HEADER HYDROLASE 25-APR-01 1HC0 TITLE STRUCTURE OF LYSOZYME WITH PERIODATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D 4, GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS HYDROLASE, GLYCOSIDASE, BACTERIOLYTIC ENZYME EXPDTA X-RAY DIFFRACTION NUMMDL 10 AUTHOR J.ONDRACEK,F.JURSIK,J.BRYNDA,P.REZACOVA,J.SEDLACEK REVDAT 5 28-JUN-17 1HC0 1 REMARK REVDAT 4 14-DEC-16 1HC0 1 REMARK REVDAT 3 19-FEB-14 1HC0 1 NUMMDL REMARK VERSN FORMUL REVDAT 3 2 1 SSBOND REVDAT 2 24-FEB-09 1HC0 1 VERSN REVDAT 1 14-NOV-05 1HC0 0 JRNL AUTH J.ONDRACEK,M.S.WEISS,J.BRYNDA,J.FIALA,F.JURSIK,P.REZACOVA, JRNL AUTH 2 L.B.JENNER,J.SEDLACEK JRNL TITL REGULAR ARRANGEMENT OF PERIODATES BOUND TO LYSOZYME. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 1181 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 16131750 JRNL DOI 10.1107/S090744490501543X REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 CROSS-VALIDATION METHOD : FREE R HHSR MODIFICATION REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.160 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 10310 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.157 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.154 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 968 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 9837 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 994 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1166.1 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 3 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 4966 REMARK 3 NUMBER OF RESTRAINTS : 4268 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-01. REMARK 100 THE DEPOSITION ID IS D_1290006138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 150.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL1998 REMARK 200 DATA SCALING SOFTWARE : HKL V. 1998 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06230 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 20.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SOAKED AT PERIODATE, PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.77750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.88250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.88250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.16625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.88250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.88250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.38875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.88250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.88250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.16625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.88250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.88250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.38875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.77750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1109 LIES ON A SPECIAL POSITION. REMARK 375 HOH A8131 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 1 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 1 LEU A 129 O REMARK 470 2 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 2 LEU A 129 O REMARK 470 3 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 3 LEU A 129 O REMARK 470 4 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 4 LEU A 129 O REMARK 470 5 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 5 LEU A 129 O REMARK 470 6 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 6 LEU A 129 O REMARK 470 7 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 7 LEU A 129 O REMARK 470 8 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 8 LEU A 129 O REMARK 470 9 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 9 LEU A 129 O REMARK 470 10 ARG A 73 CD NE CZ NH1 NH2 REMARK 470 10 LEU A 129 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 I IOD A 133 O HOH A 5134 1.56 REMARK 500 I IOD A 133 O HOH A 5135 1.66 REMARK 500 I IOD A 133 O HOH A 5132 1.68 REMARK 500 I IOD A 138 O HOH A 2131 1.71 REMARK 500 I IOD A 134 O HOH A 6131 1.84 REMARK 500 I IOD A 133 O HOH A 5133 1.92 REMARK 500 I IOD A 134 O HOH A 6135 1.93 REMARK 500 I IOD A 134 O HOH A 6136 1.99 REMARK 500 I IOD A 133 O HOH A 5131 2.03 REMARK 500 O HOH A 5134 O HOH A 5135 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1010 O HOH A 1011 7556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 125 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 3 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 4 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 5 ARG A 21 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 5 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 125 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 36 -0.79 -141.51 REMARK 500 1 ASN A 74 58.63 39.20 REMARK 500 2 SER A 36 -0.61 -142.59 REMARK 500 2 ASN A 74 60.65 39.68 REMARK 500 3 SER A 36 -0.38 -143.68 REMARK 500 4 SER A 36 -2.41 -142.66 REMARK 500 5 SER A 36 -0.59 -143.63 REMARK 500 5 ASN A 74 58.83 38.47 REMARK 500 6 SER A 36 -1.78 -144.12 REMARK 500 6 ASN A 74 60.69 36.57 REMARK 500 7 SER A 36 -1.43 -142.37 REMARK 500 7 ASN A 74 59.47 39.34 REMARK 500 8 SER A 36 -2.95 -143.23 REMARK 500 8 ARG A 68 22.98 -141.53 REMARK 500 8 ASN A 74 62.73 39.18 REMARK 500 9 SER A 36 -1.82 -142.91 REMARK 500 9 ASN A 74 59.88 39.65 REMARK 500 10 SER A 36 -1.84 -144.80 REMARK 500 10 ARG A 68 21.53 -141.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ASP A 18 0.07 SIDE CHAIN REMARK 500 6 ASP A 18 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1021 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1123 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1130 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1132 DISTANCE = 13.49 ANGSTROMS REMARK 525 HOH A1144 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A1155 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH A1160 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1162 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1187 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A1188 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A1192 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1197 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1127 DISTANCE = 13.36 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1144 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH A1146 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1163 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1170 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1125 DISTANCE = 13.43 ANGSTROMS REMARK 525 HOH A1133 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH A1140 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1168 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1184 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1188 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 13.39 ANGSTROMS REMARK 525 HOH A1124 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1130 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1156 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A1170 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A1172 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1191 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1195 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A1203 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1123 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1140 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1150 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A1152 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1131 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A1160 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A1114 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1127 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1133 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A1178 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1123 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1127 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A1152 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1162 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1178 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1122 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1153 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1161 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 9.35 ANGSTROMS REMARK 525 HOH A1180 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1152 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1154 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1168 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1186 DISTANCE = 6.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 140 DBREF 1HC0 A 1 129 UNP P00698 LYC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET IOD A 130 1 HET IOD A 131 1 HET IOD A 132 1 HET IOD A 133 1 HET IOD A 134 1 HET IOD A 135 1 HET IOD A 136 1 HET IOD A 137 1 HET IOD A 138 1 HET IOD A 139 1 HET CL A 140 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 2 IOD 10(I 1-) FORMUL 12 CL CL 1- FORMUL 13 HOH *220(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 SER A 24 ASN A 37 1 14 HELIX 3 3 CYS A 80 SER A 85 5 6 HELIX 4 4 ILE A 88 SER A 100 1 13 HELIX 5 5 ASN A 103 ALA A 107 5 5 HELIX 6 6 TRP A 108 CYS A 115 1 8 HELIX 7 7 ASP A 119 ARG A 125 5 7 SHEET 1 AA 3 THR A 43 ARG A 45 0 SHEET 2 AA 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.01 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.00 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.02 SITE 1 AC1 3 THR A 89 HOH A1136 HOH A1196 SITE 1 AC2 3 THR A 69 HOH A2131 HOH A2132 SITE 1 AC3 7 IOD A 132 HOH A1181 HOH A4131 HOH A4133 SITE 2 AC3 7 HOH A4134 HOH A4135 HOH A4136 SITE 1 AC4 7 ARG A 128 HOH A3131 HOH A3132 HOH A3133 SITE 2 AC4 7 HOH A3134 HOH A3135 HOH A3136 SITE 1 AC5 8 ARG A 14 IOD A 130 HOH A4131 HOH A4132 SITE 2 AC5 8 HOH A4133 HOH A4134 HOH A4135 HOH A4136 SITE 1 AC6 6 HOH A5131 HOH A5132 HOH A5133 HOH A5134 SITE 2 AC6 6 HOH A5135 HOH A5136 SITE 1 AC7 8 GLU A 35 ASP A 52 HOH A6131 HOH A6132 SITE 2 AC7 8 HOH A6133 HOH A6134 HOH A6135 HOH A6136 SITE 1 AC8 6 HOH A7131 HOH A7132 HOH A7133 HOH A7134 SITE 2 AC8 6 HOH A7135 HOH A7136 SITE 1 AC9 4 SER A 86 HOH A8131 HOH A8132 HOH A8133 SITE 1 BC1 1 HOH A1029 SITE 1 BC2 1 HOH A1148 CRYST1 77.765 77.765 37.555 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012859 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026628 0.00000 MODEL 1