HEADER GROWTH RESPONSE PROTEIN 20-SEP-96 1HCW TITLE 23-RESIDUE DESIGNED METAL-FREE PEPTIDE BASED ON THE ZINC FINGER TITLE 2 DOMAINS, NMR, 35 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BBA1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS GROWTH RESPONSE PROTEIN, DE NOVO PROTEIN DESIGN, SUPERSECONDARY MOTIF EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR B.IMPERIALI,M.STRUTHERS,R.P.CHENG REVDAT 3 23-FEB-22 1HCW 1 REMARK LINK REVDAT 2 24-FEB-09 1HCW 1 VERSN REVDAT 1 12-MAR-97 1HCW 0 JRNL AUTH M.D.STRUTHERS,R.P.CHENG,B.IMPERIALI JRNL TITL DESIGN OF A MONOMERIC 23-RESIDUE POLYPEPTIDE WITH DEFINED JRNL TITL 2 TERTIARY STRUCTURE. JRNL REF SCIENCE V. 271 342 1996 JRNL REFN ISSN 0036-8075 JRNL PMID 8553067 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.D.STRUTHERS,R.P.CHENG,B.IMPERIALI REMARK 1 TITL ECONOMY IN PROTEIN DESIGN: EVOLUTION OF A METAL-INDEPENDENT REMARK 1 TITL 2 BETA-BETA-ALPHA MOTIF BASED ON THE ZINC FINGER DOMAINS REMARK 1 REF J.AM.CHEM.SOC. V. 118 3073 1996 REMARK 1 REFN ISSN 0002-7863 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRCHITECT (BIOSYM TECHNOLOGIES) TECHNOLOGIES), REMARK 3 NMRCHITECT (BIOSYM TECHNOLOGIES) TECHNOLOGIES) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HCW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173787. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TOCSY; NOESY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NOE-RESTRAINED SIMULATED REMARK 210 -ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : RESTRAINT VIOLATIONS, RMS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 THR A 7 CA - CB - CG2 ANGL. DEV. = 9.6 DEGREES REMARK 500 1 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 1 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 1 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 2 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 2 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 2 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 2 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 2 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 3 THR A 7 CA - CB - CG2 ANGL. DEV. = 8.9 DEGREES REMARK 500 3 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 3 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 3 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 3 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 3 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 4 TYR A 1 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 4 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 4 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 4 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 4 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 4 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.1 DEGREES REMARK 500 5 THR A 7 CA - CB - CG2 ANGL. DEV. = 8.8 DEGREES REMARK 500 5 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 5 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 5 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 5 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 5 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 6 THR A 7 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 6 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 6 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 6 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 6 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 6 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.1 DEGREES REMARK 500 7 THR A 7 CA - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 7 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 7 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 7 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 7 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 7 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 8 THR A 7 CA - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 8 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 8 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 8 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 8 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 HIS A 21 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 9 THR A 7 CA - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 9 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 9 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 210 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 -122.97 60.84 REMARK 500 1 SER A 5 64.28 -104.74 REMARK 500 1 PYA A 6 88.44 -152.61 REMARK 500 1 PHE A 8 -124.52 -83.87 REMARK 500 1 SER A 9 -95.22 -111.60 REMARK 500 1 ARG A 10 -67.29 -141.60 REMARK 500 2 PRO A 4 -132.52 62.59 REMARK 500 2 PHE A 8 -99.73 -82.77 REMARK 500 2 SER A 9 -109.68 -131.30 REMARK 500 2 ARG A 10 107.54 -163.82 REMARK 500 2 SER A 11 46.34 35.44 REMARK 500 2 ASP A 12 -45.60 -153.55 REMARK 500 3 PRO A 4 -102.86 52.09 REMARK 500 3 PYA A 6 83.90 -154.57 REMARK 500 3 PHE A 8 -99.28 -77.84 REMARK 500 3 SER A 9 -98.37 -133.54 REMARK 500 3 ARG A 10 83.98 -150.69 REMARK 500 3 SER A 11 -38.60 61.31 REMARK 500 4 PRO A 4 -100.83 54.53 REMARK 500 4 PYA A 6 85.12 -150.80 REMARK 500 4 PHE A 8 -126.95 -124.67 REMARK 500 4 ASP A 12 -41.94 -175.04 REMARK 500 5 PRO A 4 -105.77 64.18 REMARK 500 5 PYA A 6 85.00 -150.84 REMARK 500 5 PHE A 8 -93.30 -74.42 REMARK 500 5 SER A 9 -101.13 -138.68 REMARK 500 5 ARG A 10 85.65 -150.89 REMARK 500 5 SER A 11 51.58 31.62 REMARK 500 5 ASP A 12 -30.54 -135.97 REMARK 500 5 HIS A 21 -52.33 -132.91 REMARK 500 5 ALA A 22 102.34 58.46 REMARK 500 6 PHE A 8 -112.29 -98.00 REMARK 500 6 ARG A 10 93.44 -34.14 REMARK 500 6 ASP A 12 -37.39 -141.51 REMARK 500 7 SER A 5 16.37 59.27 REMARK 500 7 PHE A 8 -127.96 -124.27 REMARK 500 7 ARG A 10 -50.15 -22.14 REMARK 500 7 SER A 11 -42.59 -131.16 REMARK 500 8 PRO A 4 -107.36 61.18 REMARK 500 8 SER A 5 62.14 -119.98 REMARK 500 8 PHE A 8 -113.82 -95.48 REMARK 500 8 ARG A 10 67.41 23.74 REMARK 500 8 SER A 11 -40.75 64.18 REMARK 500 9 PRO A 4 -103.81 64.01 REMARK 500 9 PHE A 8 -104.70 -100.45 REMARK 500 9 ARG A 10 91.16 -21.01 REMARK 500 9 SER A 11 -36.32 66.42 REMARK 500 10 PRO A 4 -110.01 61.70 REMARK 500 10 SER A 5 58.07 -115.27 REMARK 500 10 PHE A 8 -124.74 -102.10 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 1 0.10 SIDE CHAIN REMARK 500 3 TYR A 1 0.11 SIDE CHAIN REMARK 500 4 TYR A 1 0.15 SIDE CHAIN REMARK 500 4 PHE A 8 0.09 SIDE CHAIN REMARK 500 5 TYR A 1 0.12 SIDE CHAIN REMARK 500 6 TYR A 1 0.08 SIDE CHAIN REMARK 500 8 TYR A 1 0.08 SIDE CHAIN REMARK 500 9 TYR A 1 0.08 SIDE CHAIN REMARK 500 9 PHE A 8 0.08 SIDE CHAIN REMARK 500 10 TYR A 1 0.08 SIDE CHAIN REMARK 500 11 TYR A 1 0.07 SIDE CHAIN REMARK 500 12 TYR A 1 0.10 SIDE CHAIN REMARK 500 13 TYR A 1 0.08 SIDE CHAIN REMARK 500 14 TYR A 1 0.10 SIDE CHAIN REMARK 500 14 PHE A 8 0.09 SIDE CHAIN REMARK 500 15 TYR A 1 0.11 SIDE CHAIN REMARK 500 16 TYR A 1 0.07 SIDE CHAIN REMARK 500 17 TYR A 1 0.10 SIDE CHAIN REMARK 500 18 PHE A 8 0.10 SIDE CHAIN REMARK 500 19 TYR A 1 0.11 SIDE CHAIN REMARK 500 20 TYR A 1 0.13 SIDE CHAIN REMARK 500 21 TYR A 1 0.12 SIDE CHAIN REMARK 500 21 PHE A 8 0.08 SIDE CHAIN REMARK 500 22 TYR A 1 0.11 SIDE CHAIN REMARK 500 23 PHE A 8 0.09 SIDE CHAIN REMARK 500 24 PHE A 8 0.07 SIDE CHAIN REMARK 500 25 TYR A 1 0.07 SIDE CHAIN REMARK 500 26 TYR A 1 0.12 SIDE CHAIN REMARK 500 27 TYR A 1 0.11 SIDE CHAIN REMARK 500 28 TYR A 1 0.10 SIDE CHAIN REMARK 500 29 TYR A 1 0.09 SIDE CHAIN REMARK 500 30 TYR A 1 0.10 SIDE CHAIN REMARK 500 31 TYR A 1 0.08 SIDE CHAIN REMARK 500 32 TYR A 1 0.11 SIDE CHAIN REMARK 500 35 TYR A 1 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 24 DBREF 1HCW A 0 24 PDB 1HCW 1HCW 0 24 SEQRES 1 A 25 ACE TYR THR VAL PRO SER PYA THR PHE SER ARG SER ASP SEQRES 2 A 25 GLU LEU ALA LYS LEU LEU ARG LEU HIS ALA GLY NH2 MODRES 1HCW PYA A 6 ALA 3-(1,10-PHENANTHROL-2-YL)-L-ALANINE HET ACE A 0 3 HET PYA A 6 19 HET NH2 A 24 1 HETNAM ACE ACETYL GROUP HETNAM PYA 3-(1,10-PHENANTHROL-2-YL)-L-ALANINE HETNAM NH2 AMINO GROUP FORMUL 1 ACE C2 H4 O FORMUL 1 PYA C15 H13 N3 O2 FORMUL 1 NH2 H2 N HELIX 1 1 ALA A 15 LEU A 20 1 6 LINK C ACE A 0 N TYR A 1 1555 1555 1.34 LINK C SER A 5 N PYA A 6 1555 1555 1.36 LINK C PYA A 6 N THR A 7 1555 1555 1.35 LINK C GLY A 23 N NH2 A 24 1555 1555 1.33 SITE 1 AC2 1 GLY A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C ACE A 0 -9.517 -2.971 1.175 1.00 0.00 C HETATM 2 O ACE A 0 -9.133 -3.625 2.148 1.00 0.00 O HETATM 3 CH3 ACE A 0 -10.192 -3.626 -0.017 1.00 0.00 C