HEADER OXIDOREDUCTASE 24-APR-01 1HBZ TITLE CATALASE FROM MICROCOCCUS LYSODEIKTICU COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROCOCCUS LYSODEIKTICUS; SOURCE 3 ORGANISM_TAXID: 1270 KEYWDS OXIDOREDUCTASE, PEROXIDASE, IRON, HEME HYDROGEN PEROXIDE EXPDTA X-RAY DIFFRACTION AUTHOR G.N.MURSHUDOV,A.I.GREBENKO,V.V.BARYNIN,J.BRANINGEN,K.S.WILSON, AUTHOR 2 Z.DAUTER,W.R.MELIK-ADAMYAN REVDAT 4 24-JUL-19 1HBZ 1 REMARK REVDAT 3 24-FEB-09 1HBZ 1 VERSN REVDAT 2 16-AUG-01 1HBZ 1 HETATM ANISOU REVDAT 1 24-MAY-01 1HBZ 0 JRNL AUTH G.N.MURSHUDOV,W.R.MELIK-ADAMYAN,A.I.GREBENKO,V.V.BARYNIN, JRNL AUTH 2 A.A.VAGIN,B.K.VAINSHTEIN,Z.DAUTER,K.S.WILSON JRNL TITL THREE-DIMENSIONAL STRUCTURE OF CATALASE FROM MICROCOCCUS JRNL TITL 2 LYSODEIKTICUS AT 1.5A RESOLUTION JRNL REF FEBS LETT. V. 312 127 1992 JRNL REFN ISSN 0014-5793 JRNL PMID 1426241 JRNL DOI 10.1016/0014-5793(92)80919-8 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0.36 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 90574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.092 REMARK 3 FREE R VALUE : 0.120 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1090 REMARK 3 BIN FREE R VALUE SET COUNT : 354 REMARK 3 BIN FREE R VALUE : 0.1530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.988 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.981 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4220 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3593 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 5754 ; 1.702 ; 1.950 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 8359 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4802 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 910 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 736 ; 0.254 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3345 ; 0.189 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 375 ; 0.189 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.327 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 135 ; 0.178 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.157 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2492 ; 1.848 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4027 ; 2.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 3.596 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1727 ; 5.332 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1HBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-01. REMARK 100 THE DEPOSITION ID IS D_1290008004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 358628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.501 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.12500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.12500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.12500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.12500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2063 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 STRUCTURE WAS SOLVED IN THE ABSENCE OF CHEMICAL SEQUENCE. REMARK 400 PROTECT CELLS FROM THE TOXIC EFFECTS OF HYDROGEN PEROXIDE REMARK 400 BY BREAKING DOWN HYDROGEN PEROXIDE IN WATER AND OXYGEN. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2382 O HOH A 2393 2.05 REMARK 500 OD1 ASP A 169 NH2 ARG A 464 2.07 REMARK 500 O HOH A 2001 O HOH A 2011 2.10 REMARK 500 NZ LYS A 364 O HOH A 2352 2.12 REMARK 500 OD2 ASP A 379 O HOH A 2375 2.13 REMARK 500 OD1 ASN A 173 NH2 ARG A 464 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 295 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 410 CB - CG - OD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 415 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 464 CG - CD - NE ANGL. DEV. = 20.7 DEGREES REMARK 500 ARG A 464 CD - NE - CZ ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 464 NE - CZ - NH1 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 464 NE - CZ - NH2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 22 -52.37 75.14 REMARK 500 HIS A 61 34.36 74.63 REMARK 500 LYS A 154 -130.03 -102.22 REMARK 500 SER A 202 -63.44 72.80 REMARK 500 PRO A 332 5.98 -63.90 REMARK 500 GLU A 373 -160.10 65.16 REMARK 500 ASP A 398 50.96 -157.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 504 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 343 OH REMARK 620 2 HEM A 504 NA 97.0 REMARK 620 3 HEM A 504 NB 95.2 89.4 REMARK 620 4 HEM A 504 NC 88.9 174.1 89.2 REMARK 620 5 HEM A 504 ND 92.2 89.6 172.6 91.0 REMARK 620 6 HOH A2534 O 169.5 92.5 89.4 81.7 83.3 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "A" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 504 DBREF 1HBZ A 6 503 PDB 1HBZ 1HBZ 6 503 SEQRES 1 A 498 THR THR PRO HIS ALA THR GLY SER THR ARG GLN ASN GLY SEQRES 2 A 498 ALA PRO ALA VAL SER ASP ARG GLN SER LEU THR VAL GLY SEQRES 3 A 498 SER GLU GLY PRO ILE VAL LEU HIS ASP THR HIS LEU LEU SEQRES 4 A 498 GLU THR HIS GLN HIS PHE ASN ARG MET ASN ILE PRO GLU SEQRES 5 A 498 ARG ARG PRO HIS ALA LYS GLY SER GLY ALA PHE GLY GLU SEQRES 6 A 498 PHE GLU VAL THR GLU ASP VAL SER LYS TYR THR LYS ALA SEQRES 7 A 498 LEU VAL PHE GLN PRO GLY THR LYS THR GLU THR LEU LEU SEQRES 8 A 498 ARG PHE SER THR VAL ALA GLY GLU LEU GLY SER PRO ASP SEQRES 9 A 498 THR TRP ARG ASP VAL ARG GLY PHE ALA LEU ARG PHE TYR SEQRES 10 A 498 THR GLU GLU GLY ASN TYR ASP LEU VAL GLY ASN ASN THR SEQRES 11 A 498 PRO ILE PHE PHE LEU ARG ASP PRO MET LYS PHE THR HIS SEQRES 12 A 498 PHE ILE ARG SER GLN LYS ARG LEU PRO ASP SER GLY LEU SEQRES 13 A 498 ARG ASP ALA THR MET GLN TRP ASP PHE TRP THR ASN ASN SEQRES 14 A 498 PRO GLU SER ALA HIS GLN VAL THR TYR LEU MET GLY PRO SEQRES 15 A 498 ARG GLY LEU PRO ARG THR TRP ARG GLU MET ASN GLY TYR SEQRES 16 A 498 GLY SER HIS THR TYR LEU TRP VAL ASN ALA GLN GLY GLU SEQRES 17 A 498 LYS HIS TRP VAL LYS TYR HIS PHE ILE SER GLN GLN GLY SEQRES 18 A 498 VAL HIS ASN LEU SER ASN ASP GLU ALA THR LYS ILE ALA SEQRES 19 A 498 GLY GLU ASN ALA ASP PHE HIS ARG GLN ASP LEU PHE GLU SEQRES 20 A 498 SER ILE ALA LYS GLY ASP HIS PRO LYS TRP ASP LEU TYR SEQRES 21 A 498 ILE GLN ALA ILE PRO TYR GLU GLU GLY LYS THR TYR ARG SEQRES 22 A 498 PHE ASN PRO PHE ASP LEU THR LYS THR ILE SER GLN LYS SEQRES 23 A 498 ASP TYR PRO ARG ILE LYS VAL GLY THR LEU THR LEU ASN SEQRES 24 A 498 ARG ASN PRO LYS ASN HIS PHE ALA GLN ILE GLU SER ALA SEQRES 25 A 498 ALA PHE SER PRO SER ASN THR VAL PRO GLY ILE GLY LEU SEQRES 26 A 498 SER PRO ASP ARG MET LEU LEU GLY ARG ALA PHE ALA TYR SEQRES 27 A 498 HIS ASP ALA GLN LEU TYR ARG VAL GLY ALA HIS VAL ASN SEQRES 28 A 498 GLN LEU PRO VAL ASN ARG PRO LYS ASN ALA VAL HIS ASN SEQRES 29 A 498 TYR ALA PHE GLU GLY GLN MET TRP TYR ASP HIS THR GLY SEQRES 30 A 498 ASP ARG SER THR TYR VAL PRO ASN SER ASN GLY ASP SER SEQRES 31 A 498 TRP SER ASP GLU THR GLY PRO VAL ASP ASP GLY TRP GLU SEQRES 32 A 498 ALA ASP GLY THR LEU THR ARG GLU ALA GLN ALA LEU ARG SEQRES 33 A 498 ALA ASP ASP ASP ASP PHE GLY GLN ALA GLY THR LEU VAL SEQRES 34 A 498 ARG GLU VAL PHE SER ASP GLN GLU ARG ASP ASP PHE VAL SEQRES 35 A 498 GLU THR VAL ALA GLY ALA LEU LYS GLY VAL ARG GLN ASP SEQRES 36 A 498 VAL GLN ALA ARG ALA PHE GLU TYR TRP LYS ASN VAL ASP SEQRES 37 A 498 ALA THR ILE GLY GLN ARG ILE GLU ASP GLU VAL LYS ARG SEQRES 38 A 498 HIS GLU GLY ASP GLY ILE PRO GLY VAL GLU ALA GLY GLY SEQRES 39 A 498 GLU ALA ARG ILE HET HEM A 504 43 HET SO4 A 505 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *538(H2 O) HELIX 1 1 ASP A 40 ASN A 51 1 12 HELIX 2 2 ALA A 83 GLN A 87 5 5 HELIX 3 3 ASP A 142 MET A 144 5 3 HELIX 4 4 LYS A 145 LYS A 154 1 10 HELIX 5 5 ASP A 163 ASN A 173 1 11 HELIX 6 6 ASN A 174 GLU A 176 5 3 HELIX 7 7 SER A 177 GLY A 186 1 10 HELIX 8 8 PRO A 187 LEU A 190 5 4 HELIX 9 9 THR A 193 MET A 197 5 5 HELIX 10 10 SER A 231 ASN A 242 1 12 HELIX 11 11 ASP A 244 LYS A 256 1 13 HELIX 12 12 PRO A 270 TYR A 277 1 8 HELIX 13 13 ASN A 309 ILE A 314 1 6 HELIX 14 14 ASP A 333 VAL A 351 1 19 HELIX 15 15 HIS A 354 LEU A 358 5 5 HELIX 16 16 LEU A 358 ARG A 362 5 5 HELIX 17 17 PHE A 427 VAL A 437 1 11 HELIX 18 18 SER A 439 LEU A 454 1 16 HELIX 19 19 ARG A 458 ASP A 473 1 16 HELIX 20 20 ASP A 473 ARG A 486 1 14 SHEET 1 AA 9 GLY A 64 VAL A 73 0 SHEET 2 AA 9 LYS A 91 SER A 99 -1 O THR A 92 N PHE A 71 SHEET 3 AA 9 GLY A 116 THR A 123 -1 O GLY A 116 N SER A 99 SHEET 4 AA 9 GLY A 126 ASN A 133 -1 O GLY A 126 N THR A 123 SHEET 5 AA 9 GLY A 199 TYR A 200 -1 O TYR A 200 N ASN A 133 SHEET 6 AA 9 TYR A 219 SER A 223 -1 O PHE A 221 N GLY A 199 SHEET 7 AA 9 LYS A 261 ILE A 266 -1 O ASP A 263 N ILE A 222 SHEET 8 AA 9 ILE A 296 ARG A 305 -1 O ILE A 296 N ILE A 266 SHEET 9 AA 9 GLY A 64 VAL A 73 -1 O PHE A 68 N ASN A 304 SHEET 1 AB 3 LYS A 214 HIS A 215 0 SHEET 2 AB 3 LEU A 206 VAL A 208 -1 O TRP A 207 N HIS A 215 SHEET 3 AB 3 ILE A 328 GLY A 329 -1 O GLY A 329 N LEU A 206 LINK OH TYR A 343 FE HEM A 504 1555 1555 1.90 LINK FE HEM A 504 O HOH A2534 1555 1555 2.40 CISPEP 1 ARG A 59 PRO A 60 0 -9.90 CISPEP 2 VAL A 388 PRO A 389 0 -14.29 SITE 1 AC1 8 ARG A 188 ASN A 198 TYR A 200 ARG A 295 SITE 2 AC1 8 HOH A2535 HOH A2536 HOH A2537 HOH A2538 SITE 1 AC2 25 HIS A 47 ASN A 51 ARG A 58 ARG A 59 SITE 2 AC2 25 HIS A 61 ARG A 97 GLY A 116 VAL A 131 SITE 3 AC2 25 GLY A 132 ASN A 133 PRO A 143 PHE A 146 SITE 4 AC2 25 GLY A 201 SER A 202 LEU A 284 PHE A 319 SITE 5 AC2 25 MET A 335 ARG A 339 TYR A 343 GLN A 347 SITE 6 AC2 25 ARG A 350 HOH A2110 HOH A2532 HOH A2533 SITE 7 AC2 25 HOH A2534 CRYST1 106.700 106.700 106.250 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009412 0.00000