HOH *170(H2 O) HELIX 1 1 GLU A 10 ARG A 13 5 4 HELIX 2 2 ASP A 26 TRP A 36 1 11 HELIX 3 3 VAL A 64 ASN A 72 1 9 HELIX 4 4 LYS A 112 ASP A 114 5 3 HELIX 5 5 GLU A 117 GLN A 126 1 10 HELIX 6 6 HIS A 155 VAL A 162 1 8 SHEET 1 A 4 GLU A 84 ARG A 87 0 SHEET 2 A 4 LYS A 14 GLY A 18 -1 N GLY A 18 O GLU A 84 SHEET 3 A 4 GLY A 57 TYR A 61 -1 N VAL A 59 O LEU A 15 SHEET 4 A 4 LEU A 39 VAL A 44 -1 N VAL A 43 O PHE A 58 SHEET 1 B 4 GLU A 175 LYS A 178 0 SHEET 2 B 4 LYS A 105 LYS A 112 -1 N GLY A 109 O GLU A 175 SHEET 3 B 4 GLY A 146 PHE A 152 -1 N VAL A 150 O ILE A 106 SHEET 4 B 4 ILE A 130 ILE A 135 -1 N GLU A 134 O PHE A 149 CISPEP 1 ARG A 74 PRO A 75 0 -0.16 CRYST1 37.600 43.500 55.500 90.00 94.70 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026596 0.000000 0.002187 0.00000 SCALE2 0.000000 0.022989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018079 0.00000