HEADER TRANSLATION 26-MAR-01 1HA3 TITLE ELONGATION FACTOR TU IN COMPLEX WITH AURODOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EF-TU; COMPND 5 EC: 3.1.5.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: TERNARY COMPLEX WITH GUANOSINE DIPHOSPHATE AND AURODOX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 ATCC: 27634; SOURCE 6 GENE: TUFB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: 47092; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEFTU10 KEYWDS TRANSLATION, GTPASE, AURODOX, N-METHYL-KIRROMYCIN, ANTIBIOTIC, KEYWDS 2 RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR L.VOGELEY,G.J.PALM,J.R.MESTERS,R.HILGENFELD REVDAT 6 13-DEC-23 1HA3 1 REMARK LINK REVDAT 5 23-OCT-19 1HA3 1 SEQADV REVDAT 4 24-JUL-19 1HA3 1 REMARK REVDAT 3 08-MAY-19 1HA3 1 REMARK LINK REVDAT 2 24-FEB-09 1HA3 1 VERSN REVDAT 1 15-MAY-01 1HA3 0 JRNL AUTH L.VOGELEY,G.J.PALM,J.R.MESTERS,R.HILGENFELD JRNL TITL CONFORMATIONAL CHANGE OF ELONGATION FACTOR TU INDUCED BY JRNL TITL 2 ANTIBIOTIC BINDING: CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN JRNL TITL 3 EF-TU:GDP AND AURODOX JRNL REF J.BIOL.CHEM. V. 276 17149 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11278992 JRNL DOI 10.1074/JBC.M100017200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.HILGENFELD,J.MESTERS,T.HOGG REMARK 1 TITL INSIGHTS INTO THE GTPASE MECHANISM OF EF-TU FROM STRUCTURAL REMARK 1 TITL 2 STUDIES REMARK 1 EDIT R.A.GARRETT, S.R.DOUTHWAITE, A.LILJAS, A.T.MATHESON, REMARK 1 EDIT 2 P.B.MOORE, H.F.NOLLER REMARK 1 REF THE RIBOSOME: STRUCTURE, 347 2000 REMARK 1 REF 2 FUNCTION, ANTIBIOTICS, AND REMARK 1 REF 3 CELLULAR INTERACTIONS REMARK 1 PUBL WASHINGTON,D.C., USA : ASM PRESS REMARK 1 REFERENCE 2 REMARK 1 AUTH R.HILGENFELD REMARK 1 TITL REGULATORY GTPASES REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 5 810 1995 REMARK 1 REFN ISSN 0959-440X REMARK 1 PMID 8749370 REMARK 1 DOI 10.1016/0959-440X(95)80015-8 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.BERCHTOLD,L.RESHETNIKOVA,C.O.A.REISER,N.K.SCHIRMER, REMARK 1 AUTH 2 M.SPRINZL,R.HILGENFELD REMARK 1 TITL CRYSTAL STRUCTURE OF ACTIVE ELONGATION FACTOR TU REVEALS REMARK 1 TITL 2 MAJOR DOMAIN REARRANGEMENTS REMARK 1 REF NATURE V. 365 126 1993 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 8371755 REMARK 1 DOI 10.1038/365126A0 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.RESHETNIKOVA,N.K.SCHIRMER,C.O.A.REISER,H.BERCHTOLD, REMARK 1 AUTH 2 R.STORM,R.HILGENFELD,M.SPRINZL REMARK 1 TITL CRYSTALS OF INTACT ELONGATION FACTOR TU FROM THERMUS REMARK 1 TITL 2 THERMOPHILUS DIFFRACTING TO 1.45 ANGSTROM RESOLUTION REMARK 1 REF J.CRYST.GROWTH V. 122 360 1992 REMARK 1 REFN ISSN 0022-0248 REMARK 1 DOI 10.1016/0022-0248(92)90270-S REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 66574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3358 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5701 REMARK 3 BIN R VALUE (WORKING SET) : 0.2428 REMARK 3 BIN FREE R VALUE : 0.2892 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 331 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.470 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.980 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.090 ; 5.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 51.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGANDS.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGANDS.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1290005857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 105.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : X-RAY RESEARCH, HAMBURG, GERMANY REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1EXM REMARK 200 REMARK 200 REMARK: DOMAIN 1 AND 2/3 HAD TO BE USED AS SEPARATE SEARCH MODELS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD (PROTEIN REMARK 280 SOLUTION:WELL 1:1). PROTEIN CONCENTRATION 10 MG/ML. WELL: 50 MM REMARK 280 TRIS, 200 MM NAOAC, 23-25% PEG4000, PH 8.0 MOLAR RATIO EF-TU:GDP: REMARK 280 AURODOX = 1:1:5, PH 8.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 53 REMARK 465 PRO A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 ARG A 59 REMARK 465 GLY A 60 REMARK 465 ILE A 61 REMARK 465 THR A 62 REMARK 465 ILE A 63 REMARK 465 ASN A 64 REMARK 465 ALA B 1 REMARK 465 LYS B 2 REMARK 465 VAL B 42 REMARK 465 GLU B 43 REMARK 465 VAL B 44 REMARK 465 LYS B 45 REMARK 465 ASP B 46 REMARK 465 TYR B 47 REMARK 465 GLY B 48 REMARK 465 ASP B 49 REMARK 465 ILE B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 ALA B 53 REMARK 465 PRO B 54 REMARK 465 GLU B 55 REMARK 465 GLU B 56 REMARK 465 ARG B 57 REMARK 465 ALA B 58 REMARK 465 ARG B 59 REMARK 465 GLY B 60 REMARK 465 ILE B 61 REMARK 465 THR B 62 REMARK 465 ILE B 63 REMARK 465 ASN B 64 REMARK 465 THR B 65 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 143 108.29 -47.02 REMARK 500 THR A 232 112.02 -27.65 REMARK 500 ARG A 234 -27.24 -145.75 REMARK 500 LEU A 258 -53.75 63.27 REMARK 500 ARG A 295 3.13 -69.65 REMARK 500 ARG A 345 -112.76 46.79 REMARK 500 ASP B 21 -0.11 73.69 REMARK 500 LEU B 258 -40.59 60.35 REMARK 500 ARG B 345 -112.14 47.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2048 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 GDP A 406 O2B 92.7 REMARK 620 3 HOH A2018 O 87.9 173.9 REMARK 620 4 HOH A2043 O 83.0 97.7 88.4 REMARK 620 5 HOH A2258 O 175.4 91.2 88.4 94.1 REMARK 620 6 HOH A2260 O 89.0 83.5 90.4 172.0 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 OG1 REMARK 620 2 GDP B 406 O3B 92.6 REMARK 620 3 HOH B2019 O 86.3 176.7 REMARK 620 4 HOH B2051 O 84.0 96.6 86.3 REMARK 620 5 HOH B2311 O 169.6 97.4 83.9 91.7 REMARK 620 6 HOH B2319 O 85.3 88.7 88.1 168.2 98.0 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "D" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAU A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAU B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 482 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AIP RELATED DB: PDB REMARK 900 EF-TU EF-TS COMPLEX FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 1EXM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS ELONGATION FACTOR TU (EF- REMARK 900 TU) IN COMPLEX WITH THE GTP ANALOGUE GPPNHP. DBREF 1HA3 A 1 405 UNP P07157 EFTU_THETH 1 405 DBREF 1HA3 B 1 405 UNP P07157 EFTU_THETH 1 405 SEQADV 1HA3 ILE A 6 UNP P07157 VAL 6 VARIANT SEQADV 1HA3 PHE A 33 UNP P07157 TYR 33 VARIANT SEQADV 1HA3 THR A 35 UNP P07157 ALA 35 VARIANT SEQADV 1HA3 LYS A 264 UNP P07157 ARG 264 VARIANT SEQADV 1HA3 ILE B 6 UNP P07157 VAL 6 VARIANT SEQADV 1HA3 PHE B 33 UNP P07157 TYR 33 VARIANT SEQADV 1HA3 THR B 35 UNP P07157 ALA 35 VARIANT SEQADV 1HA3 LYS B 264 UNP P07157 ARG 264 VARIANT SEQRES 1 A 405 ALA LYS GLY GLU PHE ILE ARG THR LYS PRO HIS VAL ASN SEQRES 2 A 405 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 405 LEU THR ALA ALA LEU THR PHE VAL THR ALA ALA GLU ASN SEQRES 4 A 405 PRO ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS SEQRES 5 A 405 ALA PRO GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 A 405 ALA HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER SEQRES 7 A 405 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR ILE LYS ASN SEQRES 8 A 405 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 A 405 VAL VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 A 405 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR SEQRES 11 A 405 ILE VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 A 405 PRO GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP SEQRES 13 A 405 LEU LEU ASN GLN TYR GLU PHE PRO GLY ASP GLU VAL PRO SEQRES 14 A 405 VAL ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLN MET SEQRES 15 A 405 HIS ARG ASN PRO LYS THR ARG ARG GLY GLU ASN GLU TRP SEQRES 16 A 405 VAL ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU SEQRES 17 A 405 TYR ILE PRO THR PRO VAL ARG ASP VAL ASP LYS PRO PHE SEQRES 18 A 405 LEU MET PRO VAL GLU ASP VAL PHE THR ILE THR GLY ARG SEQRES 19 A 405 GLY THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL SEQRES 20 A 405 LYS VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA PRO SEQRES 21 A 405 GLU THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS SEQRES 22 A 405 ARG LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL SEQRES 23 A 405 GLY VAL LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU SEQRES 24 A 405 ARG GLY GLN VAL LEU ALA LYS PRO GLY SER ILE THR PRO SEQRES 25 A 405 HIS THR LYS PHE GLU ALA SER VAL TYR VAL LEU LYS LYS SEQRES 26 A 405 GLU GLU GLY GLY ARG HIS THR GLY PHE PHE SER GLY TYR SEQRES 27 A 405 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 28 A 405 VAL VAL GLN LEU PRO PRO GLY VAL GLU MET VAL MET PRO SEQRES 29 A 405 GLY ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS PRO SEQRES 30 A 405 VAL ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 31 A 405 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE SEQRES 32 A 405 LEU GLU SEQRES 1 B 405 ALA LYS GLY GLU PHE ILE ARG THR LYS PRO HIS VAL ASN SEQRES 2 B 405 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 B 405 LEU THR ALA ALA LEU THR PHE VAL THR ALA ALA GLU ASN SEQRES 4 B 405 PRO ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS SEQRES 5 B 405 ALA PRO GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 B 405 ALA HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER SEQRES 7 B 405 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR ILE LYS ASN SEQRES 8 B 405 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 B 405 VAL VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 B 405 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR SEQRES 11 B 405 ILE VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 B 405 PRO GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP SEQRES 13 B 405 LEU LEU ASN GLN TYR GLU PHE PRO GLY ASP GLU VAL PRO SEQRES 14 B 405 VAL ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLN MET SEQRES 15 B 405 HIS ARG ASN PRO LYS THR ARG ARG GLY GLU ASN GLU TRP SEQRES 16 B 405 VAL ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU SEQRES 17 B 405 TYR ILE PRO THR PRO VAL ARG ASP VAL ASP LYS PRO PHE SEQRES 18 B 405 LEU MET PRO VAL GLU ASP VAL PHE THR ILE THR GLY ARG SEQRES 19 B 405 GLY THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL SEQRES 20 B 405 LYS VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA PRO SEQRES 21 B 405 GLU THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS SEQRES 22 B 405 ARG LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL SEQRES 23 B 405 GLY VAL LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU SEQRES 24 B 405 ARG GLY GLN VAL LEU ALA LYS PRO GLY SER ILE THR PRO SEQRES 25 B 405 HIS THR LYS PHE GLU ALA SER VAL TYR VAL LEU LYS LYS SEQRES 26 B 405 GLU GLU GLY GLY ARG HIS THR GLY PHE PHE SER GLY TYR SEQRES 27 B 405 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 28 B 405 VAL VAL GLN LEU PRO PRO GLY VAL GLU MET VAL MET PRO SEQRES 29 B 405 GLY ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS PRO SEQRES 30 B 405 VAL ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 31 B 405 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE SEQRES 32 B 405 LEU GLU HET GDP A 406 28 HET MG A 407 1 HET MAU A 408 58 HET BME A 482 4 HET GDP B 406 28 HET MG B 407 1 HET MAU B 408 58 HET BME B 482 4 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MAU N-METHYL KIRROMYCIN HETNAM BME BETA-MERCAPTOETHANOL HETSYN MAU AURODOX; 1-METHYLMOCIMYCIN; ANTIBIOTIC X-5108; HETSYN 2 MAU GOLDINODOX; GOLDINOMYCIN FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 MAU 2(C44 H62 N2 O12) FORMUL 6 BME 2(C2 H6 O S) FORMUL 11 HOH *598(H2 O) HELIX 1 1 GLY A 23 ALA A 37 1 15 HELIX 2 2 ASP A 46 ASP A 51 1 6 HELIX 3 3 HIS A 85 ASP A 87 5 3 HELIX 4 4 TYR A 88 GLN A 98 1 11 HELIX 5 5 MET A 113 VAL A 126 1 14 HELIX 6 6 LYS A 137 VAL A 141 5 5 HELIX 7 7 ASP A 143 TYR A 161 1 19 HELIX 8 8 SER A 174 ASN A 185 1 12 HELIX 9 9 ASN A 193 ILE A 210 1 18 HELIX 10 10 LYS A 324 GLY A 328 5 5 HELIX 11 11 GLY B 23 ALA B 37 1 15 HELIX 12 12 HIS B 85 ASP B 87 5 3 HELIX 13 13 TYR B 88 GLN B 98 1 11 HELIX 14 14 MET B 113 VAL B 126 1 14 HELIX 15 15 LYS B 137 VAL B 141 5 5 HELIX 16 16 ASP B 143 TYR B 161 1 19 HELIX 17 17 SER B 174 ASN B 185 1 12 HELIX 18 18 ASN B 193 ILE B 210 1 18 HELIX 19 19 LYS B 324 GLY B 328 5 5 SHEET 1 AA 6 GLU A 4 PHE A 5 0 SHEET 2 AA 6 LYS A 275 LEU A 277 1 O THR A 276 N PHE A 5 SHEET 3 AA 6 ARG A 263 MET A 272 -1 O VAL A 270 N LEU A 277 SHEET 4 AA 6 GLU A 252 VAL A 256 -1 O VAL A 253 N THR A 265 SHEET 5 AA 6 VAL A 303 ALA A 305 -1 O VAL A 303 N VAL A 256 SHEET 6 AA 6 LEU A 222 PRO A 224 -1 O MET A 223 N LEU A 304 SHEET 1 AB 6 GLU A 4 PHE A 5 0 SHEET 2 AB 6 LYS A 275 LEU A 277 1 O THR A 276 N PHE A 5 SHEET 3 AB 6 ARG A 263 MET A 272 -1 O VAL A 270 N LEU A 277 SHEET 4 AB 6 ASN A 285 LEU A 290 -1 O GLY A 287 N GLU A 271 SHEET 5 AB 6 GLY A 235 ARG A 241 -1 O THR A 236 N LEU A 290 SHEET 6 AB 6 ASP A 227 ILE A 231 -1 O ASP A 227 N THR A 239 SHEET 1 AC 6 HIS A 67 GLU A 71 0 SHEET 2 AC 6 HIS A 76 ASP A 81 -1 O TYR A 77 N TYR A 70 SHEET 3 AC 6 HIS A 11 ILE A 17 1 O VAL A 12 N SER A 78 SHEET 4 AC 6 ALA A 102 SER A 107 1 O ILE A 103 N ILE A 17 SHEET 5 AC 6 ILE A 131 ASN A 136 1 O VAL A 132 N LEU A 104 SHEET 6 AC 6 VAL A 170 ARG A 172 1 O ILE A 171 N MET A 135 SHEET 1 AD 2 LYS A 246 VAL A 247 0 SHEET 2 AD 2 GLY A 280 ILE A 281 -1 O GLY A 280 N VAL A 247 SHEET 1 AE 7 THR A 311 VAL A 322 0 SHEET 2 AE 7 ASN A 367 LEU A 380 -1 O VAL A 368 N VAL A 320 SHEET 3 AE 7 THR A 347 GLN A 354 -1 O THR A 350 N ILE A 375 SHEET 4 AE 7 GLN A 341 PHE A 344 -1 O PHE A 342 N VAL A 349 SHEET 5 AE 7 ARG A 385 GLU A 390 -1 O ALA A 387 N TYR A 343 SHEET 6 AE 7 ARG A 393 ILE A 403 -1 O ARG A 393 N GLU A 390 SHEET 7 AE 7 THR A 311 VAL A 322 -1 O GLU A 317 N THR A 401 SHEET 1 BA 6 GLU B 4 PHE B 5 0 SHEET 2 BA 6 LYS B 275 LEU B 277 1 O THR B 276 N PHE B 5 SHEET 3 BA 6 ARG B 263 MET B 272 -1 O VAL B 270 N LEU B 277 SHEET 4 BA 6 GLU B 252 VAL B 256 -1 O VAL B 253 N THR B 265 SHEET 5 BA 6 VAL B 303 ALA B 305 -1 O VAL B 303 N VAL B 256 SHEET 6 BA 6 LEU B 222 PRO B 224 -1 O MET B 223 N LEU B 304 SHEET 1 BB 6 GLU B 4 PHE B 5 0 SHEET 2 BB 6 LYS B 275 LEU B 277 1 O THR B 276 N PHE B 5 SHEET 3 BB 6 ARG B 263 MET B 272 -1 O VAL B 270 N LEU B 277 SHEET 4 BB 6 ASN B 285 LEU B 290 -1 O GLY B 287 N GLU B 271 SHEET 5 BB 6 GLY B 235 ARG B 241 -1 O THR B 236 N LEU B 290 SHEET 6 BB 6 ASP B 227 ILE B 231 -1 O ASP B 227 N THR B 239 SHEET 1 BC 6 HIS B 67 GLU B 71 0 SHEET 2 BC 6 HIS B 76 ASP B 81 -1 O TYR B 77 N TYR B 70 SHEET 3 BC 6 HIS B 11 ILE B 17 1 O VAL B 12 N SER B 78 SHEET 4 BC 6 ALA B 102 SER B 107 1 O ILE B 103 N ILE B 17 SHEET 5 BC 6 ILE B 131 ASN B 136 1 O VAL B 132 N LEU B 104 SHEET 6 BC 6 VAL B 170 ARG B 172 1 O ILE B 171 N MET B 135 SHEET 1 BD 2 LYS B 246 VAL B 247 0 SHEET 2 BD 2 GLY B 280 ILE B 281 -1 O GLY B 280 N VAL B 247 SHEET 1 BE 7 THR B 311 VAL B 322 0 SHEET 2 BE 7 ASN B 367 LEU B 380 -1 O VAL B 368 N VAL B 320 SHEET 3 BE 7 THR B 347 GLN B 354 -1 O THR B 350 N ILE B 375 SHEET 4 BE 7 GLN B 341 PHE B 344 -1 O PHE B 342 N VAL B 349 SHEET 5 BE 7 ARG B 385 GLU B 390 -1 O ALA B 387 N TYR B 343 SHEET 6 BE 7 ARG B 393 ILE B 403 -1 O ARG B 393 N GLU B 390 SHEET 7 BE 7 THR B 311 VAL B 322 -1 O GLU B 317 N THR B 401 LINK SG CYS A 82 S2 BME A 482 1555 1555 2.03 LINK SG CYS B 82 S2 BME B 482 1555 1555 2.03 LINK OG1 THR A 25 MG MG A 407 1555 1555 2.06 LINK O2B GDP A 406 MG MG A 407 1555 1555 2.08 LINK MG MG A 407 O HOH A2018 1555 1555 2.04 LINK MG MG A 407 O HOH A2043 1555 1555 2.10 LINK MG MG A 407 O HOH A2258 1555 1555 2.12 LINK MG MG A 407 O HOH A2260 1555 1555 2.20 LINK OG1 THR B 25 MG MG B 407 1555 1555 2.11 LINK O3B GDP B 406 MG MG B 407 1555 1555 2.04 LINK MG MG B 407 O HOH B2019 1555 1555 2.07 LINK MG MG B 407 O HOH B2051 1555 1555 2.22 LINK MG MG B 407 O HOH B2311 1555 1555 2.00 LINK MG MG B 407 O HOH B2319 1555 1555 2.14 SITE 1 AC1 6 THR A 25 GDP A 406 HOH A2018 HOH A2043 SITE 2 AC1 6 HOH A2258 HOH A2260 SITE 1 AC2 6 THR B 25 GDP B 406 HOH B2019 HOH B2051 SITE 2 AC2 6 HOH B2311 HOH B2319 SITE 1 AC3 22 ASP A 21 HIS A 22 GLY A 23 LYS A 24 SITE 2 AC3 22 THR A 25 THR A 26 TYR A 47 ASN A 136 SITE 3 AC3 22 LYS A 137 ASP A 139 MET A 140 SER A 174 SITE 4 AC3 22 ALA A 175 LEU A 176 MG A 407 HOH A2083 SITE 5 AC3 22 HOH A2258 HOH A2259 HOH A2260 HOH A2261 SITE 6 AC3 22 HOH A2262 HOH A2263 SITE 1 AC4 27 ILE A 93 ARG A 117 LEU A 121 ARG A 124 SITE 2 AC4 27 GLN A 125 VAL A 126 TYR A 161 GLU A 162 SITE 3 AC4 27 TYR A 321 GLU A 326 GLU A 327 ARG A 345 SITE 4 AC4 27 ARG A 385 PHE A 386 ALA A 387 ALA A 397 SITE 5 AC4 27 HOH A2077 HOH A2199 HOH A2252 HOH A2264 SITE 6 AC4 27 HOH A2265 HOH A2266 HOH A2267 HOH A2268 SITE 7 AC4 27 HOH A2269 ARG B 330 HIS B 331 SITE 1 AC5 6 VAL A 80 CYS A 82 PRO A 83 ASN A 91 SITE 2 AC5 6 MET A 92 HOH A2271 SITE 1 AC6 24 ASP B 21 HIS B 22 GLY B 23 LYS B 24 SITE 2 AC6 24 THR B 25 THR B 26 ASN B 136 LYS B 137 SITE 3 AC6 24 ASP B 139 MET B 140 SER B 174 ALA B 175 SITE 4 AC6 24 LEU B 176 MG B 407 HOH B2108 HOH B2311 SITE 5 AC6 24 HOH B2312 HOH B2313 HOH B2314 HOH B2315 SITE 6 AC6 24 HOH B2316 HOH B2317 HOH B2318 HOH B2319 SITE 1 AC7 28 ARG A 330 HIS A 331 HOH A2201 ILE B 93 SITE 2 AC7 28 GLU B 118 LEU B 121 ARG B 124 GLN B 125 SITE 3 AC7 28 TYR B 161 GLU B 162 TYR B 321 GLU B 326 SITE 4 AC7 28 GLU B 327 ARG B 345 ARG B 385 PHE B 386 SITE 5 AC7 28 ALA B 387 ALA B 397 HOH B2097 HOH B2298 SITE 6 AC7 28 HOH B2307 HOH B2320 HOH B2321 HOH B2322 SITE 7 AC7 28 HOH B2323 HOH B2324 HOH B2325 HOH B2326 SITE 1 AC8 7 VAL B 80 CYS B 82 PRO B 83 ASN B 91 SITE 2 AC8 7 MET B 92 HOH B2054 HOH B2327 CRYST1 69.000 101.400 79.100 90.00 113.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014493 0.000000 0.006332 0.00000 SCALE2 0.000000 0.009862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013796 0.00000 MTRIX1 1 0.981974 -0.188989 -0.003066 -0.85358 1 MTRIX2 1 0.188839 0.980238 0.058942 43.67351 1 MTRIX3 1 -0.008134 -0.058458 0.998257 -12.77729 1