HEADER HYDROLASE/HYDROLASE INHIBITOR 27-JUN-94 1HAG TITLE THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND PPACK- TITLE 2 THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE BINDING TO TITLE 3 THROMBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRETHROMBIN 2; COMPND 3 CHAIN: E; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HIRUGEN; COMPND 8 CHAIN: I; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 7 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 8 ORGANISM_TAXID: 6421 KEYWDS COMPLEX(SERINE PROTEINASE-INHIBITOR), HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,J.VIJAYALAKSHMI REVDAT 7 29-JUL-20 1HAG 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 14-AUG-19 1HAG 1 REMARK REVDAT 5 17-JUL-19 1HAG 1 REMARK LINK REVDAT 4 29-NOV-17 1HAG 1 HELIX REVDAT 3 13-JUL-11 1HAG 1 VERSN REVDAT 2 24-FEB-09 1HAG 1 VERSN REVDAT 1 20-DEC-94 1HAG 0 JRNL AUTH J.VIJAYALAKSHMI,K.P.PADMANABHAN,K.G.MANN,A.TULINSKY JRNL TITL THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-, AND JRNL TITL 2 PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE JRNL TITL 3 BINDING TO THROMBIN. JRNL REF PROTEIN SCI. V. 3 2254 1994 JRNL REFN ISSN 0961-8368 JRNL PMID 7756983 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER REMARK 1 TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 583 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN, REMARK 1 AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE REMARK 1 TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES OF REMARK 1 TITL 2 ALPHA-THROMBIN REMARK 1 REF J.MOL.BIOL. V. 221 1379 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.600 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.700 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 FLEXIBLE REGIONS WITH RELATIVELY HIGH TEMPERATURE FACTORS REMARK 3 ARE FOUND IN THE ACTIVATION DOMAIN, N-TERMINAL AND REMARK 3 C-TERMINAL REGIONS. THESE REGIONS INCLUDE: THR E 1H - REMARK 3 GLU E 1C, GLU E 14H - GLUE 18, GLU E 146 - GLN E 151 REMARK 3 (GAMMA AUTOLYSIS LOOP), PRO E 186 - ARG E 187, GLY E 219 - REMARK 3 GLY E 223, AND ASP E 243 - GLU E 247. REMARK 3 REMARK 3 A FEW ATOMS IN THE AUTOLYSIS LOOP (N THR E 147, REMARK 3 CA TRP E 148, CB TRP E 148, AND THE SIDE CHAIN OF THRE 149) REMARK 3 DO NOT HAVE WELL-DEFINED ELECTRON DENSITY. ATOMS WITH NO REMARK 3 ELECTRON DENSITIES ARE GIVEN OCCUPANCIES OF 0.01 IN THE REMARK 3 ENTRY. REMARK 4 REMARK 4 1HAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.42500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.42500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 454 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 456 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 483 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 PEPTIDE ASP I 55 - LEU 64 AT THE EXOSITE IS HIRUGEN REMARK 400 MOLECULE, WHICH IS PART OF HIRUDIN 53 - 65. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP E 221 O HOH E 460 1.86 REMARK 500 O LEU E 64 O HOH E 449 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY E 1D C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP E 1A CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 ASP E 1A CB - CG - OD1 ANGL. DEV. = -8.6 DEGREES REMARK 500 LEU E 3 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG E 4 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG E 4 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 GLU E 13 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 THR E 14B N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG E 14D NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG E 14D NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP E 14L CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 GLU E 18 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP E 21 CB - CG - OD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP E 21 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 GLU E 23 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU E 33 CA - CB - CG ANGL. DEV. = 27.5 DEGREES REMARK 500 CYS E 42 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 ALA E 44 CB - CA - C ANGL. DEV. = 9.8 DEGREES REMARK 500 SER E 48 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP E 49 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ALA E 55 CB - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 TYR E 60A CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR E 60A CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP E 60E CB - CG - OD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP E 60E O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 THR E 60I CA - CB - OG1 ANGL. DEV. = -13.6 DEGREES REMARK 500 THR E 60I CA - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG E 67 NH1 - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG E 67 NE - CZ - NH2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG E 73 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG E 75 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG E 75 NE - CZ - NH2 ANGL. DEV. = 10.9 DEGREES REMARK 500 TYR E 76 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 TYR E 76 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 GLU E 77 OE1 - CD - OE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG E 77A NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU E 80 CG - CD - OE2 ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG E 93 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR E 94 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR E 94 CG - CD1 - CE1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG E 97 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG E 97 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP E 100 CB - CG - OD1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP E 100 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG E 101 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP E 102 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ALA E 104 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU E 105 O - C - N ANGL. DEV. = 11.0 DEGREES REMARK 500 ALA E 113 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 ILE E 118 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 89 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE E 7 -62.05 -123.92 REMARK 500 GLU E 14H -169.48 -69.15 REMARK 500 ASP E 14L 109.30 -36.06 REMARK 500 ARG E 15 105.24 -34.80 REMARK 500 ILE E 16 76.28 -107.71 REMARK 500 GLU E 18 -162.77 -62.78 REMARK 500 SER E 20 170.19 -50.27 REMARK 500 CYS E 42 -179.30 -170.10 REMARK 500 TYR E 60A 81.75 -156.44 REMARK 500 ASN E 60G 78.41 -159.87 REMARK 500 ILE E 79 -63.76 -124.15 REMARK 500 GLU E 97A -70.74 -103.91 REMARK 500 PRO E 111 159.06 -49.25 REMARK 500 LEU E 130 87.30 -66.22 REMARK 500 TRP E 148 -63.04 -145.53 REMARK 500 ASN E 149B 40.17 -146.32 REMARK 500 VAL E 149C 91.41 -25.51 REMARK 500 GLN E 151 85.02 31.48 REMARK 500 PRO E 152 152.23 -46.83 REMARK 500 ASN E 179 29.01 -79.22 REMARK 500 ASP E 186A -168.58 -166.20 REMARK 500 GLU E 186B -72.85 -57.52 REMARK 500 SER E 214 -61.52 -97.16 REMARK 500 CYS E 220 71.45 -66.72 REMARK 500 ASP E 221 -64.07 -163.97 REMARK 500 ARG E 221A -34.01 -163.53 REMARK 500 ILE E 242 -71.26 -61.52 REMARK 500 ASP E 243 -17.59 -43.33 REMARK 500 PRO I 60 125.86 -38.64 REMARK 500 GLU I 61 -16.95 -48.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG E 14D 0.12 SIDE CHAIN REMARK 500 ARG E 15 0.09 SIDE CHAIN REMARK 500 ARG E 73 0.30 SIDE CHAIN REMARK 500 ARG E 126 0.09 SIDE CHAIN REMARK 500 ARG E 175 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *B1* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY A SIX-STRANDED BETA-BARREL. THIS IS REPRESENTED REMARK 700 BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST REMARK 700 STRANDS ARE IDENTICAL. THE SHEET PRESENTED AS *B2* ON REMARK 700 SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED REMARK 700 BETA-BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED REMARK 700 SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1HAG E 1 247 UNP P00734 THRB_HUMAN 328 622 DBREF 1HAG I 55 64 UNP P28505 ITHE_HIRME 55 64 SEQRES 1 E 295 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 E 295 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 E 295 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG ILE VAL GLU SEQRES 4 E 295 GLY SER ASP ALA GLU ILE GLY MET SER PRO TRP GLN VAL SEQRES 5 E 295 MET LEU PHE ARG LYS SER PRO GLN GLU LEU LEU CYS GLY SEQRES 6 E 295 ALA SER LEU ILE SER ASP ARG TRP VAL LEU THR ALA ALA SEQRES 7 E 295 HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS ASN PHE THR SEQRES 8 E 295 GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS HIS SER ARG SEQRES 9 E 295 THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SER MET LEU SEQRES 10 E 295 GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN TRP ARG GLU SEQRES 11 E 295 ASN LEU ASP ARG ASP ILE ALA LEU MET LYS LEU LYS LYS SEQRES 12 E 295 PRO VAL ALA PHE SER ASP TYR ILE HIS PRO VAL CYS LEU SEQRES 13 E 295 PRO ASP ARG GLU THR ALA ALA SER LEU LEU GLN ALA GLY SEQRES 14 E 295 TYR LYS GLY ARG VAL THR GLY TRP GLY ASN LEU LYS GLU SEQRES 15 E 295 THR TRP THR ALA ASN VAL GLY LYS GLY GLN PRO SER VAL SEQRES 16 E 295 LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU ARG PRO VAL SEQRES 17 E 295 CYS LYS ASP SER THR ARG ILE ARG ILE THR ASP ASN MET SEQRES 18 E 295 PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY LYS ARG GLY SEQRES 19 E 295 ASP ALA CYS GLU GLY ASP SER GLY GLY PRO PHE VAL MET SEQRES 20 E 295 LYS SER PRO PHE ASN ASN ARG TRP TYR GLN MET GLY ILE SEQRES 21 E 295 VAL SER TRP GLY GLU GLY CYS ASP ARG ASP GLY LYS TYR SEQRES 22 E 295 GLY PHE TYR THR HIS VAL PHE ARG LEU LYS LYS TRP ILE SEQRES 23 E 295 GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 10 ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU MODRES 1HAG ASN E 60G ASN GLYCOSYLATION SITE MODRES 1HAG TYS I 63 TYR O-SULFO-L-TYROSINE HET TYS I 63 16 HET NAG E 400 14 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 TYS C9 H11 N O6 S FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HOH *202(H2 O) HELIX 1 H1 THR E 14B GLU E 14H 1 7 HELIX 2 H2 ASP E 125 LEU E 130 1 9 HELIX 3 H3 GLU E 164 ASP E 170 1 7 HELIX 4 H4 HIS E 230 GLN E 244 1 15 SHEET 1 B1 7 TRP E 29 LYS E 36 0 SHEET 2 B1 7 LEU E 41 ILE E 47 -1 SHEET 3 B1 7 ARG E 50 ALA E 55 -1 SHEET 4 B1 7 ARG E 101 LYS E 109 -1 SHEET 5 B1 7 GLU E 80 PRO E 92 -1 SHEET 6 B1 7 ASP E 63 GLY E 69 -1 SHEET 7 B1 7 TRP E 29 LYS E 36 -1 SHEET 1 B2 8 GLY E 133 TRP E 141 0 SHEET 2 B2 8 LEU E 155 ILE E 162 -1 SHEET 3 B2 8 ASN E 179 LYS E 185 -1 SHEET 4 B2 8 TYR E 225 THR E 229 -1 SHEET 5 B2 8 ILE E 212 GLY E 219 -1 SHEET 6 B2 8 ARG E 206 GLN E 209 -1 SHEET 7 B2 8 GLY E 196 SER E 203 -1 SHEET 8 B2 8 GLY E 133 TRP E 141 -1 SSBOND 1 CYS E 1 CYS E 122 1555 1555 2.04 SSBOND 2 CYS E 42 CYS E 58 1555 1555 2.00 SSBOND 3 CYS E 168 CYS E 182 1555 1555 2.14 SSBOND 4 CYS E 191 CYS E 220 1555 1555 2.08 LINK ND2 ASN E 60G C1 NAG E 400 1555 1555 1.46 LINK C GLU I 62 N TYS I 63 1555 1555 1.33 LINK C TYS I 63 N LEU I 64 1555 1555 1.32 CISPEP 1 SER E 36A PRO E 37 0 -1.18 SITE 1 CAT 3 HIS E 57 ASP E 102 SER E 195 CRYST1 72.850 71.320 72.630 90.00 101.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013727 0.000000 0.002693 0.00000 SCALE2 0.000000 0.014021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014031 0.00000