data_1HAH # _entry.id 1HAH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HAH WWPDB D_1000173745 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HAH _pdbx_database_status.recvd_initial_deposition_date 1994-06-27 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tulinsky, A.' 1 'Vijayalakshmi, J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The isomorphous structures of prethrombin2, hirugen-, and PPACK-thrombin: changes accompanying activation and exosite binding to thrombin. ; 'Protein Sci.' 3 2254 2271 1994 PRCIEI US 0961-8368 0795 ? 7756983 ? 1 'Refined Structure of the Hirudin-Thrombin Complex' J.Mol.Biol. 221 583 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Structure of the Hirugen and Hirulog 1 Complexes of Alpha-Thrombin' J.Mol.Biol. 221 1379 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vijayalakshmi, J.' 1 ? primary 'Padmanabhan, K.P.' 2 ? primary 'Mann, K.G.' 3 ? primary 'Tulinsky, A.' 4 ? 1 'Rydel, T.J.' 5 ? 1 'Tulinsky, A.' 6 ? 1 'Bode, W.' 7 ? 1 'Huber, R.' 8 ? 2 'Skrzypczak-Jankun, E.' 9 ? 2 'Carperos, V.E.' 10 ? 2 'Ravichandran, K.G.' 11 ? 2 'Tulinsky, A.' 12 ? 2 'Westbrook, M.' 13 ? 2 'Maraganore, J.M.' 14 ? # _cell.entry_id 1HAH _cell.length_a 71.750 _cell.length_b 72.390 _cell.length_c 73.520 _cell.angle_alpha 90.00 _cell.angle_beta 101.26 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1HAH _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ALPHA-THROMBIN (SMALL SUBUNIT)' 4096.534 1 3.4.21.5 ? ? ? 2 polymer man 'ALPHA-THROMBIN (LARGE SUBUNIT)' 29780.219 1 3.4.21.5 ? ? ? 3 polymer man HIRUGEN 1363.399 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 204 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no yes 'DFEEIPEE(TYS)L' DFEEIPEEYL I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 ASP n 3 2 PHE n 3 3 GLU n 3 4 GLU n 3 5 ILE n 3 6 PRO n 3 7 GLU n 3 8 GLU n 3 9 TYS n 3 10 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'medicinal leech' Hirudo ? ? ? ? ? ? ? 'Hirudo medicinalis' 6421 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 328 ? ? 2 UNP THRB_HUMAN P00734 2 364 ? ? 3 PDB 1HAH 1HAH 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HAH L 9 ? 36 ? P00734 328 ? 363 ? 1 15 2 2 1HAH H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 1HAH I 1 ? 10 ? 1HAH 55 ? 64 ? 55 64 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HAH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1HAH _refine.ls_number_reflns_obs 15157 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.114 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.114 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2435 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 204 _refine_hist.number_atoms_total 2653 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.7 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.2 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 1.9 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.6 2.5 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.5 3.0 ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1HAH _struct.title ;THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE BINDING TO THROMBIN ; _struct.pdbx_descriptor 'ALPHA THROMBIN (E.C.3.4.21.5) COMPLEXED WITH HIRUGEN (N-ACETYLHIRUDIN 53 - 64 WITH SULFATO-TYR 63)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HAH _struct_keywords.pdbx_keywords 'COMPLEX(SERINE PROTEINASE/INHIBITOR)' _struct_keywords.text 'COMPLEX(SERINE PROTEINASE-INHIBITOR), COMPLEX(SERINE PROTEINASE-INHIBITOR) complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 THR A 24 B GLU A 30 H THR L 14 GLU L 14 1 ? 7 HELX_P HELX_P2 H2 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P3 H3 GLU B 169 ? ASP B 175 ? GLU H 164 ASP H 170 1 ? 7 HELX_P HELX_P4 H4 HIS B 242 ? GLN B 256 ? HIS H 230 GLN H 244 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.000 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.043 ? ? covale1 covale one ? B ASN 53 ND2 ? G ? 1_555 D NAG . C1 ? ? H ASN 60 H NAG 400 1_555 ? ? ? ? ? ? ? 1.466 ? N-Glycosylation covale2 covale both ? C GLU 8 C ? ? ? 1_555 C TYS 9 N ? ? I GLU 62 I TYS 63 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? C TYS 9 C ? ? ? 1_555 C LEU 10 N ? ? I TYS 63 I LEU 64 1_555 ? ? ? ? ? ? ? 1.320 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details B1 ? 7 ? B2 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel B1 5 6 ? anti-parallel B1 6 7 ? anti-parallel B2 1 2 ? anti-parallel B2 2 3 ? anti-parallel B2 3 4 ? anti-parallel B2 4 5 ? anti-parallel B2 5 6 ? anti-parallel B2 6 7 ? anti-parallel B2 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B1 1 TRP B 14 ? LYS B 21 ? TRP H 29 LYS H 36 B1 2 LEU B 27 ? ILE B 33 ? LEU H 41 ILE H 47 B1 3 ARG B 36 ? ALA B 41 ? ARG H 50 ALA H 55 B1 4 ARG B 98 ? LYS B 106 ? ARG H 101 LYS H 109 B1 5 GLU B 76 ? PRO B 88 ? GLU H 80 PRO H 92 B1 6 ASP B 58 ? GLY B 64 ? ASP H 63 GLY H 69 B1 7 TRP B 14 ? LYS B 21 ? TRP H 29 LYS H 36 B2 1 GLY B 133 ? TRP B 141 ? GLY H 133 TRP H 141 B2 2 LEU B 160 ? ILE B 167 ? LEU H 155 ILE H 162 B2 3 ASN B 184 ? LYS B 191 ? ASN H 179 LYS H 185 B2 4 TYR B 237 ? THR B 241 ? TYR H 225 THR H 229 B2 5 ILE B 224 ? GLY B 230 ? ILE H 212 GLY H 219 B2 6 ARG B 218 ? GLN B 221 ? ARG H 206 GLN H 209 B2 7 GLY B 206 ? SER B 213 ? GLY H 196 SER H 203 B2 8 GLY B 133 ? TRP B 141 ? GLY H 133 TRP H 141 # _struct_site.id CAT _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 3 HIS B 43 ? HIS H 57 . ? 1_555 ? 2 CAT 3 ASP B 99 ? ASP H 102 . ? 1_555 ? 3 CAT 3 SER B 205 ? SER H 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 1HAH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HAH _atom_sites.fract_transf_matrix[1][1] 0.013937 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002775 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013814 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013869 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'CIS PROLINE - PRO H 37' 2 'RESIDUE TYR I 63 IN THE HIRUGEN MOLECULE IS BONDED TO SULFATO- TYROSINE.' # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR L H n A 1 2 PHE 2 1 1 PHE PHE L G n A 1 3 GLY 3 1 1 GLY GLY L F n A 1 4 SER 4 1 1 SER SER L E n A 1 5 GLY 5 1 1 GLY GLY L D n A 1 6 GLU 6 1 1 GLU GLU L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 14 14 ASP ASP L L n A 1 35 GLY 35 14 14 GLY GLY L M n A 1 36 ARG 36 15 15 ARG ARG L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 148 ? ? ? H A n B 2 150 ALA 150 148 ? ? ? H B n B 2 151 ASN 151 148 ? ? ? H C n B 2 152 VAL 152 148 ? ? ? H D n B 2 153 GLY 153 148 ? ? ? H E n B 2 154 LYS 154 148 ? ? ? H F n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 246 GLY GLY H . n B 2 259 GLU 259 247 247 GLU GLU H . n C 3 1 ASP 1 55 55 ASP ASP I . n C 3 2 PHE 2 56 56 PHE PHE I . n C 3 3 GLU 3 57 57 GLU GLU I . n C 3 4 GLU 4 58 58 GLU GLU I . n C 3 5 ILE 5 59 59 ILE ILE I . n C 3 6 PRO 6 60 60 PRO PRO I . n C 3 7 GLU 7 61 61 GLU GLU I . n C 3 8 GLU 8 62 62 GLU GLU I . n C 3 9 TYS 9 63 63 TYS TYS I . n C 3 10 LEU 10 64 64 LEU LEU I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 400 400 NAG NAG H . E 5 HOH 1 432 432 HOH HOH L . E 5 HOH 2 439 439 HOH HOH L . E 5 HOH 3 440 440 HOH HOH L . E 5 HOH 4 449 449 HOH HOH L . E 5 HOH 5 452 452 HOH HOH L . E 5 HOH 6 465 465 HOH HOH L . E 5 HOH 7 468 468 HOH HOH L . E 5 HOH 8 470 470 HOH HOH L . E 5 HOH 9 474 474 HOH HOH L . E 5 HOH 10 485 485 HOH HOH L . E 5 HOH 11 511 511 HOH HOH L . E 5 HOH 12 514 514 HOH HOH L . E 5 HOH 13 534 534 HOH HOH L . E 5 HOH 14 540 540 HOH HOH L . E 5 HOH 15 543 543 HOH HOH L . E 5 HOH 16 552 552 HOH HOH L . E 5 HOH 17 557 557 HOH HOH L . E 5 HOH 18 560 560 HOH HOH L . E 5 HOH 19 567 567 HOH HOH L . E 5 HOH 20 575 575 HOH HOH L . E 5 HOH 21 590 590 HOH HOH L . E 5 HOH 22 599 599 HOH HOH L . E 5 HOH 23 600 600 HOH HOH L . E 5 HOH 24 602 602 HOH HOH L . F 5 HOH 1 401 401 HOH HOH H . F 5 HOH 2 402 402 HOH HOH H . F 5 HOH 3 403 403 HOH HOH H . F 5 HOH 4 404 404 HOH HOH H . F 5 HOH 5 405 405 HOH HOH H . F 5 HOH 6 406 406 HOH HOH H . F 5 HOH 7 407 407 HOH HOH H . F 5 HOH 8 408 408 HOH HOH H . F 5 HOH 9 409 409 HOH HOH H . F 5 HOH 10 410 410 HOH HOH H . F 5 HOH 11 411 411 HOH HOH H . F 5 HOH 12 412 412 HOH HOH H . F 5 HOH 13 413 413 HOH HOH H . F 5 HOH 14 414 414 HOH HOH H . F 5 HOH 15 415 415 HOH HOH H . F 5 HOH 16 416 416 HOH HOH H . F 5 HOH 17 417 417 HOH HOH H . F 5 HOH 18 418 418 HOH HOH H . F 5 HOH 19 419 419 HOH HOH H . F 5 HOH 20 420 420 HOH HOH H . F 5 HOH 21 421 421 HOH HOH H . F 5 HOH 22 422 422 HOH HOH H . F 5 HOH 23 423 423 HOH HOH H . F 5 HOH 24 424 424 HOH HOH H . F 5 HOH 25 425 425 HOH HOH H . F 5 HOH 26 426 426 HOH HOH H . F 5 HOH 27 427 427 HOH HOH H . F 5 HOH 28 428 428 HOH HOH H . F 5 HOH 29 429 429 HOH HOH H . F 5 HOH 30 430 430 HOH HOH H . F 5 HOH 31 431 431 HOH HOH H . F 5 HOH 32 433 433 HOH HOH H . F 5 HOH 33 434 434 HOH HOH H . F 5 HOH 34 435 435 HOH HOH H . F 5 HOH 35 436 436 HOH HOH H . F 5 HOH 36 437 437 HOH HOH H . F 5 HOH 37 438 438 HOH HOH H . F 5 HOH 38 441 441 HOH HOH H . F 5 HOH 39 442 442 HOH HOH H . F 5 HOH 40 443 443 HOH HOH H . F 5 HOH 41 444 444 HOH HOH H . F 5 HOH 42 445 445 HOH HOH H . F 5 HOH 43 446 446 HOH HOH H . F 5 HOH 44 447 447 HOH HOH H . F 5 HOH 45 448 448 HOH HOH H . F 5 HOH 46 450 450 HOH HOH H . F 5 HOH 47 451 451 HOH HOH H . F 5 HOH 48 454 454 HOH HOH H . F 5 HOH 49 455 455 HOH HOH H . F 5 HOH 50 456 456 HOH HOH H . F 5 HOH 51 457 457 HOH HOH H . F 5 HOH 52 458 458 HOH HOH H . F 5 HOH 53 459 459 HOH HOH H . F 5 HOH 54 460 460 HOH HOH H . F 5 HOH 55 461 461 HOH HOH H . F 5 HOH 56 462 462 HOH HOH H . F 5 HOH 57 463 463 HOH HOH H . F 5 HOH 58 464 464 HOH HOH H . F 5 HOH 59 466 466 HOH HOH H . F 5 HOH 60 467 467 HOH HOH H . F 5 HOH 61 469 469 HOH HOH H . F 5 HOH 62 471 471 HOH HOH H . F 5 HOH 63 472 472 HOH HOH H . F 5 HOH 64 473 473 HOH HOH H . F 5 HOH 65 475 475 HOH HOH H . F 5 HOH 66 476 476 HOH HOH H . F 5 HOH 67 477 477 HOH HOH H . F 5 HOH 68 478 478 HOH HOH H . F 5 HOH 69 479 479 HOH HOH H . F 5 HOH 70 480 480 HOH HOH H . F 5 HOH 71 481 481 HOH HOH H . F 5 HOH 72 482 482 HOH HOH H . F 5 HOH 73 483 483 HOH HOH H . F 5 HOH 74 484 484 HOH HOH H . F 5 HOH 75 486 486 HOH HOH H . F 5 HOH 76 487 487 HOH HOH H . F 5 HOH 77 488 488 HOH HOH H . F 5 HOH 78 489 489 HOH HOH H . F 5 HOH 79 490 490 HOH HOH H . F 5 HOH 80 491 491 HOH HOH H . F 5 HOH 81 492 492 HOH HOH H . F 5 HOH 82 493 493 HOH HOH H . F 5 HOH 83 494 494 HOH HOH H . F 5 HOH 84 495 495 HOH HOH H . F 5 HOH 85 496 496 HOH HOH H . F 5 HOH 86 497 497 HOH HOH H . F 5 HOH 87 498 498 HOH HOH H . F 5 HOH 88 500 500 HOH HOH H . F 5 HOH 89 501 501 HOH HOH H . F 5 HOH 90 502 502 HOH HOH H . F 5 HOH 91 503 503 HOH HOH H . F 5 HOH 92 504 504 HOH HOH H . F 5 HOH 93 505 505 HOH HOH H . F 5 HOH 94 506 506 HOH HOH H . F 5 HOH 95 507 507 HOH HOH H . F 5 HOH 96 508 508 HOH HOH H . F 5 HOH 97 509 509 HOH HOH H . F 5 HOH 98 510 510 HOH HOH H . F 5 HOH 99 512 512 HOH HOH H . F 5 HOH 100 513 513 HOH HOH H . F 5 HOH 101 515 515 HOH HOH H . F 5 HOH 102 516 516 HOH HOH H . F 5 HOH 103 517 517 HOH HOH H . F 5 HOH 104 518 518 HOH HOH H . F 5 HOH 105 519 519 HOH HOH H . F 5 HOH 106 520 520 HOH HOH H . F 5 HOH 107 521 521 HOH HOH H . F 5 HOH 108 522 522 HOH HOH H . F 5 HOH 109 523 523 HOH HOH H . F 5 HOH 110 524 524 HOH HOH H . F 5 HOH 111 525 525 HOH HOH H . F 5 HOH 112 526 526 HOH HOH H . F 5 HOH 113 527 527 HOH HOH H . F 5 HOH 114 528 528 HOH HOH H . F 5 HOH 115 529 529 HOH HOH H . F 5 HOH 116 530 530 HOH HOH H . F 5 HOH 117 531 531 HOH HOH H . F 5 HOH 118 532 532 HOH HOH H . F 5 HOH 119 533 533 HOH HOH H . F 5 HOH 120 536 536 HOH HOH H . F 5 HOH 121 537 537 HOH HOH H . F 5 HOH 122 538 538 HOH HOH H . F 5 HOH 123 539 539 HOH HOH H . F 5 HOH 124 541 541 HOH HOH H . F 5 HOH 125 542 542 HOH HOH H . F 5 HOH 126 544 544 HOH HOH H . F 5 HOH 127 545 545 HOH HOH H . F 5 HOH 128 546 546 HOH HOH H . F 5 HOH 129 547 547 HOH HOH H . F 5 HOH 130 548 548 HOH HOH H . F 5 HOH 131 549 549 HOH HOH H . F 5 HOH 132 550 550 HOH HOH H . F 5 HOH 133 551 551 HOH HOH H . F 5 HOH 134 553 553 HOH HOH H . F 5 HOH 135 554 554 HOH HOH H . F 5 HOH 136 555 555 HOH HOH H . F 5 HOH 137 556 556 HOH HOH H . F 5 HOH 138 558 558 HOH HOH H . F 5 HOH 139 559 559 HOH HOH H . F 5 HOH 140 561 561 HOH HOH H . F 5 HOH 141 562 562 HOH HOH H . F 5 HOH 142 563 563 HOH HOH H . F 5 HOH 143 564 564 HOH HOH H . F 5 HOH 144 565 565 HOH HOH H . F 5 HOH 145 566 566 HOH HOH H . F 5 HOH 146 568 568 HOH HOH H . F 5 HOH 147 569 569 HOH HOH H . F 5 HOH 148 570 570 HOH HOH H . F 5 HOH 149 571 571 HOH HOH H . F 5 HOH 150 572 572 HOH HOH H . F 5 HOH 151 573 573 HOH HOH H . F 5 HOH 152 574 574 HOH HOH H . F 5 HOH 153 576 576 HOH HOH H . F 5 HOH 154 577 577 HOH HOH H . F 5 HOH 155 578 578 HOH HOH H . F 5 HOH 156 579 579 HOH HOH H . F 5 HOH 157 580 580 HOH HOH H . F 5 HOH 158 581 581 HOH HOH H . F 5 HOH 159 582 582 HOH HOH H . F 5 HOH 160 583 583 HOH HOH H . F 5 HOH 161 584 584 HOH HOH H . F 5 HOH 162 585 585 HOH HOH H . F 5 HOH 163 586 586 HOH HOH H . F 5 HOH 164 587 587 HOH HOH H . F 5 HOH 165 588 588 HOH HOH H . F 5 HOH 166 589 589 HOH HOH H . F 5 HOH 167 591 591 HOH HOH H . F 5 HOH 168 592 592 HOH HOH H . F 5 HOH 169 593 593 HOH HOH H . F 5 HOH 170 594 594 HOH HOH H . F 5 HOH 171 595 595 HOH HOH H . F 5 HOH 172 596 596 HOH HOH H . F 5 HOH 173 597 597 HOH HOH H . F 5 HOH 174 598 598 HOH HOH H . F 5 HOH 175 601 601 HOH HOH H . F 5 HOH 176 603 603 HOH HOH H . F 5 HOH 177 604 604 HOH HOH H . F 5 HOH 178 605 605 HOH HOH H . G 5 HOH 1 499 499 HOH HOH I . G 5 HOH 2 535 535 HOH HOH I . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B ASN 53 H ASN 60 G ASN 'GLYCOSYLATION SITE' 2 C TYS 9 I TYS 63 ? TYR O-SULFO-L-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4450 ? 1 MORE -17 ? 1 'SSA (A^2)' 13220 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 H HOH 508 ? F HOH . 2 1 H HOH 518 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-12-20 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2019-07-17 6 'Structure model' 1 5 2019-08-14 7 'Structure model' 1 6 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 7 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Refinement description' 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Derived calculations' 13 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type 4 5 'Structure model' software 5 5 'Structure model' struct_conn 6 6 'Structure model' software 7 7 'Structure model' chem_comp 8 7 'Structure model' entity 9 7 'Structure model' pdbx_chem_comp_identifier 10 7 'Structure model' pdbx_entity_nonpoly 11 7 'Structure model' struct_conn 12 7 'Structure model' struct_site 13 7 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.process_site' 2 5 'Structure model' '_software.classification' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_software.classification' 5 7 'Structure model' '_chem_comp.name' 6 7 'Structure model' '_chem_comp.type' 7 7 'Structure model' '_entity.pdbx_description' 8 7 'Structure model' '_pdbx_entity_nonpoly.name' 9 7 'Structure model' '_struct_conn.pdbx_role' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROLSQ refinement . ? 2 X-PLOR refinement . ? 3 X-PLOR phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEET PRESENTED AS *B1* ON SHEET RECORDS BELOW IS ACTUALLY A SIX-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEET PRESENTED AS *B2* ON SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED BETA-BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1HAH _pdbx_entry_details.compound_details ;THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN INDICATOR *I* IS USED FOR N-ACETYLHIRUDIN 53 - 64 WITH SULFATO-TYR 63. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;PEPTIDE ASP I 55 - LEU I 64 AT THE EXOSITE OF THROMBIN IS HIRUGEN MOLECULE, WHICH IS PART OF HIRUDIN 53 - 65. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 H _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 434 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 H _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 434 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.85 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CZ L ARG 15 ? ? NH1 L ARG 15 ? ? 1.405 1.326 0.079 0.013 N 2 1 N H GLY 219 ? ? CA H GLY 219 ? ? 1.549 1.456 0.093 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA L GLY 1 F ? C L GLY 1 F ? O L GLY 1 F ? 108.55 120.60 -12.05 1.80 N 2 1 CB L ASP 1 A ? CG L ASP 1 A ? OD1 L ASP 1 A ? 109.54 118.30 -8.76 0.90 N 3 1 CB L ASP 1 A ? CG L ASP 1 A ? OD2 L ASP 1 A ? 125.74 118.30 7.44 0.90 N 4 1 NH1 L ARG 4 ? ? CZ L ARG 4 ? ? NH2 L ARG 4 ? ? 112.74 119.40 -6.66 1.10 N 5 1 NE L ARG 4 ? ? CZ L ARG 4 ? ? NH2 L ARG 4 ? ? 124.17 120.30 3.87 0.50 N 6 1 CD L ARG 14 D ? NE L ARG 14 D ? CZ L ARG 14 D ? 134.17 123.60 10.57 1.40 N 7 1 NE L ARG 14 D ? CZ L ARG 14 D ? NH2 L ARG 14 D ? 125.62 120.30 5.32 0.50 N 8 1 OE1 L GLU 14 H ? CD L GLU 14 H ? OE2 L GLU 14 H ? 132.40 123.30 9.10 1.20 N 9 1 C L ILE 14 K ? N L ASP 14 L ? CA L ASP 14 L ? 136.79 121.70 15.09 2.50 Y 10 1 C L GLY 14 M ? N L ARG 15 ? ? CA L ARG 15 ? ? 146.17 121.70 24.47 2.50 Y 11 1 CD L ARG 15 ? ? NE L ARG 15 ? ? CZ L ARG 15 ? ? 143.49 123.60 19.89 1.40 N 12 1 NE L ARG 15 ? ? CZ L ARG 15 ? ? NH1 L ARG 15 ? ? 135.23 120.30 14.93 0.50 N 13 1 NE L ARG 15 ? ? CZ L ARG 15 ? ? NH2 L ARG 15 ? ? 109.85 120.30 -10.45 0.50 N 14 1 CG H GLU 18 ? ? CD H GLU 18 ? ? OE2 H GLU 18 ? ? 105.81 118.30 -12.49 2.00 N 15 1 N H SER 20 ? ? CA H SER 20 ? ? CB H SER 20 ? ? 120.88 110.50 10.38 1.50 N 16 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD1 H ASP 21 ? ? 124.09 118.30 5.79 0.90 N 17 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD2 H ASP 21 ? ? 108.10 118.30 -10.20 0.90 N 18 1 N H SER 27 ? ? CA H SER 27 ? ? CB H SER 27 ? ? 123.47 110.50 12.97 1.50 N 19 1 CB H LEU 33 ? ? CA H LEU 33 ? ? C H LEU 33 ? ? 121.76 110.20 11.56 1.90 N 20 1 CB H LEU 33 ? ? CG H LEU 33 ? ? CD2 H LEU 33 ? ? 96.71 111.00 -14.29 1.70 N 21 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH2 H ARG 35 ? ? 113.31 120.30 -6.99 0.50 N 22 1 CB H ASP 49 ? ? CG H ASP 49 ? ? OD2 H ASP 49 ? ? 111.30 118.30 -7.00 0.90 N 23 1 NE H ARG 50 ? B CZ H ARG 50 ? B NH2 H ARG 50 ? B 112.53 120.30 -7.77 0.50 N 24 1 CB H TYR 60 A ? CG H TYR 60 A ? CD2 H TYR 60 A ? 124.75 121.00 3.75 0.60 N 25 1 CB H TYR 60 A ? CG H TYR 60 A ? CD1 H TYR 60 A ? 115.09 121.00 -5.91 0.60 N 26 1 CB H ASP 60 E ? CG H ASP 60 E ? OD1 H ASP 60 E ? 112.83 118.30 -5.47 0.90 N 27 1 CB H PHE 60 H ? CG H PHE 60 H ? CD1 H PHE 60 H ? 116.29 120.80 -4.51 0.70 N 28 1 CA H THR 60 I ? CB H THR 60 I ? CG2 H THR 60 I ? 122.29 112.40 9.89 1.40 N 29 1 OE1 H GLU 61 ? ? CD H GLU 61 ? ? OE2 H GLU 61 ? ? 133.77 123.30 10.47 1.20 N 30 1 C H VAL 66 ? ? N H ARG 67 ? ? CA H ARG 67 ? ? 137.48 121.70 15.78 2.50 Y 31 1 NE H ARG 73 ? ? CZ H ARG 73 ? ? NH1 H ARG 73 ? ? 123.64 120.30 3.34 0.50 N 32 1 CG H ARG 75 ? B CD H ARG 75 ? B NE H ARG 75 ? B 131.10 111.80 19.30 2.10 N 33 1 CD H ARG 75 ? B NE H ARG 75 ? B CZ H ARG 75 ? B 148.90 123.60 25.30 1.40 N 34 1 NE H ARG 75 ? A CZ H ARG 75 ? A NH1 H ARG 75 ? A 117.01 120.30 -3.29 0.50 N 35 1 NE H ARG 75 ? A CZ H ARG 75 ? A NH2 H ARG 75 ? A 123.61 120.30 3.31 0.50 N 36 1 NE H ARG 75 ? B CZ H ARG 75 ? B NH2 H ARG 75 ? B 123.95 120.30 3.65 0.50 N 37 1 NE H ARG 77 A ? CZ H ARG 77 A ? NH1 H ARG 77 A ? 123.38 120.30 3.08 0.50 N 38 1 NE H ARG 77 A ? CZ H ARG 77 A ? NH2 H ARG 77 A ? 115.86 120.30 -4.44 0.50 N 39 1 CG H GLU 80 ? ? CD H GLU 80 ? ? OE2 H GLU 80 ? ? 105.80 118.30 -12.50 2.00 N 40 1 CA H MET 84 ? ? CB H MET 84 ? ? CG H MET 84 ? ? 102.86 113.30 -10.44 1.70 N 41 1 CB H TYR 94 ? ? CG H TYR 94 ? ? CD2 H TYR 94 ? ? 117.10 121.00 -3.90 0.60 N 42 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH1 H ARG 97 ? ? 126.62 120.30 6.32 0.50 N 43 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH2 H ARG 97 ? ? 112.53 120.30 -7.77 0.50 N 44 1 CB H ASP 100 ? ? CG H ASP 100 ? ? OD2 H ASP 100 ? ? 109.76 118.30 -8.54 0.90 N 45 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 128.28 120.30 7.98 0.50 N 46 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 113.10 120.30 -7.20 0.50 N 47 1 CB H ASP 102 ? ? CG H ASP 102 ? ? OD2 H ASP 102 ? ? 110.82 118.30 -7.48 0.90 N 48 1 O H ALA 113 ? ? C H ALA 113 ? ? N H PHE 114 ? ? 132.85 122.70 10.15 1.60 Y 49 1 CA H GLU 127 ? ? CB H GLU 127 ? ? CG H GLU 127 ? ? 126.66 113.40 13.26 2.20 N 50 1 CB H TYR 134 ? ? CG H TYR 134 ? ? CD2 H TYR 134 ? ? 115.55 121.00 -5.45 0.60 N 51 1 CD1 H TYR 134 ? ? CE1 H TYR 134 ? ? CZ H TYR 134 ? ? 114.19 119.80 -5.61 0.90 N 52 1 NE H ARG 137 ? ? CZ H ARG 137 ? ? NH1 H ARG 137 ? ? 112.49 120.30 -7.81 0.50 N 53 1 NE H ARG 137 ? ? CZ H ARG 137 ? ? NH2 H ARG 137 ? ? 125.46 120.30 5.16 0.50 N 54 1 N H VAL 154 ? ? CA H VAL 154 ? ? CB H VAL 154 ? ? 96.15 111.50 -15.35 2.20 N 55 1 CB H VAL 157 ? ? CA H VAL 157 ? ? C H VAL 157 ? ? 98.88 111.40 -12.52 1.90 N 56 1 NE H ARG 173 ? ? CZ H ARG 173 ? ? NH1 H ARG 173 ? ? 124.80 120.30 4.50 0.50 N 57 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH1 H ARG 175 ? ? 115.74 120.30 -4.56 0.50 N 58 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH2 H ARG 175 ? ? 124.87 120.30 4.57 0.50 N 59 1 CB H TYR 184 A ? CG H TYR 184 A ? CD1 H TYR 184 A ? 115.46 121.00 -5.54 0.60 N 60 1 C H GLU 186 B ? N H GLY 186 C ? CA H GLY 186 C ? 107.08 122.30 -15.22 2.10 Y 61 1 NE H ARG 187 ? ? CZ H ARG 187 ? ? NH2 H ARG 187 ? ? 123.63 120.30 3.33 0.50 N 62 1 OE1 H GLU 192 ? ? CD H GLU 192 ? ? OE2 H GLU 192 ? ? 130.89 123.30 7.59 1.20 N 63 1 CA H SER 195 ? ? C H SER 195 ? ? O H SER 195 ? ? 107.21 120.10 -12.89 2.10 N 64 1 OD1 H ASN 205 ? ? CG H ASN 205 ? ? ND2 H ASN 205 ? ? 137.16 121.90 15.26 2.30 N 65 1 CB H ASP 221 ? ? CG H ASP 221 ? ? OD2 H ASP 221 ? ? 125.55 118.30 7.25 0.90 N 66 1 CD H ARG 221 A ? NE H ARG 221 A ? CZ H ARG 221 A ? 132.71 123.60 9.11 1.40 N 67 1 CD H ARG 233 ? ? NE H ARG 233 ? ? CZ H ARG 233 ? ? 132.16 123.60 8.56 1.40 N 68 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH1 H ARG 233 ? ? 128.89 120.30 8.59 0.50 N 69 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH2 H ARG 233 ? ? 113.32 120.30 -6.98 0.50 N 70 1 CA H VAL 241 ? ? CB H VAL 241 ? ? CG1 H VAL 241 ? ? 121.02 110.90 10.12 1.50 N 71 1 CB H ASP 243 ? ? CG H ASP 243 ? ? OD2 H ASP 243 ? ? 111.40 118.30 -6.90 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 1 G ? 172.89 -130.16 2 1 GLU L 1 C ? -106.22 -105.55 3 1 ALA L 1 B ? -156.58 -53.49 4 1 PHE L 7 ? ? -128.58 -66.19 5 1 TYR L 14 J ? -93.90 32.74 6 1 ASP L 14 L ? 45.08 132.07 7 1 SER H 48 ? ? -160.78 -167.15 8 1 TYR H 60 A ? -157.20 80.24 9 1 HIS H 71 ? ? -126.11 -62.84 10 1 ILE H 79 ? ? -120.73 -62.52 11 1 LYS H 87 ? ? -173.14 146.92 12 1 LYS H 186 D ? -176.39 133.19 13 1 SER H 195 ? ? -49.28 151.75 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 PRO L 5 ? ? -10.35 2 1 ILE H 16 ? ? -11.74 3 1 LEU H 160 ? ? -10.51 4 1 GLY H 188 ? ? -11.67 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG L 14 D ? 0.227 'SIDE CHAIN' 2 1 ARG L 15 ? ? 0.133 'SIDE CHAIN' 3 1 ARG H 50 ? ? 0.202 'SIDE CHAIN' 4 1 ARG H 101 ? ? 0.101 'SIDE CHAIN' 5 1 ASP H 102 ? ? 0.080 'SIDE CHAIN' 6 1 ARG H 173 ? ? 0.137 'SIDE CHAIN' 7 1 ARG H 187 ? ? 0.121 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H THR 148 A B THR 149 2 1 Y 1 H ALA 148 B B ALA 150 3 1 Y 1 H ASN 148 C B ASN 151 4 1 Y 1 H VAL 148 D B VAL 152 5 1 Y 1 H GLY 148 E B GLY 153 6 1 Y 1 H LYS 148 F B LYS 154 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH #