HEADER GENE REGULATION 20-APR-01 1HBX TITLE TERNARY COMPLEX OF SAP-1 AND SRF WITH SPECIFIC SRE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERUM RESPONSE FACTOR; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: CORE RESIDUES 132-223; COMPND 5 SYNONYM: SRF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*AP*TP*GP*GP*CP*CP*TP*AP*AP*TP*TP*AP* COMPND 9 GP*GP*AP*CP*TP*TP*CP*CP*GP*GP*TP*G)-3'; COMPND 10 CHAIN: C, F; COMPND 11 FRAGMENT: SRE SPECIFIC DNA; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ETS-DOMAIN PROTEIN ELK-4; COMPND 15 CHAIN: G, H; COMPND 16 FRAGMENT: RESIDUES 2-156; COMPND 17 SYNONYM: SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1, SAP-1; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: 5'-D(*CP*AP*CP*AP*CP*CP*GP*GP*AP*AP*GP*TP*CP* COMPND 21 CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*CP*AP*T)-3'; COMPND 22 CHAIN: W, X; COMPND 23 FRAGMENT: SRE SPECIFIC DNA; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRF (132-223); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 11 EXPRESSION_SYSTEM_GENE: SRF CORE (132-223); SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: SAP-1 (1-156); SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 25 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 27 EXPRESSION_SYSTEM_GENE: SAP-1 (1-156); SOURCE 28 MOL_ID: 4; SOURCE 29 SYNTHETIC: YES; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606 KEYWDS GENE REGULATION, TRANSCRIPTION COMPLEX, SERUM RESPONSE FACTOR, KEYWDS 2 TERNARY COMPLEX FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.HASSLER,T.J.RICHMOND REVDAT 3 13-DEC-23 1HBX 1 REMARK REVDAT 2 24-FEB-09 1HBX 1 VERSN REVDAT 1 27-JUN-01 1HBX 0 JRNL AUTH M.HASSLER,T.J.RICHMOND JRNL TITL THE B-BOX DOMINATES SAP-1/SRF INTERACTIONS IN THE STRUCTURE JRNL TITL 2 OF THE TERNARY COMPLEX JRNL REF EMBO J. V. 20 3018 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11406578 JRNL DOI 10.1093/EMBOJ/20.12.3018 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2735 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4020 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 450 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4562 REMARK 3 NUCLEIC ACID ATOMS : 2120 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.86000 REMARK 3 B22 (A**2) : -3.85000 REMARK 3 B33 (A**2) : -4.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 44.37 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED ALSO WITH REFMAC BY MURSHUDOV, REMARK 3 VAGIN, DODSON REMARK 4 REMARK 4 1HBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-01. REMARK 100 THE DEPOSITION ID IS D_1290006022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 103.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31747 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 51.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, CNS REMARK 200 STARTING MODEL: 1SRS, 1BC7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500, NH4NO3, BIS-TRIS BUFFER, REMARK 280 DTT, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 71.34000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: COMPLEX OF HOMODIMERIC SERUM RESPONSE FACTOR REMARK 300 , THEETS-DOMAIN PROTEIN ELK-4 AND THE DOUBLE REMARK 300 STRANDED DNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, H, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 ALA A 134 REMARK 465 LYS A 135 REMARK 465 PRO A 136 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 ALA B 134 REMARK 465 LYS B 135 REMARK 465 PRO B 136 REMARK 465 GLY B 137 REMARK 465 SER D 132 REMARK 465 GLY D 133 REMARK 465 ALA D 134 REMARK 465 LYS D 135 REMARK 465 PRO D 136 REMARK 465 GLY D 137 REMARK 465 SER E 132 REMARK 465 GLY E 133 REMARK 465 ALA E 134 REMARK 465 GLY G 0 REMARK 465 SER G 1 REMARK 465 ASP G 94 REMARK 465 PRO G 95 REMARK 465 MET G 96 REMARK 465 THR G 97 REMARK 465 VAL G 98 REMARK 465 GLY G 99 REMARK 465 ARG G 100 REMARK 465 ILE G 101 REMARK 465 GLU G 102 REMARK 465 GLY G 103 REMARK 465 ASP G 104 REMARK 465 CYS G 105 REMARK 465 GLU G 106 REMARK 465 SER G 107 REMARK 465 LEU G 108 REMARK 465 ASN G 109 REMARK 465 PHE G 110 REMARK 465 SER G 111 REMARK 465 GLU G 112 REMARK 465 VAL G 113 REMARK 465 SER G 114 REMARK 465 SER G 115 REMARK 465 SER G 116 REMARK 465 SER G 117 REMARK 465 LYS G 118 REMARK 465 ASP G 119 REMARK 465 VAL G 120 REMARK 465 GLU G 121 REMARK 465 ASN G 122 REMARK 465 GLY G 123 REMARK 465 GLY G 124 REMARK 465 LYS G 125 REMARK 465 ASP G 126 REMARK 465 LYS G 127 REMARK 465 PRO G 128 REMARK 465 PRO G 129 REMARK 465 GLN G 130 REMARK 465 PRO G 131 REMARK 465 GLY G 132 REMARK 465 ALA G 133 REMARK 465 LYS G 134 REMARK 465 THR G 135 REMARK 465 SER G 136 REMARK 465 GLY H 0 REMARK 465 SER H 1 REMARK 465 ASP H 2 REMARK 465 ASP H 94 REMARK 465 PRO H 95 REMARK 465 MET H 96 REMARK 465 THR H 97 REMARK 465 VAL H 98 REMARK 465 GLY H 99 REMARK 465 ARG H 100 REMARK 465 ILE H 101 REMARK 465 GLU H 102 REMARK 465 GLY H 103 REMARK 465 ASP H 104 REMARK 465 CYS H 105 REMARK 465 GLU H 106 REMARK 465 SER H 107 REMARK 465 LEU H 108 REMARK 465 ASN H 109 REMARK 465 PHE H 110 REMARK 465 SER H 111 REMARK 465 GLU H 112 REMARK 465 VAL H 113 REMARK 465 SER H 114 REMARK 465 SER H 115 REMARK 465 SER H 116 REMARK 465 SER H 117 REMARK 465 LYS H 118 REMARK 465 ASP H 119 REMARK 465 VAL H 120 REMARK 465 GLU H 121 REMARK 465 ASN H 122 REMARK 465 GLY H 123 REMARK 465 GLY H 124 REMARK 465 LYS H 125 REMARK 465 ASP H 126 REMARK 465 LYS H 127 REMARK 465 PRO H 128 REMARK 465 PRO H 129 REMARK 465 GLN H 130 REMARK 465 PRO H 131 REMARK 465 GLY H 132 REMARK 465 ALA H 133 REMARK 465 LYS H 134 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 LEU H 155 REMARK 465 ASN H 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS D 138 CG CD CE NZ REMARK 470 LYS D 139 CG CD CE NZ REMARK 470 LYS E 135 CG CD CE NZ REMARK 470 LYS E 138 CB CG CD CE NZ REMARK 470 LYS E 139 CB CG CD CE NZ REMARK 470 ASP G 2 CG OD1 OD2 REMARK 470 SER G 3 OG REMARK 470 ILE G 5 CG1 CG2 CD1 REMARK 470 LEU G 14 CG CD1 CD2 REMARK 470 ILE G 47 CG1 CG2 CD1 REMARK 470 ASP G 57 CG OD1 OD2 REMARK 470 VAL G 81 CG1 CG2 REMARK 470 LYS H 73 CG CD CE NZ REMARK 470 GLN H 78 CB CG CD OE1 NE2 REMARK 470 LYS H 79 CG CD CE NZ REMARK 470 SER H 137 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA W -8 N9 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 DG W 5 C5' - C4' - C3' ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 141 -11.23 -49.69 REMARK 500 MET A 148 57.32 -69.73 REMARK 500 ASN A 153 94.31 -61.78 REMARK 500 TYR A 173 -73.35 -65.17 REMARK 500 GLU A 190 3.76 -64.44 REMARK 500 ARG A 200 -75.31 -34.20 REMARK 500 PRO A 204 -37.08 -34.76 REMARK 500 SER A 208 161.57 -40.27 REMARK 500 LYS B 139 -65.10 -95.81 REMARK 500 ARG B 143 114.45 -24.08 REMARK 500 ASN B 153 84.33 -160.72 REMARK 500 LYS B 154 -44.97 -24.36 REMARK 500 THR B 210 -73.92 -54.64 REMARK 500 PHE D 150 127.75 -38.34 REMARK 500 ASN D 153 106.22 -50.99 REMARK 500 ARG D 200 -74.85 -50.25 REMARK 500 LYS D 201 -38.20 -38.70 REMARK 500 LYS D 212 -53.32 -29.03 REMARK 500 CYS D 218 -71.92 -63.02 REMARK 500 ARG E 156 -72.45 -50.33 REMARK 500 ARG E 157 -74.44 -26.93 REMARK 500 LYS E 163 -72.37 -49.92 REMARK 500 THR E 191 -81.37 -45.35 REMARK 500 ARG E 200 -78.63 -32.38 REMARK 500 SER G 3 -94.65 -53.43 REMARK 500 LEU G 7 -74.35 -39.15 REMARK 500 LEU G 11 44.73 -73.67 REMARK 500 LEU G 12 8.21 -156.55 REMARK 500 GLN G 16 14.95 -140.61 REMARK 500 GLN G 19 -63.21 -27.07 REMARK 500 ASN G 20 50.58 -99.90 REMARK 500 TRP G 26 -158.78 -80.66 REMARK 500 THR G 27 132.61 176.46 REMARK 500 SER G 28 -174.72 63.58 REMARK 500 GLN G 32 159.22 -46.15 REMARK 500 GLN G 37 77.95 -113.70 REMARK 500 ALA G 38 -75.90 -52.89 REMARK 500 GLU G 39 -31.32 -31.92 REMARK 500 ASN G 50 53.27 10.71 REMARK 500 LYS G 51 64.53 -112.00 REMARK 500 PRO G 52 -3.62 -56.36 REMARK 500 ASN G 55 164.87 176.46 REMARK 500 LYS G 58 -71.38 -99.04 REMARK 500 TYR G 66 -32.96 -36.14 REMARK 500 GLN G 78 70.37 -17.00 REMARK 500 PHE G 80 10.71 80.80 REMARK 500 TYR G 82 -158.94 -112.61 REMARK 500 LYS G 83 142.52 -176.47 REMARK 500 ILE G 90 37.81 -70.19 REMARK 500 ASN G 139 31.77 -80.89 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C -6 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BC7 RELATED DB: PDB REMARK 900 STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 ANDC-FOS REMARK 900 PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINSDISCRIMINATE REMARK 900 BETWEEN RELATED DNA TARGETS REMARK 900 RELATED ID: 1BC8 RELATED DB: PDB REMARK 900 STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 ANDC-FOS REMARK 900 PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINSDISCRIMINATE REMARK 900 BETWEEN RELATED DNA TARGETS REMARK 900 RELATED ID: 1SRS RELATED DB: PDB REMARK 900 SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE REMARK 900 DEOXYRIBONUCLEIC ACID DBREF 1HBX A 132 223 UNP P11831 SRF_HUMAN 132 223 DBREF 1HBX B 132 223 UNP P11831 SRF_HUMAN 132 223 DBREF 1HBX G 0 1 PDB 1HBX 1HBX 0 1 DBREF 1HBX G 2 156 UNP P28324 ELK4_HUMAN 2 156 DBREF 1HBX W -17 9 PDB 1HBX 1HBX -17 9 DBREF 1HBX C 10 -16 PDB 1HBX 1HBX 10 -16 DBREF 1HBX D 132 223 UNP P11831 SRF_HUMAN 132 223 DBREF 1HBX E 132 223 UNP P11831 SRF_HUMAN 132 223 DBREF 1HBX H 0 1 PDB 1HBX 1HBX 0 1 DBREF 1HBX H 2 156 UNP P28324 ELK4_HUMAN 2 156 DBREF 1HBX X -17 9 PDB 1HBX 1HBX -17 9 DBREF 1HBX F 10 -16 PDB 1HBX 1HBX 10 -16 SEQRES 1 A 92 SER GLY ALA LYS PRO GLY LYS LYS THR ARG GLY ARG VAL SEQRES 2 A 92 LYS ILE LYS MET GLU PHE ILE ASP ASN LYS LEU ARG ARG SEQRES 3 A 92 TYR THR THR PHE SER LYS ARG LYS THR GLY ILE MET LYS SEQRES 4 A 92 LYS ALA TYR GLU LEU SER THR LEU THR GLY THR GLN VAL SEQRES 5 A 92 LEU LEU LEU VAL ALA SER GLU THR GLY HIS VAL TYR THR SEQRES 6 A 92 PHE ALA THR ARG LYS LEU GLN PRO MET ILE THR SER GLU SEQRES 7 A 92 THR GLY LYS ALA LEU ILE GLN THR CYS LEU ASN SER PRO SEQRES 8 A 92 ASP SEQRES 1 B 92 SER GLY ALA LYS PRO GLY LYS LYS THR ARG GLY ARG VAL SEQRES 2 B 92 LYS ILE LYS MET GLU PHE ILE ASP ASN LYS LEU ARG ARG SEQRES 3 B 92 TYR THR THR PHE SER LYS ARG LYS THR GLY ILE MET LYS SEQRES 4 B 92 LYS ALA TYR GLU LEU SER THR LEU THR GLY THR GLN VAL SEQRES 5 B 92 LEU LEU LEU VAL ALA SER GLU THR GLY HIS VAL TYR THR SEQRES 6 B 92 PHE ALA THR ARG LYS LEU GLN PRO MET ILE THR SER GLU SEQRES 7 B 92 THR GLY LYS ALA LEU ILE GLN THR CYS LEU ASN SER PRO SEQRES 8 B 92 ASP SEQRES 1 C 26 DG DA DT DG DG DC DC DT DA DA DT DT DA SEQRES 2 C 26 DG DG DA DC DT DT DC DC DG DG DT DG DT SEQRES 1 D 92 SER GLY ALA LYS PRO GLY LYS LYS THR ARG GLY ARG VAL SEQRES 2 D 92 LYS ILE LYS MET GLU PHE ILE ASP ASN LYS LEU ARG ARG SEQRES 3 D 92 TYR THR THR PHE SER LYS ARG LYS THR GLY ILE MET LYS SEQRES 4 D 92 LYS ALA TYR GLU LEU SER THR LEU THR GLY THR GLN VAL SEQRES 5 D 92 LEU LEU LEU VAL ALA SER GLU THR GLY HIS VAL TYR THR SEQRES 6 D 92 PHE ALA THR ARG LYS LEU GLN PRO MET ILE THR SER GLU SEQRES 7 D 92 THR GLY LYS ALA LEU ILE GLN THR CYS LEU ASN SER PRO SEQRES 8 D 92 ASP SEQRES 1 E 92 SER GLY ALA LYS PRO GLY LYS LYS THR ARG GLY ARG VAL SEQRES 2 E 92 LYS ILE LYS MET GLU PHE ILE ASP ASN LYS LEU ARG ARG SEQRES 3 E 92 TYR THR THR PHE SER LYS ARG LYS THR GLY ILE MET LYS SEQRES 4 E 92 LYS ALA TYR GLU LEU SER THR LEU THR GLY THR GLN VAL SEQRES 5 E 92 LEU LEU LEU VAL ALA SER GLU THR GLY HIS VAL TYR THR SEQRES 6 E 92 PHE ALA THR ARG LYS LEU GLN PRO MET ILE THR SER GLU SEQRES 7 E 92 THR GLY LYS ALA LEU ILE GLN THR CYS LEU ASN SER PRO SEQRES 8 E 92 ASP SEQRES 1 F 26 DG DA DT DG DG DC DC DT DA DA DT DT DA SEQRES 2 F 26 DG DG DA DC DT DT DC DC DG DG DT DG DT SEQRES 1 G 157 GLY SER ASP SER ALA ILE THR LEU TRP GLN PHE LEU LEU SEQRES 2 G 157 GLN LEU LEU GLN LYS PRO GLN ASN LYS HIS MET ILE CYS SEQRES 3 G 157 TRP THR SER ASN ASP GLY GLN PHE LYS LEU LEU GLN ALA SEQRES 4 G 157 GLU GLU VAL ALA ARG LEU TRP GLY ILE ARG LYS ASN LYS SEQRES 5 G 157 PRO ASN MET ASN TYR ASP LYS LEU SER ARG ALA LEU ARG SEQRES 6 G 157 TYR TYR TYR VAL LYS ASN ILE ILE LYS LYS VAL ASN GLY SEQRES 7 G 157 GLN LYS PHE VAL TYR LYS PHE VAL SER TYR PRO GLU ILE SEQRES 8 G 157 LEU ASN MET ASP PRO MET THR VAL GLY ARG ILE GLU GLY SEQRES 9 G 157 ASP CYS GLU SER LEU ASN PHE SER GLU VAL SER SER SER SEQRES 10 G 157 SER LYS ASP VAL GLU ASN GLY GLY LYS ASP LYS PRO PRO SEQRES 11 G 157 GLN PRO GLY ALA LYS THR SER SER ARG ASN ASP TYR ILE SEQRES 12 G 157 HIS SER GLY LEU TYR SER SER PHE THR LEU ASN SER LEU SEQRES 13 G 157 ASN SEQRES 1 H 157 GLY SER ASP SER ALA ILE THR LEU TRP GLN PHE LEU LEU SEQRES 2 H 157 GLN LEU LEU GLN LYS PRO GLN ASN LYS HIS MET ILE CYS SEQRES 3 H 157 TRP THR SER ASN ASP GLY GLN PHE LYS LEU LEU GLN ALA SEQRES 4 H 157 GLU GLU VAL ALA ARG LEU TRP GLY ILE ARG LYS ASN LYS SEQRES 5 H 157 PRO ASN MET ASN TYR ASP LYS LEU SER ARG ALA LEU ARG SEQRES 6 H 157 TYR TYR TYR VAL LYS ASN ILE ILE LYS LYS VAL ASN GLY SEQRES 7 H 157 GLN LYS PHE VAL TYR LYS PHE VAL SER TYR PRO GLU ILE SEQRES 8 H 157 LEU ASN MET ASP PRO MET THR VAL GLY ARG ILE GLU GLY SEQRES 9 H 157 ASP CYS GLU SER LEU ASN PHE SER GLU VAL SER SER SER SEQRES 10 H 157 SER LYS ASP VAL GLU ASN GLY GLY LYS ASP LYS PRO PRO SEQRES 11 H 157 GLN PRO GLY ALA LYS THR SER SER ARG ASN ASP TYR ILE SEQRES 12 H 157 HIS SER GLY LEU TYR SER SER PHE THR LEU ASN SER LEU SEQRES 13 H 157 ASN SEQRES 1 W 26 DC DA DC DA DC DC DG DG DA DA DG DT DC SEQRES 2 W 26 DC DT DA DA DT DT DA DG DG DC DC DA DT SEQRES 1 X 26 DC DA DC DA DC DC DG DG DA DA DG DT DC SEQRES 2 X 26 DC DT DA DA DT DT DA DG DG DC DC DA DT HELIX 1 HA1 ASN A 153 THR A 179 1 27 HELIX 2 HA2 SER A 208 ASN A 220 1 13 HELIX 3 HB1 ASN B 153 THR B 179 1 27 HELIX 4 HB2 SER B 208 ASN B 220 1 13 HELIX 5 HD1 ASN D 153 THR D 179 1 27 HELIX 6 HD2 SER D 208 ASN D 220 1 13 HELIX 7 HE1 ASN E 153 THR E 179 1 27 HELIX 8 HE2 SER E 208 ASN E 220 1 13 HELIX 9 HG1 THR G 6 LEU G 11 1 6 HELIX 10 3G1 PRO G 18 ASN G 20 5 3 HELIX 11 HG2 ALA G 38 ARG G 48 1 11 HELIX 12 HG3 ASN G 55 LYS G 69 1 15 HELIX 13 3G2 PRO G 88 LEU G 91 5 4 HELIX 14 3G3 ASN G 139 SER G 144 5 6 HELIX 15 3G4 ASN G 153 ASN G 156 5 4 HELIX 16 HH1 LEU H 7 LEU H 15 1 9 HELIX 17 3H1 PRO H 18 ASN H 20 5 3 HELIX 18 HH2 ALA H 38 LYS H 49 1 12 HELIX 19 HH3 ASN H 55 LYS H 69 1 15 HELIX 20 3H2 PRO H 88 LEU H 91 5 4 HELIX 21 3H3 ASN H 139 SER H 144 5 6 SHEET 1 S1 5 VAL A 194 ALA A 198 0 SHEET 2 S1 5 GLN A 182 ALA A 188 -1 O LEU A 185 N PHE A 197 SHEET 3 S1 5 GLN B 182 ALA B 188 -1 O GLN B 182 N ALA A 188 SHEET 4 S1 5 HIS B 193 ALA B 198 -1 O TYR B 195 N VAL B 187 SHEET 5 S1 5 LEU G 146 THR G 151 -1 O SER G 148 N THR B 196 SHEET 1 S2 5 VAL D 194 ALA D 198 0 SHEET 2 S2 5 GLN D 182 ALA D 188 -1 O LEU D 185 N PHE D 197 SHEET 3 S2 5 GLN E 182 ALA E 188 -1 O GLN E 182 N ALA D 188 SHEET 4 S2 5 VAL E 194 ALA E 198 -1 O TYR E 195 N VAL E 187 SHEET 5 S2 5 LEU H 146 THR H 151 -1 O SER H 148 N THR E 196 SHEET 1 S3 4 ILE G 24 TRP G 26 0 SHEET 2 S3 4 PHE G 33 LEU G 35 -1 O LYS G 34 N CYS G 25 SHEET 3 S3 4 VAL G 81 PHE G 84 -1 O TYR G 82 N PHE G 33 SHEET 4 S3 4 ILE G 72 LYS G 74 -1 O LYS G 73 N LYS G 83 SHEET 1 S4 4 ILE H 24 CYS H 25 0 SHEET 2 S4 4 GLN H 32 LEU H 35 -1 SHEET 3 S4 4 VAL H 81 PHE H 84 -1 O TYR H 82 N PHE H 33 SHEET 4 S4 4 ILE H 72 LYS H 74 -1 O LYS H 73 N LYS H 83 CISPEP 1 TYR G 87 PRO G 88 0 1.77 CISPEP 2 TYR H 87 PRO H 88 0 -3.73 CRYST1 142.680 144.390 75.930 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013170 0.00000