data_1HAI # _entry.id 1HAI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HAI WWPDB D_1000173746 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HAI _pdbx_database_status.recvd_initial_deposition_date 1994-06-27 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tulinsky, A.' 1 'Vijayalakshmi, J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The isomorphous structures of prethrombin2, hirugen-, and PPACK-thrombin: changes accompanying activation and exosite binding to thrombin. ; 'Protein Sci.' 3 2254 2271 1994 PRCIEI US 0961-8368 0795 ? 7756983 ? 1 'Refined Structure of the Hirudin-Thrombin Complex' J.Mol.Biol. 221 583 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Structure of the Hirugen and Hirulog 1 Complexes of Alpha-Thrombin' J.Mol.Biol. 221 1379 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vijayalakshmi, J.' 1 ? primary 'Padmanabhan, K.P.' 2 ? primary 'Mann, K.G.' 3 ? primary 'Tulinsky, A.' 4 ? 1 'Rydel, T.J.' 5 ? 1 'Tulinsky, A.' 6 ? 1 'Bode, W.' 7 ? 1 'Huber, R.' 8 ? 2 'Skrzypczak-Jankun, E.' 9 ? 2 'Carperos, V.E.' 10 ? 2 'Ravichandran, K.G.' 11 ? 2 'Tulinsky, A.' 12 ? 2 'Westbrook, M.' 13 ? 2 'Maraganore, J.M.' 14 ? # _cell.entry_id 1HAI _cell.length_a 70.970 _cell.length_b 72.500 _cell.length_c 72.570 _cell.angle_alpha 90.00 _cell.angle_beta 100.50 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HAI _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'ALPHA-THROMBIN (SMALL SUBUNIT)' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'ALPHA-THROMBIN (LARGE SUBUNIT)' 29780.219 1 3.4.21.5 ? ? ? 3 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 194 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? PLASMA ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? PLASMA ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 1 P00734 1 ;MAHVRGLQLPGCLALAALCSLVHSQHVFLAPQQARSLLQRVRRANTFLEEVRKGNLERECVEETCSYEEAFEALESSTAT DVFWAKYTACETARTPRDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNP DSSTTGPWCYTTDPTVRRQECSIPVCGQDQVTVAMTPRSEGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASA QAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGRTATSEY QTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRW VLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKR GDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE ; ? 2 UNP THRB_HUMAN 2 P00734 1 ;MAHVRGLQLPGCLALAALCSLVHSQHVFLAPQQARSLLQRVRRANTFLEEVRKGNLERECVEETCSYEEAFEALESSTAT DVFWAKYTACETARTPRDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNP DSSTTGPWCYTTDPTVRRQECSIPVCGQDQVTVAMTPRSEGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASA QAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGRTATSEY QTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRW VLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKR GDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HAI L 9 ? 36 ? P00734 328 ? 363 ? 1 15 2 2 1HAI H 1 ? 259 ? P00734 364 ? 622 ? 16 247 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HAI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.02 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1HAI _refine.ls_number_reflns_obs 13404 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.139 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.139 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE REGIONS WITH INTERRUPTED ELECTRON DENSITIES ARE FOUND IN THE N-TERMINAL AND C-TERMINAL REGIONS OF A CHAIN, AND SOME RESIDUES IN THE AUTOLYSIS LOOP. THESE REGIONS INCLUDE: THR L 1H - GLU L 1C; ILE L 14K - ARG L 15; THR H 147 AND TRP H 148. RESIDUES THR H 149 - LYS H 149E IN THE GAMMA AUTOLYSIS LOOP ARE FOUND WITH NO ELECTRON DENSITIES AND ARE NOT INCLUDED IN THIS ENTRY. OTHER ATOMS WITH NO DENSITIES ARE GIVEN OCCUPANCY VALUES OF 0.01 IN THIS ENTRY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2340 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 2578 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.4 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.3 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 3.0 2.5 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 4.2 3.0 ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1HAI _struct.title ;THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE BINDING TO THROMBIN ; _struct.pdbx_descriptor 'ALPHA THROMBIN (E.C.3.4.21.5) COMPLEXED WITH D-PHE-PRO-ARG-CHLOROMETHYLKETONE (PPACK)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HAI _struct_keywords.pdbx_keywords 'HYDROLASE/hydrolase inhibitor' _struct_keywords.text 'SERINE PROTEINASE, HYDROLASE-hydrolase inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 THR A 24 B GLU A 30 H THR L 14 GLU L 14 1 ? 7 HELX_P HELX_P2 H2 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P3 H3 GLU B 169 ? ASP B 175 ? GLU H 164 ASP H 170 1 ? 7 HELX_P HELX_P4 H4 HIS B 242 ? GLN B 256 ? HIS H 230 GLN H 244 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.059 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.083 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.118 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 1.979 ? ? covale1 covale one ? C 0G6 . C3 ? ? ? 1_555 B HIS 43 NE2 ? ? H 0G6 1 H HIS 57 1_555 ? ? ? ? ? ? ? 1.493 ? ? covale2 covale none ? C 0G6 . C2 ? ? ? 1_555 B SER 205 OG ? ? H 0G6 1 H SER 195 1_555 ? ? ? ? ? ? ? 1.526 ? ? covale3 covale one ? B ASN 53 ND2 ? G ? 1_555 D NAG . C1 ? ? H ASN 60 H NAG 400 1_555 ? ? ? ? ? ? ? 1.428 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details B1 ? 7 ? B2 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel B1 5 6 ? anti-parallel B1 6 7 ? anti-parallel B2 1 2 ? anti-parallel B2 2 3 ? anti-parallel B2 3 4 ? anti-parallel B2 4 5 ? anti-parallel B2 5 6 ? anti-parallel B2 6 7 ? anti-parallel B2 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B1 1 TRP B 14 ? LYS B 21 ? TRP H 29 LYS H 36 B1 2 LEU B 27 ? ILE B 33 ? LEU H 41 ILE H 47 B1 3 ARG B 36 ? ALA B 41 ? ARG H 50 ALA H 55 B1 4 ARG B 98 ? LYS B 106 ? ARG H 101 LYS H 109 B1 5 GLU B 76 ? PRO B 88 ? GLU H 80 PRO H 92 B1 6 ASP B 58 ? GLY B 64 ? ASP H 63 GLY H 69 B1 7 TRP B 14 ? LYS B 21 ? TRP H 29 LYS H 36 B2 1 GLY B 133 ? TRP B 141 ? GLY H 133 TRP H 141 B2 2 LEU B 160 ? ILE B 167 ? LEU H 155 ILE H 162 B2 3 ASN B 184 ? LYS B 191 ? ASN H 179 LYS H 185 B2 4 TYR B 237 ? THR B 241 ? TYR H 225 THR H 229 B2 5 ILE B 224 ? GLY B 230 ? ILE H 212 GLY H 219 B2 6 ARG B 218 ? GLN B 221 ? ARG H 206 GLN H 209 B2 7 GLY B 206 ? SER B 213 ? GLY H 196 SER H 203 B2 8 GLY B 133 ? TRP B 141 ? GLY H 133 TRP H 141 # _database_PDB_matrix.entry_id 1HAI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HAI _atom_sites.fract_transf_matrix[1][1] 0.014090 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002612 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013793 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014014 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO H 37' # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR L H n A 1 2 PHE 2 1 1 PHE PHE L G n A 1 3 GLY 3 1 1 GLY GLY L F n A 1 4 SER 4 1 1 SER SER L E n A 1 5 GLY 5 1 1 GLY GLY L D n A 1 6 GLU 6 1 1 GLU GLU L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 14 14 ASP ASP L L n A 1 35 GLY 35 14 14 GLY GLY L M n A 1 36 ARG 36 15 15 ARG ARG L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 148 ? ? ? H A n B 2 150 ALA 150 148 ? ? ? H B n B 2 151 ASN 151 148 ? ? ? H C n B 2 152 VAL 152 148 ? ? ? H D n B 2 153 GLY 153 148 ? ? ? H E n B 2 154 LYS 154 148 ? ? ? H F n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 246 GLY GLY H . n B 2 259 GLU 259 247 247 GLU GLU H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0G6 1 1 1 0G6 DPN H . D 4 NAG 1 400 400 NAG NAG H . E 5 HOH 1 416 416 HOH HOH L . E 5 HOH 2 425 425 HOH HOH L . E 5 HOH 3 432 432 HOH HOH L . E 5 HOH 4 463 463 HOH HOH L . E 5 HOH 5 472 472 HOH HOH L . E 5 HOH 6 473 473 HOH HOH L . E 5 HOH 7 484 484 HOH HOH L . E 5 HOH 8 491 491 HOH HOH L . E 5 HOH 9 493 493 HOH HOH L . E 5 HOH 10 506 506 HOH HOH L . E 5 HOH 11 513 513 HOH HOH L . E 5 HOH 12 524 524 HOH HOH L . E 5 HOH 13 533 533 HOH HOH L . E 5 HOH 14 549 549 HOH HOH L . E 5 HOH 15 552 552 HOH HOH L . E 5 HOH 16 557 557 HOH HOH L . E 5 HOH 17 567 567 HOH HOH L . E 5 HOH 18 577 577 HOH HOH L . E 5 HOH 19 588 588 HOH HOH L . E 5 HOH 20 590 590 HOH HOH L . E 5 HOH 21 591 591 HOH HOH L . F 5 HOH 1 401 401 HOH HOH H . F 5 HOH 2 402 402 HOH HOH H . F 5 HOH 3 403 403 HOH HOH H . F 5 HOH 4 404 404 HOH HOH H . F 5 HOH 5 405 405 HOH HOH H . F 5 HOH 6 406 406 HOH HOH H . F 5 HOH 7 407 407 HOH HOH H . F 5 HOH 8 408 408 HOH HOH H . F 5 HOH 9 409 409 HOH HOH H . F 5 HOH 10 410 410 HOH HOH H . F 5 HOH 11 411 411 HOH HOH H . F 5 HOH 12 412 412 HOH HOH H . F 5 HOH 13 413 413 HOH HOH H . F 5 HOH 14 414 414 HOH HOH H . F 5 HOH 15 415 415 HOH HOH H . F 5 HOH 16 417 417 HOH HOH H . F 5 HOH 17 418 418 HOH HOH H . F 5 HOH 18 419 419 HOH HOH H . F 5 HOH 19 420 420 HOH HOH H . F 5 HOH 20 421 421 HOH HOH H . F 5 HOH 21 422 422 HOH HOH H . F 5 HOH 22 423 423 HOH HOH H . F 5 HOH 23 424 424 HOH HOH H . F 5 HOH 24 426 426 HOH HOH H . F 5 HOH 25 427 427 HOH HOH H . F 5 HOH 26 428 428 HOH HOH H . F 5 HOH 27 429 429 HOH HOH H . F 5 HOH 28 430 430 HOH HOH H . F 5 HOH 29 431 431 HOH HOH H . F 5 HOH 30 433 433 HOH HOH H . F 5 HOH 31 434 434 HOH HOH H . F 5 HOH 32 435 435 HOH HOH H . F 5 HOH 33 436 436 HOH HOH H . F 5 HOH 34 437 437 HOH HOH H . F 5 HOH 35 438 438 HOH HOH H . F 5 HOH 36 439 439 HOH HOH H . F 5 HOH 37 440 440 HOH HOH H . F 5 HOH 38 441 441 HOH HOH H . F 5 HOH 39 442 442 HOH HOH H . F 5 HOH 40 443 443 HOH HOH H . F 5 HOH 41 444 444 HOH HOH H . F 5 HOH 42 445 445 HOH HOH H . F 5 HOH 43 446 446 HOH HOH H . F 5 HOH 44 447 447 HOH HOH H . F 5 HOH 45 448 448 HOH HOH H . F 5 HOH 46 449 449 HOH HOH H . F 5 HOH 47 450 450 HOH HOH H . F 5 HOH 48 451 451 HOH HOH H . F 5 HOH 49 452 452 HOH HOH H . F 5 HOH 50 453 453 HOH HOH H . F 5 HOH 51 454 454 HOH HOH H . F 5 HOH 52 455 455 HOH HOH H . F 5 HOH 53 456 456 HOH HOH H . F 5 HOH 54 457 457 HOH HOH H . F 5 HOH 55 458 458 HOH HOH H . F 5 HOH 56 459 459 HOH HOH H . F 5 HOH 57 460 460 HOH HOH H . F 5 HOH 58 461 461 HOH HOH H . F 5 HOH 59 462 462 HOH HOH H . F 5 HOH 60 464 464 HOH HOH H . F 5 HOH 61 465 465 HOH HOH H . F 5 HOH 62 466 466 HOH HOH H . F 5 HOH 63 467 467 HOH HOH H . F 5 HOH 64 468 468 HOH HOH H . F 5 HOH 65 469 469 HOH HOH H . F 5 HOH 66 470 470 HOH HOH H . F 5 HOH 67 471 471 HOH HOH H . F 5 HOH 68 474 474 HOH HOH H . F 5 HOH 69 475 475 HOH HOH H . F 5 HOH 70 476 476 HOH HOH H . F 5 HOH 71 477 477 HOH HOH H . F 5 HOH 72 478 478 HOH HOH H . F 5 HOH 73 479 479 HOH HOH H . F 5 HOH 74 480 480 HOH HOH H . F 5 HOH 75 481 481 HOH HOH H . F 5 HOH 76 482 482 HOH HOH H . F 5 HOH 77 483 483 HOH HOH H . F 5 HOH 78 485 485 HOH HOH H . F 5 HOH 79 486 486 HOH HOH H . F 5 HOH 80 487 487 HOH HOH H . F 5 HOH 81 488 488 HOH HOH H . F 5 HOH 82 489 489 HOH HOH H . F 5 HOH 83 490 490 HOH HOH H . F 5 HOH 84 492 492 HOH HOH H . F 5 HOH 85 494 494 HOH HOH H . F 5 HOH 86 495 495 HOH HOH H . F 5 HOH 87 496 496 HOH HOH H . F 5 HOH 88 497 497 HOH HOH H . F 5 HOH 89 498 498 HOH HOH H . F 5 HOH 90 499 499 HOH HOH H . F 5 HOH 91 500 500 HOH HOH H . F 5 HOH 92 501 501 HOH HOH H . F 5 HOH 93 502 502 HOH HOH H . F 5 HOH 94 503 503 HOH HOH H . F 5 HOH 95 504 504 HOH HOH H . F 5 HOH 96 505 505 HOH HOH H . F 5 HOH 97 507 507 HOH HOH H . F 5 HOH 98 508 508 HOH HOH H . F 5 HOH 99 509 509 HOH HOH H . F 5 HOH 100 510 510 HOH HOH H . F 5 HOH 101 511 511 HOH HOH H . F 5 HOH 102 512 512 HOH HOH H . F 5 HOH 103 514 514 HOH HOH H . F 5 HOH 104 515 515 HOH HOH H . F 5 HOH 105 516 516 HOH HOH H . F 5 HOH 106 517 517 HOH HOH H . F 5 HOH 107 518 518 HOH HOH H . F 5 HOH 108 519 519 HOH HOH H . F 5 HOH 109 520 520 HOH HOH H . F 5 HOH 110 521 521 HOH HOH H . F 5 HOH 111 522 522 HOH HOH H . F 5 HOH 112 523 523 HOH HOH H . F 5 HOH 113 525 525 HOH HOH H . F 5 HOH 114 526 526 HOH HOH H . F 5 HOH 115 527 527 HOH HOH H . F 5 HOH 116 528 528 HOH HOH H . F 5 HOH 117 529 529 HOH HOH H . F 5 HOH 118 530 530 HOH HOH H . F 5 HOH 119 531 531 HOH HOH H . F 5 HOH 120 532 532 HOH HOH H . F 5 HOH 121 534 534 HOH HOH H . F 5 HOH 122 535 535 HOH HOH H . F 5 HOH 123 536 536 HOH HOH H . F 5 HOH 124 537 537 HOH HOH H . F 5 HOH 125 538 538 HOH HOH H . F 5 HOH 126 539 539 HOH HOH H . F 5 HOH 127 540 540 HOH HOH H . F 5 HOH 128 541 541 HOH HOH H . F 5 HOH 129 542 542 HOH HOH H . F 5 HOH 130 543 543 HOH HOH H . F 5 HOH 131 544 544 HOH HOH H . F 5 HOH 132 545 545 HOH HOH H . F 5 HOH 133 546 546 HOH HOH H . F 5 HOH 134 547 547 HOH HOH H . F 5 HOH 135 548 548 HOH HOH H . F 5 HOH 136 550 550 HOH HOH H . F 5 HOH 137 551 551 HOH HOH H . F 5 HOH 138 553 553 HOH HOH H . F 5 HOH 139 554 554 HOH HOH H . F 5 HOH 140 555 555 HOH HOH H . F 5 HOH 141 556 556 HOH HOH H . F 5 HOH 142 558 558 HOH HOH H . F 5 HOH 143 559 559 HOH HOH H . F 5 HOH 144 560 560 HOH HOH H . F 5 HOH 145 561 561 HOH HOH H . F 5 HOH 146 562 562 HOH HOH H . F 5 HOH 147 563 563 HOH HOH H . F 5 HOH 148 564 564 HOH HOH H . F 5 HOH 149 565 565 HOH HOH H . F 5 HOH 150 566 566 HOH HOH H . F 5 HOH 151 568 568 HOH HOH H . F 5 HOH 152 569 569 HOH HOH H . F 5 HOH 153 570 570 HOH HOH H . F 5 HOH 154 571 571 HOH HOH H . F 5 HOH 155 572 572 HOH HOH H . F 5 HOH 156 573 573 HOH HOH H . F 5 HOH 157 574 574 HOH HOH H . F 5 HOH 158 575 575 HOH HOH H . F 5 HOH 159 576 576 HOH HOH H . F 5 HOH 160 578 578 HOH HOH H . F 5 HOH 161 579 579 HOH HOH H . F 5 HOH 162 580 580 HOH HOH H . F 5 HOH 163 581 581 HOH HOH H . F 5 HOH 164 582 582 HOH HOH H . F 5 HOH 165 583 583 HOH HOH H . F 5 HOH 166 584 584 HOH HOH H . F 5 HOH 167 585 585 HOH HOH H . F 5 HOH 168 586 586 HOH HOH H . F 5 HOH 169 587 587 HOH HOH H . F 5 HOH 170 589 589 HOH HOH H . F 5 HOH 171 592 592 HOH HOH H . F 5 HOH 172 593 593 HOH HOH H . F 5 HOH 173 594 594 HOH HOH H . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id C # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 60 _pdbx_struct_mod_residue.PDB_ins_code G _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4150 ? 1 MORE -13 ? 1 'SSA (A^2)' 12480 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 H HOH 575 ? F HOH . 2 1 H HOH 576 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-12-20 2 'Structure model' 1 1 2008-03-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-02-27 5 'Structure model' 1 4 2017-11-29 6 'Structure model' 1 5 2019-07-17 7 'Structure model' 1 6 2019-08-14 8 'Structure model' 1 7 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 8 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' Other 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Refinement description' 14 7 'Structure model' 'Data collection' 15 7 'Structure model' 'Refinement description' 16 8 'Structure model' 'Data collection' 17 8 'Structure model' 'Derived calculations' 18 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_database_status 2 5 'Structure model' struct_conf 3 5 'Structure model' struct_conf_type 4 6 'Structure model' software 5 6 'Structure model' struct_conn 6 7 'Structure model' software 7 8 'Structure model' chem_comp 8 8 'Structure model' entity 9 8 'Structure model' pdbx_chem_comp_identifier 10 8 'Structure model' pdbx_entity_nonpoly 11 8 'Structure model' struct_conn 12 8 'Structure model' struct_site 13 8 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_pdbx_database_status.process_site' 2 6 'Structure model' '_software.classification' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 7 'Structure model' '_software.classification' 5 8 'Structure model' '_chem_comp.name' 6 8 'Structure model' '_chem_comp.type' 7 8 'Structure model' '_entity.pdbx_description' 8 8 'Structure model' '_pdbx_entity_nonpoly.name' 9 8 'Structure model' '_struct_conn.pdbx_dist_value' 10 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 8 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 12 8 'Structure model' '_struct_conn.pdbx_role' 13 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 8 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 8 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROLSQ refinement . ? 2 X-PLOR refinement . ? 3 X-PLOR phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEET PRESENTED AS *B1* ON SHEET RECORDS BELOW IS ACTUALLY A SIX-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEET PRESENTED AS *B2* ON SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED BETA-BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1HAI _pdbx_entry_details.compound_details ;THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. THREE-LETTER CODE 0G6 IS USED FOR PPACK ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;CHLOROMETHYLKETONE OF D-PHE-PRO-ARG-CHLOROMETHYLKETONE (PPACK) TERMINAL SUBCOMPONENT 0QE HAS ONLY METHYLENE GROUP CH2 REMAINED. PPACK BINDS COVALENTLY TO THROMBIN FORMING 1) HEMIKETAL LINK FROM C OF ARG SUBCOMPONENT TO OG OF SER H 195, C OF ARG SUBCOMPONENT BECOMING TETRAHEDRAL. 2) COVALENT LINK FROM TERMINAL REMAINED METHYLENE GROUP OF 0QE TO NE2 OF HIS H 57. ; _pdbx_entry_details.sequence_details ;CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH2 H ARG 187 ? ? OD1 H ASP 222 ? ? 2.04 2 1 NH1 H ARG 50 ? B O H LEU 108 ? ? 2.06 3 1 N L SER 1 E ? O H LEU 123 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 H _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 415 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 H _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 415 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 L _pdbx_validate_rmsd_bond.auth_comp_id_1 ILE _pdbx_validate_rmsd_bond.auth_seq_id_1 14 _pdbx_validate_rmsd_bond.PDB_ins_code_1 K _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 L _pdbx_validate_rmsd_bond.auth_comp_id_2 ASP _pdbx_validate_rmsd_bond.auth_seq_id_2 14 _pdbx_validate_rmsd_bond.PDB_ins_code_2 L _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.578 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.242 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG L GLU 1 C ? CD L GLU 1 C ? OE2 L GLU 1 C ? 134.86 118.30 16.56 2.00 N 2 1 CB L ASP 1 A ? CG L ASP 1 A ? OD1 L ASP 1 A ? 111.33 118.30 -6.97 0.90 N 3 1 CB L ASP 1 A ? CG L ASP 1 A ? OD2 L ASP 1 A ? 124.15 118.30 5.85 0.90 N 4 1 O L LEU 3 ? ? C L LEU 3 ? ? N L ARG 4 ? ? 132.32 122.70 9.62 1.60 Y 5 1 CA L GLY 14 M ? C L GLY 14 M ? N L ARG 15 ? ? 84.44 117.20 -32.76 2.20 Y 6 1 O L GLY 14 M ? C L GLY 14 M ? N L ARG 15 ? ? 154.62 122.70 31.92 1.60 Y 7 1 CD L ARG 15 ? ? NE L ARG 15 ? ? CZ L ARG 15 ? ? 145.11 123.60 21.51 1.40 N 8 1 NH1 L ARG 15 ? ? CZ L ARG 15 ? ? NH2 L ARG 15 ? ? 107.31 119.40 -12.09 1.10 N 9 1 NE L ARG 15 ? ? CZ L ARG 15 ? ? NH1 L ARG 15 ? ? 127.48 120.30 7.18 0.50 N 10 1 NE L ARG 15 ? ? CZ L ARG 15 ? ? NH2 L ARG 15 ? ? 125.20 120.30 4.90 0.50 N 11 1 O H SER 20 ? ? C H SER 20 ? ? N H ASP 21 ? ? 132.37 122.70 9.67 1.60 Y 12 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD1 H ASP 21 ? ? 123.91 118.30 5.61 0.90 N 13 1 CB H SER 27 ? ? CA H SER 27 ? ? C H SER 27 ? ? 98.60 110.10 -11.50 1.90 N 14 1 CD H ARG 35 ? ? NE H ARG 35 ? ? CZ H ARG 35 ? ? 113.26 123.60 -10.34 1.40 N 15 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH1 H ARG 35 ? ? 124.56 120.30 4.26 0.50 N 16 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH2 H ARG 35 ? ? 114.72 120.30 -5.58 0.50 N 17 1 OE1 H GLU 39 ? ? CD H GLU 39 ? ? OE2 H GLU 39 ? ? 133.51 123.30 10.21 1.20 N 18 1 CB H ASP 49 ? ? CG H ASP 49 ? ? OD2 H ASP 49 ? ? 127.61 118.30 9.31 0.90 N 19 1 CB H ARG 50 ? ? CA H ARG 50 ? ? C H ARG 50 ? ? 97.90 110.40 -12.50 2.00 N 20 1 CD H ARG 50 ? A NE H ARG 50 ? A CZ H ARG 50 ? A 109.98 123.60 -13.62 1.40 N 21 1 CD H ARG 50 ? B NE H ARG 50 ? B CZ H ARG 50 ? B 114.37 123.60 -9.23 1.40 N 22 1 NH1 H ARG 50 ? A CZ H ARG 50 ? A NH2 H ARG 50 ? A 127.07 119.40 7.67 1.10 N 23 1 NE H ARG 50 ? A CZ H ARG 50 ? A NH1 H ARG 50 ? A 113.18 120.30 -7.12 0.50 N 24 1 NE H ARG 50 ? B CZ H ARG 50 ? B NH1 H ARG 50 ? B 114.86 120.30 -5.44 0.50 N 25 1 CG1 H VAL 66 ? ? CB H VAL 66 ? ? CG2 H VAL 66 ? ? 120.72 110.90 9.82 1.60 N 26 1 NE H ARG 67 ? ? CZ H ARG 67 ? ? NH1 H ARG 67 ? ? 125.95 120.30 5.65 0.50 N 27 1 NH1 H ARG 73 ? ? CZ H ARG 73 ? ? NH2 H ARG 73 ? ? 112.77 119.40 -6.63 1.10 N 28 1 NE H ARG 73 ? ? CZ H ARG 73 ? ? NH1 H ARG 73 ? ? 126.40 120.30 6.10 0.50 N 29 1 CB H ARG 75 ? ? CG H ARG 75 ? ? CD H ARG 75 ? ? 127.66 111.60 16.06 2.60 N 30 1 NH1 H ARG 75 ? ? CZ H ARG 75 ? ? NH2 H ARG 75 ? ? 110.91 119.40 -8.49 1.10 N 31 1 NE H ARG 75 ? ? CZ H ARG 75 ? ? NH1 H ARG 75 ? ? 123.46 120.30 3.16 0.50 N 32 1 NE H ARG 75 ? ? CZ H ARG 75 ? ? NH2 H ARG 75 ? ? 125.50 120.30 5.20 0.50 N 33 1 OE1 H GLU 77 ? ? CD H GLU 77 ? ? OE2 H GLU 77 ? ? 115.67 123.30 -7.63 1.20 N 34 1 CA H MET 84 ? ? CB H MET 84 ? ? CG H MET 84 ? ? 101.74 113.30 -11.56 1.70 N 35 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH1 H ARG 97 ? ? 129.41 120.30 9.11 0.50 N 36 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH2 H ARG 97 ? ? 111.88 120.30 -8.42 0.50 N 37 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 125.76 120.30 5.46 0.50 N 38 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 112.74 120.30 -7.56 0.50 N 39 1 CB H ASP 116 ? ? CG H ASP 116 ? ? OD1 H ASP 116 ? ? 125.86 118.30 7.56 0.90 N 40 1 CB H TYR 117 ? ? CG H TYR 117 ? ? CD2 H TYR 117 ? ? 114.29 121.00 -6.71 0.60 N 41 1 CB H TYR 117 ? ? CG H TYR 117 ? ? CD1 H TYR 117 ? ? 126.24 121.00 5.24 0.60 N 42 1 NH1 H ARG 126 ? ? CZ H ARG 126 ? ? NH2 H ARG 126 ? ? 108.94 119.40 -10.46 1.10 N 43 1 NE H ARG 126 ? ? CZ H ARG 126 ? ? NH1 H ARG 126 ? ? 128.73 120.30 8.43 0.50 N 44 1 C H LEU 130 ? ? N H GLN 131 ? ? CA H GLN 131 ? ? 136.99 121.70 15.29 2.50 Y 45 1 CG H GLU 164 ? ? CD H GLU 164 ? ? OE1 H GLU 164 ? ? 133.62 118.30 15.32 2.00 N 46 1 NH1 H ARG 165 ? B CZ H ARG 165 ? B NH2 H ARG 165 ? B 112.24 119.40 -7.16 1.10 N 47 1 NE H ARG 165 ? A CZ H ARG 165 ? A NH1 H ARG 165 ? A 125.00 120.30 4.70 0.50 N 48 1 NE H ARG 165 ? B CZ H ARG 165 ? B NH1 H ARG 165 ? B 133.49 120.30 13.19 0.50 N 49 1 NE H ARG 165 ? B CZ H ARG 165 ? B NH2 H ARG 165 ? B 113.73 120.30 -6.57 0.50 N 50 1 NE H ARG 173 ? ? CZ H ARG 173 ? ? NH1 H ARG 173 ? ? 131.12 120.30 10.82 0.50 N 51 1 NE H ARG 173 ? ? CZ H ARG 173 ? ? NH2 H ARG 173 ? ? 107.45 120.30 -12.85 0.50 N 52 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH1 H ARG 175 ? ? 116.16 120.30 -4.14 0.50 N 53 1 NE H ARG 175 ? ? CZ H ARG 175 ? ? NH2 H ARG 175 ? ? 123.88 120.30 3.58 0.50 N 54 1 CB H ASP 178 ? ? CG H ASP 178 ? ? OD1 H ASP 178 ? ? 126.66 118.30 8.36 0.90 N 55 1 CB H ASP 178 ? ? CG H ASP 178 ? ? OD2 H ASP 178 ? ? 112.84 118.30 -5.46 0.90 N 56 1 CB H ASP 186 A ? CG H ASP 186 A ? OD1 H ASP 186 A ? 109.29 118.30 -9.01 0.90 N 57 1 CB H ASP 186 A ? CG H ASP 186 A ? OD2 H ASP 186 A ? 124.66 118.30 6.36 0.90 N 58 1 NE H ARG 187 ? ? CZ H ARG 187 ? ? NH2 H ARG 187 ? ? 124.01 120.30 3.71 0.50 N 59 1 OD1 H ASN 205 ? ? CG H ASN 205 ? ? ND2 H ASN 205 ? ? 138.05 121.90 16.15 2.30 N 60 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH1 H ARG 206 ? ? 123.99 120.30 3.69 0.50 N 61 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH2 H ARG 206 ? ? 116.24 120.30 -4.06 0.50 N 62 1 CA H VAL 213 ? ? C H VAL 213 ? ? O H VAL 213 ? ? 132.84 120.10 12.74 2.10 N 63 1 CD H ARG 221 A ? NE H ARG 221 A ? CZ H ARG 221 A ? 115.02 123.60 -8.58 1.40 N 64 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH1 H ARG 221 A ? 115.00 120.30 -5.30 0.50 N 65 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH2 H ARG 221 A ? 129.48 120.30 9.18 0.50 N 66 1 O H GLY 226 ? ? C H GLY 226 ? ? N H PHE 227 ? ? 132.35 122.70 9.65 1.60 Y 67 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH1 H ARG 233 ? ? 127.93 120.30 7.63 0.50 N 68 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH2 H ARG 233 ? ? 113.58 120.30 -6.72 0.50 N 69 1 CB H ASP 243 ? ? CA H ASP 243 ? ? C H ASP 243 ? ? 123.82 110.40 13.42 2.00 N 70 1 CB H ASP 243 ? ? CG H ASP 243 ? ? OD1 H ASP 243 ? ? 125.02 118.30 6.72 0.90 N 71 1 CB H ASP 243 ? ? CG H ASP 243 ? ? OD2 H ASP 243 ? ? 112.75 118.30 -5.55 0.90 N 72 1 C H PHE 245 ? ? N H GLY 246 ? ? CA H GLY 246 ? ? 137.81 122.30 15.51 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 1 G ? 159.95 -118.75 2 1 GLU L 1 C ? -74.98 -111.16 3 1 ALA L 1 B ? -144.54 -32.89 4 1 PHE L 7 ? ? -130.35 -65.61 5 1 TYR L 14 J ? -81.97 42.00 6 1 ILE L 14 K ? 39.20 57.07 7 1 ASP L 14 L ? 60.98 111.50 8 1 SER H 36 A ? -161.64 118.83 9 1 SER H 48 ? ? -174.08 -176.85 10 1 TYR H 60 A ? -155.50 82.84 11 1 ASN H 60 G ? -150.06 85.13 12 1 HIS H 71 ? ? -131.62 -56.22 13 1 ILE H 79 ? ? -131.52 -55.39 14 1 SER H 115 ? ? -171.11 -175.03 15 1 ARG H 126 ? ? -39.88 -38.84 16 1 LYS H 186 D ? 175.13 127.22 17 1 ARG H 187 ? ? -118.62 -167.29 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 PRO L 5 ? ? -10.87 2 1 ALA H 44 ? ? 10.74 3 1 SER H 195 ? ? -11.56 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG L 15 ? ? 0.096 'SIDE CHAIN' 2 1 ARG H 35 ? ? 0.122 'SIDE CHAIN' 3 1 ARG H 50 ? ? 0.267 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H THR 148 A B THR 149 2 1 Y 1 H ALA 148 B B ALA 150 3 1 Y 1 H ASN 148 C B ASN 151 4 1 Y 1 H VAL 148 D B VAL 152 5 1 Y 1 H GLY 148 E B GLY 153 6 1 Y 1 H LYS 148 F B LYS 154 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH #