HEADER HYDROLASE/HYDROLASE INHIBITOR 27-JUN-94 1HAI TITLE THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND PPACK- TITLE 2 THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE BINDING TO TITLE 3 THROMBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-THROMBIN (SMALL SUBUNIT); COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALPHA-THROMBIN (LARGE SUBUNIT); COMPND 7 CHAIN: H; COMPND 8 EC: 3.4.21.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLASMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 ORGAN: PLASMA KEYWDS SERINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,J.VIJAYALAKSHMI REVDAT 7 29-JUL-20 1HAI 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 14-AUG-19 1HAI 1 REMARK REVDAT 5 17-JUL-19 1HAI 1 REMARK LINK REVDAT 4 29-NOV-17 1HAI 1 HELIX REVDAT 3 13-JUL-11 1HAI 1 VERSN REVDAT 2 24-FEB-09 1HAI 1 VERSN REVDAT 1 20-DEC-94 1HAI 0 JRNL AUTH J.VIJAYALAKSHMI,K.P.PADMANABHAN,K.G.MANN,A.TULINSKY JRNL TITL THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-, AND JRNL TITL 2 PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE JRNL TITL 3 BINDING TO THROMBIN. JRNL REF PROTEIN SCI. V. 3 2254 1994 JRNL REFN ISSN 0961-8368 JRNL PMID 7756983 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER REMARK 1 TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 583 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN, REMARK 1 AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE REMARK 1 TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES OF REMARK 1 TITL 2 ALPHA-THROMBIN REMARK 1 REF J.MOL.BIOL. V. 221 1379 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.000 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.200 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE REGIONS WITH INTERRUPTED ELECTRON DENSITIES ARE FOUND REMARK 3 IN THE N-TERMINAL AND C-TERMINAL REGIONS OF A CHAIN, AND REMARK 3 SOME RESIDUES IN THE AUTOLYSIS LOOP. THESE REGIONS REMARK 3 INCLUDE: THR L 1H - GLU L 1C; ILE L 14K - ARG L 15; REMARK 3 THR H 147 AND TRP H 148. RESIDUES THR H 149 - LYS H 149E REMARK 3 IN THE GAMMA AUTOLYSIS LOOP ARE FOUND WITH NO ELECTRON REMARK 3 DENSITIES AND ARE NOT INCLUDED IN THIS ENTRY. OTHER ATOMS REMARK 3 WITH NO DENSITIES ARE GIVEN OCCUPANCY VALUES OF 0.01 IN REMARK 3 THIS ENTRY. REMARK 4 REMARK 4 1HAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.48500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.48500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 575 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 576 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN REMARK 400 INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN REMARK 400 INDICATOR *H* IS USED FOR RESIDUES 16 - 247. THREE-LETTER CODE 0G6 REMARK 400 IS USED FOR PPACK REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 148A REMARK 465 ALA H 148B REMARK 465 ASN H 148C REMARK 465 VAL H 148D REMARK 465 GLY H 148E REMARK 465 LYS H 148F REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG H 187 OD1 ASP H 222 2.04 REMARK 500 NH1 ARG H 50 O LEU H 108 2.06 REMARK 500 N SER L 1E O LEU H 123 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 415 O HOH H 415 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE L 14K C ASP L 14L N 0.242 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU L 1C CG - CD - OE2 ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP L 1A CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP L 1A CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU L 3 O - C - N ANGL. DEV. = 9.6 DEGREES REMARK 500 GLY L 14M CA - C - N ANGL. DEV. = -32.8 DEGREES REMARK 500 GLY L 14M O - C - N ANGL. DEV. = 31.9 DEGREES REMARK 500 ARG L 15 CD - NE - CZ ANGL. DEV. = 21.5 DEGREES REMARK 500 ARG L 15 NH1 - CZ - NH2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG L 15 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG L 15 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 SER H 20 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP H 21 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 SER H 27 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG H 35 CD - NE - CZ ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG H 35 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG H 35 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLU H 39 OE1 - CD - OE2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP H 49 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG H 50 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG H 50 CD - NE - CZ ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG H 50 CD - NE - CZ ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG H 50 NH1 - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG H 50 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG H 50 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 VAL H 66 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG H 67 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG H 73 NH1 - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG H 73 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG H 75 CB - CG - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG H 75 NH1 - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG H 75 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG H 75 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 GLU H 77 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 MET H 84 CA - CB - CG ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG H 97 NE - CZ - NH1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG H 97 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG H 101 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG H 101 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP H 116 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 TYR H 117 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TYR H 117 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG H 126 NH1 - CZ - NH2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG H 126 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 GLN H 131 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 GLU H 164 CG - CD - OE1 ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG H 165 NH1 - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG H 165 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG H 165 NE - CZ - NH1 ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG H 165 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG H 173 NE - CZ - NH1 ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 72 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 1G -118.75 159.95 REMARK 500 GLU L 1C -111.16 -74.98 REMARK 500 ALA L 1B -32.89 -144.54 REMARK 500 PHE L 7 -65.61 -130.35 REMARK 500 TYR L 14J 42.00 -81.97 REMARK 500 ILE L 14K 57.07 39.20 REMARK 500 ASP L 14L 111.50 60.98 REMARK 500 SER H 36A 118.83 -161.64 REMARK 500 SER H 48 -176.85 -174.08 REMARK 500 TYR H 60A 82.84 -155.50 REMARK 500 ASN H 60G 85.13 -150.06 REMARK 500 HIS H 71 -56.22 -131.62 REMARK 500 ILE H 79 -55.39 -131.52 REMARK 500 SER H 115 -175.03 -171.11 REMARK 500 ARG H 126 -38.84 -39.88 REMARK 500 LYS H 186D 127.22 175.13 REMARK 500 ARG H 187 -167.29 -118.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 15 0.10 SIDE CHAIN REMARK 500 ARG H 35 0.12 SIDE CHAIN REMARK 500 ARG H 50 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO L 5 -10.87 REMARK 500 ALA H 44 10.74 REMARK 500 SER H 195 -11.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CHLOROMETHYLKETONE OF D-PHE-PRO-ARG-CHLOROMETHYLKETONE (PPACK) REMARK 600 TERMINAL SUBCOMPONENT 0QE HAS ONLY METHYLENE GROUP CH2 REMAINED. REMARK 600 PPACK BINDS COVALENTLY TO THROMBIN FORMING REMARK 600 1) HEMIKETAL LINK FROM C OF ARG SUBCOMPONENT TO OG OF REMARK 600 SER H 195, C OF ARG SUBCOMPONENT BECOMING TETRAHEDRAL. REMARK 600 2) COVALENT LINK FROM TERMINAL REMAINED METHYLENE GROUP OF 0QE TO REMARK 600 NE2 OF HIS H 57. REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 H 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *B1* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY A SIX-STRANDED BETA-BARREL. THIS IS REPRESENTED REMARK 700 BY A SEVEN-STRANDED SHEET IN WHICH THE FIRST AND LAST REMARK 700 STRANDS ARE IDENTICAL. THE SHEET PRESENTED AS *B2* ON REMARK 700 SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED REMARK 700 BETA-BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED REMARK 700 SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS REMARK 999 USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE REMARK 999 STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, REMARK 999 3467-3475). DBREF 1HAI L 1 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1HAI H 16 247 UNP P00734 THRB_HUMAN 364 622 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU MODRES 1HAI ASN H 60G ASN GLYCOSYLATION SITE HET 0G6 H 1 30 HET NAG H 400 14 HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN 0G6 PPACK FORMUL 3 0G6 C21 H34 CL N6 O3 1+ FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *194(H2 O) HELIX 1 H1 THR L 14B GLU L 14H 1 7 HELIX 2 H2 ASP H 125 LEU H 130 1 9 HELIX 3 H3 GLU H 164 ASP H 170 1 7 HELIX 4 H4 HIS H 230 GLN H 244 1 15 SHEET 1 B1 7 TRP H 29 LYS H 36 0 SHEET 2 B1 7 LEU H 41 ILE H 47 -1 SHEET 3 B1 7 ARG H 50 ALA H 55 -1 SHEET 4 B1 7 ARG H 101 LYS H 109 -1 SHEET 5 B1 7 GLU H 80 PRO H 92 -1 SHEET 6 B1 7 ASP H 63 GLY H 69 -1 SHEET 7 B1 7 TRP H 29 LYS H 36 -1 SHEET 1 B2 8 GLY H 133 TRP H 141 0 SHEET 2 B2 8 LEU H 155 ILE H 162 -1 SHEET 3 B2 8 ASN H 179 LYS H 185 -1 SHEET 4 B2 8 TYR H 225 THR H 229 -1 SHEET 5 B2 8 ILE H 212 GLY H 219 -1 SHEET 6 B2 8 ARG H 206 GLN H 209 -1 SHEET 7 B2 8 GLY H 196 SER H 203 -1 SHEET 8 B2 8 GLY H 133 TRP H 141 -1 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.06 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.08 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.12 SSBOND 4 CYS H 191 CYS H 220 1555 1555 1.98 LINK C3 0G6 H 1 NE2 HIS H 57 1555 1555 1.49 LINK C2 0G6 H 1 OG SER H 195 1555 1555 1.53 LINK ND2 ASN H 60G C1 NAG H 400 1555 1555 1.43 CISPEP 1 SER H 36A PRO H 37 0 -2.90 CRYST1 70.970 72.500 72.570 90.00 100.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014090 0.000000 0.002612 0.00000 SCALE2 0.000000 0.013793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014014 0.00000