data_1HCX # _entry.id 1HCX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HCX PDBE EBI-6186 WWPDB D_1290006186 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1H8G _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'C-TERMINAL DOMAIN OF THE MAJOR AUTOLYSIN (C-LYTA) FROM STREPTOCOCCUS PNEUMONIAE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HCX _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-05-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fernandez-Tornero, C.' 1 'Lopez, R.' 2 'Garcia, E.' 3 'Gimenez-Gallego, G.' 4 'Romero, A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Novel Solenoid Fold in the Cell Wall Anchoring Domain of the Pneumococcal Virulence Factor Lyta' Nat.Struct.Biol. 8 1020 ? 2001 NSBIEW US 1072-8368 2024 ? 11694890 10.1038/NSB724 1 'Cloning and Expression of Gene Fragments Encoding the Choline-Binding Domain of Pneumococcal Murein Hydrolases' Gene 89 69 ? 1990 GENED6 NE 0378-1119 0861 ? 1973677 '10.1016/0378-1119(90)90207-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fernandez-Tornero, C.' 1 ? primary 'Lopez, R.' 2 ? primary 'Garcia, E.' 3 ? primary 'Gimenez-Gallego, G.' 4 ? primary 'Romero, A.' 5 ? 1 'Sanchez-Puelles, J.M.' 6 ? 1 'Sanz, J.M.' 7 ? 1 'Garcia, J.L.' 8 ? 1 'Garcia, E.' 9 ? # _cell.entry_id 1HCX _cell.length_a 58.049 _cell.length_b 118.177 _cell.length_c 104.859 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HCX _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MAJOR AUTOLYSIN' 14949.556 2 3.5.1.28 ? 'CHOLINE-BINDING DOMAIN' ? 2 non-polymer syn ;2,2':6',2''-TERPYRIDINE PLATINUM(II) Chloride ; 463.799 1 ? ? ? ? 3 non-polymer syn 'CHOLINE ION' 104.171 5 ? ? ? ? 4 non-polymer syn DECYLAMINE-N,N-DIMETHYL-N-OXIDE 201.349 2 ? ? ? ? 5 water nat water 18.015 79 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'C-LYTA, CELL WALL BINDING DOMAIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYL DAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYL DAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 TYR n 1 4 PRO n 1 5 LYS n 1 6 ASP n 1 7 LYS n 1 8 PHE n 1 9 GLU n 1 10 LYS n 1 11 ILE n 1 12 ASN n 1 13 GLY n 1 14 THR n 1 15 TRP n 1 16 TYR n 1 17 TYR n 1 18 PHE n 1 19 ASP n 1 20 SER n 1 21 SER n 1 22 GLY n 1 23 TYR n 1 24 MET n 1 25 LEU n 1 26 ALA n 1 27 ASP n 1 28 ARG n 1 29 TRP n 1 30 ARG n 1 31 LYS n 1 32 HIS n 1 33 THR n 1 34 ASP n 1 35 GLY n 1 36 ASN n 1 37 TRP n 1 38 TYR n 1 39 TRP n 1 40 PHE n 1 41 ASP n 1 42 ASN n 1 43 SER n 1 44 GLY n 1 45 GLU n 1 46 MET n 1 47 ALA n 1 48 THR n 1 49 GLY n 1 50 TRP n 1 51 LYS n 1 52 LYS n 1 53 ILE n 1 54 ALA n 1 55 ASP n 1 56 LYS n 1 57 TRP n 1 58 TYR n 1 59 TYR n 1 60 PHE n 1 61 ASN n 1 62 GLU n 1 63 GLU n 1 64 GLY n 1 65 ALA n 1 66 MET n 1 67 LYS n 1 68 THR n 1 69 GLY n 1 70 TRP n 1 71 VAL n 1 72 LYS n 1 73 TYR n 1 74 LYS n 1 75 ASP n 1 76 THR n 1 77 TRP n 1 78 TYR n 1 79 TYR n 1 80 LEU n 1 81 ASP n 1 82 ALA n 1 83 LYS n 1 84 GLU n 1 85 GLY n 1 86 ALA n 1 87 MET n 1 88 VAL n 1 89 SER n 1 90 ASN n 1 91 ALA n 1 92 PHE n 1 93 ILE n 1 94 GLN n 1 95 SER n 1 96 ALA n 1 97 ASP n 1 98 GLY n 1 99 THR n 1 100 GLY n 1 101 TRP n 1 102 TYR n 1 103 TYR n 1 104 LEU n 1 105 LYS n 1 106 PRO n 1 107 ASP n 1 108 GLY n 1 109 THR n 1 110 LEU n 1 111 ALA n 1 112 ASP n 1 113 ARG n 1 114 PRO n 1 115 GLU n 1 116 PHE n 1 117 THR n 1 118 VAL n 1 119 GLU n 1 120 PRO n 1 121 ASP n 1 122 GLY n 1 123 LEU n 1 124 ILE n 1 125 THR n 1 126 VAL n 1 127 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LYTA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STREPTOCOCCUS PNEUMONIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1313 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location EXTRACELLULAR _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain RB791 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PCE17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ALYS_STRPN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P06653 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HCX A 1 ? 127 ? P06653 192 ? 318 ? 192 318 2 1 1HCX B 1 ? 127 ? P06653 192 ? 318 ? 192 318 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CHT non-polymer . 'CHOLINE ION' ? 'C5 H14 N O 1' 104.171 DDQ non-polymer . DECYLAMINE-N,N-DIMETHYL-N-OXIDE ? 'C12 H27 N O' 201.349 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPT non-polymer . ;2,2':6',2''-TERPYRIDINE PLATINUM(II) Chloride ; ? 'C15 H11 Cl N3 Pt 1' 463.799 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HCX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.40 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% PEG 4000, 0.2 M NA-ACETATE, 0.1 M AMMONIUM-ACETATE, PH 6.4, 0.15 M CHOLINE-CL, 0.4 MM DDAO.' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2000-10-30 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9840 1.0 2 1.0695 1.0 3 1.0715 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9840,1.0695,1.0715 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HCX _reflns.observed_criterion_sigma_I 8.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.000 _reflns.d_resolution_high 2.600 _reflns.number_obs 11378 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.06200 _reflns.pdbx_Rsym_value 0.04900 _reflns.pdbx_netI_over_sigmaI 18.0000 _reflns.B_iso_Wilson_estimate 43.6 _reflns.pdbx_redundancy 4.500 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.33700 _reflns_shell.pdbx_Rsym_value 0.26600 _reflns_shell.meanI_over_sigI_obs 5.400 _reflns_shell.pdbx_redundancy 4.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HCX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11378 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1255263.49 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.9 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.239 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.239 _refine.ls_R_factor_R_free 0.302 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1169 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 48.5 _refine.aniso_B[1][1] 14.22 _refine.aniso_B[2][2] -12.10 _refine.aniso_B[3][3] -2.12 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.318346 _refine.solvent_model_param_bsol 32.4388 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1HCX _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.43 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.50 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2122 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 2283 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 34.9 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.69 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.31 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.23 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.76 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.69 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 1717 _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.395 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 8.9 _refine_ls_shell.number_reflns_R_free 168 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.583480 _struct_ncs_oper.matrix[1][2] -0.212090 _struct_ncs_oper.matrix[1][3] 0.783950 _struct_ncs_oper.matrix[2][1] -0.054140 _struct_ncs_oper.matrix[2][2] -0.952990 _struct_ncs_oper.matrix[2][3] -0.298110 _struct_ncs_oper.matrix[3][1] 0.810320 _struct_ncs_oper.matrix[3][2] -0.216380 _struct_ncs_oper.matrix[3][3] 0.544570 _struct_ncs_oper.vector[1] 20.79011 _struct_ncs_oper.vector[2] 70.87526 _struct_ncs_oper.vector[3] 1.14969 # _struct.entry_id 1HCX _struct.title 'Choline binding domain of the major autolysin (C-LytA) from Streptococcus pneumoniae' _struct.pdbx_descriptor 'MAJOR AUTOLYSIN (E.C.3.5.1.28)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HCX _struct_keywords.pdbx_keywords 'CHOLINE-BINDING DOMAIN' _struct_keywords.text 'CHOLINE-BINDING DOMAIN, CELL WALL ATTACHMENT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 3 ? J N N 3 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_comp_id TPT _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id PT1 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id L _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id O _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TPT _struct_conn.ptnr1_auth_seq_id 1319 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 2003 _struct_conn.ptnr2_symmetry 6_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.644 _struct_conn.pdbx_value_order ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? AD ? 2 ? AE ? 2 ? AF ? 2 ? BA ? 2 ? BB ? 2 ? BC ? 2 ? BD ? 2 ? BE ? 2 ? BF ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AF 1 2 ? anti-parallel BA 1 2 ? anti-parallel BB 1 2 ? anti-parallel BC 1 2 ? anti-parallel BD 1 2 ? anti-parallel BE 1 2 ? anti-parallel BF 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 7 ? ILE A 11 ? LYS A 198 ILE A 202 AA 2 THR A 14 ? PHE A 18 ? THR A 205 PHE A 209 AB 1 ARG A 28 ? HIS A 32 ? ARG A 219 HIS A 223 AB 2 ASN A 36 ? PHE A 40 ? ASN A 227 PHE A 231 AC 1 GLY A 49 ? ILE A 53 ? GLY A 240 ILE A 244 AC 2 LYS A 56 ? PHE A 60 ? LYS A 247 PHE A 251 AD 1 GLY A 69 ? TYR A 73 ? GLY A 260 TYR A 264 AD 2 THR A 76 ? LEU A 80 ? THR A 267 LEU A 271 AE 1 ALA A 91 ? SER A 95 ? ALA A 282 SER A 286 AE 2 GLY A 100 ? LEU A 104 ? GLY A 291 LEU A 295 AF 1 GLU A 115 ? GLU A 119 ? GLU A 306 GLU A 310 AF 2 LEU A 123 ? LYS A 127 ? LEU A 314 LYS A 318 BA 1 LYS B 7 ? ILE B 11 ? LYS B 198 ILE B 202 BA 2 THR B 14 ? PHE B 18 ? THR B 205 PHE B 209 BB 1 ARG B 28 ? HIS B 32 ? ARG B 219 HIS B 223 BB 2 ASN B 36 ? PHE B 40 ? ASN B 227 PHE B 231 BC 1 GLY B 49 ? ILE B 53 ? GLY B 240 ILE B 244 BC 2 LYS B 56 ? PHE B 60 ? LYS B 247 PHE B 251 BD 1 GLY B 69 ? TYR B 73 ? GLY B 260 TYR B 264 BD 2 THR B 76 ? LEU B 80 ? THR B 267 LEU B 271 BE 1 ALA B 91 ? SER B 95 ? ALA B 282 SER B 286 BE 2 GLY B 100 ? LEU B 104 ? GLY B 291 LEU B 295 BF 1 GLU B 115 ? GLU B 119 ? GLU B 306 GLU B 310 BF 2 LEU B 123 ? LYS B 127 ? LEU B 314 LYS B 318 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 11 ? N ILE A 202 O THR A 14 ? O THR A 205 AB 1 2 N HIS A 32 ? N HIS A 223 O ASN A 36 ? O ASN A 227 AC 1 2 N ILE A 53 ? N ILE A 244 O LYS A 56 ? O LYS A 247 AD 1 2 N TYR A 73 ? N TYR A 264 O THR A 76 ? O THR A 267 AE 1 2 N SER A 95 ? N SER A 286 O GLY A 100 ? O GLY A 291 AF 1 2 N GLU A 119 ? N GLU A 310 O LEU A 123 ? O LEU A 314 BA 1 2 N ILE B 11 ? N ILE B 202 O THR B 14 ? O THR B 205 BB 1 2 N HIS B 32 ? N HIS B 223 O ASN B 36 ? O ASN B 227 BC 1 2 N ILE B 53 ? N ILE B 244 O LYS B 56 ? O LYS B 247 BD 1 2 N TYR B 73 ? N TYR B 264 O THR B 76 ? O THR B 267 BE 1 2 N SER B 95 ? N SER B 286 O GLY B 100 ? O GLY B 291 BF 1 2 N GLU B 119 ? N GLU B 310 O LEU B 123 ? O LEU B 314 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE TPT A1319' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CHT A1320' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CHT A1321' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CHT A1323' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE DDQ B1319' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE DDQ B1320' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CHT B1321' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CHT B1322' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TRP A 50 ? TRP A 241 . ? 1_555 ? 2 AC1 7 TRP A 57 ? TRP A 248 . ? 1_555 ? 3 AC1 7 TYR A 73 ? TYR A 264 . ? 1_555 ? 4 AC1 7 TYR A 78 ? TYR A 269 . ? 1_555 ? 5 AC1 7 ASP A 107 ? ASP A 298 . ? 1_555 ? 6 AC1 7 TYR B 3 ? TYR B 194 . ? 1_555 ? 7 AC1 7 HOH L . ? HOH B 2003 . ? 1_555 ? 8 AC2 4 PHE A 8 ? PHE A 199 . ? 1_555 ? 9 AC2 4 TRP A 15 ? TRP A 206 . ? 1_555 ? 10 AC2 4 GLU A 63 ? GLU A 254 . ? 1_555 ? 11 AC2 4 HOH K . ? HOH A 2028 . ? 1_555 ? 12 AC3 5 TRP A 29 ? TRP A 220 . ? 1_555 ? 13 AC3 5 TRP A 37 ? TRP A 228 . ? 1_555 ? 14 AC3 5 MET A 66 ? MET A 257 . ? 1_555 ? 15 AC3 5 LYS A 83 ? LYS A 274 . ? 1_555 ? 16 AC3 5 GLU A 84 ? GLU A 275 . ? 1_555 ? 17 AC4 6 TRP A 70 ? TRP A 261 . ? 1_555 ? 18 AC4 6 TRP A 77 ? TRP A 268 . ? 1_555 ? 19 AC4 6 TYR A 102 ? TYR A 293 . ? 1_555 ? 20 AC4 6 HOH K . ? HOH A 2029 . ? 1_555 ? 21 AC4 6 THR B 33 ? THR B 224 . ? 1_555 ? 22 AC4 6 ASP B 34 ? ASP B 225 . ? 1_555 ? 23 AC5 6 LYS A 72 ? LYS A 263 . ? 1_555 ? 24 AC5 6 ASP A 75 ? ASP A 266 . ? 1_555 ? 25 AC5 6 PHE B 8 ? PHE B 199 . ? 1_555 ? 26 AC5 6 HIS B 32 ? HIS B 223 . ? 1_555 ? 27 AC5 6 TYR B 38 ? TYR B 229 . ? 1_555 ? 28 AC5 6 GLU B 63 ? GLU B 254 . ? 1_555 ? 29 AC6 6 TRP B 29 ? TRP B 220 . ? 1_555 ? 30 AC6 6 ARG B 30 ? ARG B 221 . ? 1_555 ? 31 AC6 6 LYS B 31 ? LYS B 222 . ? 1_555 ? 32 AC6 6 TRP B 37 ? TRP B 228 . ? 1_555 ? 33 AC6 6 GLU B 84 ? GLU B 275 . ? 1_555 ? 34 AC6 6 PRO B 120 ? PRO B 311 . ? 1_555 ? 35 AC7 3 TRP B 50 ? TRP B 241 . ? 1_555 ? 36 AC7 3 TRP B 57 ? TRP B 248 . ? 1_555 ? 37 AC7 3 TYR B 78 ? TYR B 269 . ? 1_555 ? 38 AC8 3 ASP A 121 ? ASP A 312 . ? 1_555 ? 39 AC8 3 TRP B 70 ? TRP B 261 . ? 1_555 ? 40 AC8 3 TRP B 77 ? TRP B 268 . ? 1_555 ? # _database_PDB_matrix.entry_id 1HCX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HCX _atom_sites.fract_transf_matrix[1][1] 0.017227 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008462 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009537 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O PT S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 192 192 GLY GLY A . n A 1 2 SER 2 193 193 SER SER A . n A 1 3 TYR 3 194 194 TYR TYR A . n A 1 4 PRO 4 195 195 PRO PRO A . n A 1 5 LYS 5 196 196 LYS LYS A . n A 1 6 ASP 6 197 197 ASP ASP A . n A 1 7 LYS 7 198 198 LYS LYS A . n A 1 8 PHE 8 199 199 PHE PHE A . n A 1 9 GLU 9 200 200 GLU GLU A . n A 1 10 LYS 10 201 201 LYS LYS A . n A 1 11 ILE 11 202 202 ILE ILE A . n A 1 12 ASN 12 203 203 ASN ASN A . n A 1 13 GLY 13 204 204 GLY GLY A . n A 1 14 THR 14 205 205 THR THR A . n A 1 15 TRP 15 206 206 TRP TRP A . n A 1 16 TYR 16 207 207 TYR TYR A . n A 1 17 TYR 17 208 208 TYR TYR A . n A 1 18 PHE 18 209 209 PHE PHE A . n A 1 19 ASP 19 210 210 ASP ASP A . n A 1 20 SER 20 211 211 SER SER A . n A 1 21 SER 21 212 212 SER SER A . n A 1 22 GLY 22 213 213 GLY GLY A . n A 1 23 TYR 23 214 214 TYR TYR A . n A 1 24 MET 24 215 215 MET MET A . n A 1 25 LEU 25 216 216 LEU LEU A . n A 1 26 ALA 26 217 217 ALA ALA A . n A 1 27 ASP 27 218 218 ASP ASP A . n A 1 28 ARG 28 219 219 ARG ARG A . n A 1 29 TRP 29 220 220 TRP TRP A . n A 1 30 ARG 30 221 221 ARG ARG A . n A 1 31 LYS 31 222 222 LYS LYS A . n A 1 32 HIS 32 223 223 HIS HIS A . n A 1 33 THR 33 224 224 THR THR A . n A 1 34 ASP 34 225 225 ASP ASP A . n A 1 35 GLY 35 226 226 GLY GLY A . n A 1 36 ASN 36 227 227 ASN ASN A . n A 1 37 TRP 37 228 228 TRP TRP A . n A 1 38 TYR 38 229 229 TYR TYR A . n A 1 39 TRP 39 230 230 TRP TRP A . n A 1 40 PHE 40 231 231 PHE PHE A . n A 1 41 ASP 41 232 232 ASP ASP A . n A 1 42 ASN 42 233 233 ASN ASN A . n A 1 43 SER 43 234 234 SER SER A . n A 1 44 GLY 44 235 235 GLY GLY A . n A 1 45 GLU 45 236 236 GLU GLU A . n A 1 46 MET 46 237 237 MET MET A . n A 1 47 ALA 47 238 238 ALA ALA A . n A 1 48 THR 48 239 239 THR THR A . n A 1 49 GLY 49 240 240 GLY GLY A . n A 1 50 TRP 50 241 241 TRP TRP A . n A 1 51 LYS 51 242 242 LYS LYS A . n A 1 52 LYS 52 243 243 LYS LYS A . n A 1 53 ILE 53 244 244 ILE ILE A . n A 1 54 ALA 54 245 245 ALA ALA A . n A 1 55 ASP 55 246 246 ASP ASP A . n A 1 56 LYS 56 247 247 LYS LYS A . n A 1 57 TRP 57 248 248 TRP TRP A . n A 1 58 TYR 58 249 249 TYR TYR A . n A 1 59 TYR 59 250 250 TYR TYR A . n A 1 60 PHE 60 251 251 PHE PHE A . n A 1 61 ASN 61 252 252 ASN ASN A . n A 1 62 GLU 62 253 253 GLU GLU A . n A 1 63 GLU 63 254 254 GLU GLU A . n A 1 64 GLY 64 255 255 GLY GLY A . n A 1 65 ALA 65 256 256 ALA ALA A . n A 1 66 MET 66 257 257 MET MET A . n A 1 67 LYS 67 258 258 LYS LYS A . n A 1 68 THR 68 259 259 THR THR A . n A 1 69 GLY 69 260 260 GLY GLY A . n A 1 70 TRP 70 261 261 TRP TRP A . n A 1 71 VAL 71 262 262 VAL VAL A . n A 1 72 LYS 72 263 263 LYS LYS A . n A 1 73 TYR 73 264 264 TYR TYR A . n A 1 74 LYS 74 265 265 LYS LYS A . n A 1 75 ASP 75 266 266 ASP ASP A . n A 1 76 THR 76 267 267 THR THR A . n A 1 77 TRP 77 268 268 TRP TRP A . n A 1 78 TYR 78 269 269 TYR TYR A . n A 1 79 TYR 79 270 270 TYR TYR A . n A 1 80 LEU 80 271 271 LEU LEU A . n A 1 81 ASP 81 272 272 ASP ASP A . n A 1 82 ALA 82 273 273 ALA ALA A . n A 1 83 LYS 83 274 274 LYS LYS A . n A 1 84 GLU 84 275 275 GLU GLU A . n A 1 85 GLY 85 276 276 GLY GLY A . n A 1 86 ALA 86 277 277 ALA ALA A . n A 1 87 MET 87 278 278 MET MET A . n A 1 88 VAL 88 279 279 VAL VAL A . n A 1 89 SER 89 280 280 SER SER A . n A 1 90 ASN 90 281 281 ASN ASN A . n A 1 91 ALA 91 282 282 ALA ALA A . n A 1 92 PHE 92 283 283 PHE PHE A . n A 1 93 ILE 93 284 284 ILE ILE A . n A 1 94 GLN 94 285 285 GLN GLN A . n A 1 95 SER 95 286 286 SER SER A . n A 1 96 ALA 96 287 287 ALA ALA A . n A 1 97 ASP 97 288 288 ASP ASP A . n A 1 98 GLY 98 289 289 GLY GLY A . n A 1 99 THR 99 290 290 THR THR A . n A 1 100 GLY 100 291 291 GLY GLY A . n A 1 101 TRP 101 292 292 TRP TRP A . n A 1 102 TYR 102 293 293 TYR TYR A . n A 1 103 TYR 103 294 294 TYR TYR A . n A 1 104 LEU 104 295 295 LEU LEU A . n A 1 105 LYS 105 296 296 LYS LYS A . n A 1 106 PRO 106 297 297 PRO PRO A . n A 1 107 ASP 107 298 298 ASP ASP A . n A 1 108 GLY 108 299 299 GLY GLY A . n A 1 109 THR 109 300 300 THR THR A . n A 1 110 LEU 110 301 301 LEU LEU A . n A 1 111 ALA 111 302 302 ALA ALA A . n A 1 112 ASP 112 303 303 ASP ASP A . n A 1 113 ARG 113 304 304 ARG ARG A . n A 1 114 PRO 114 305 305 PRO PRO A . n A 1 115 GLU 115 306 306 GLU GLU A . n A 1 116 PHE 116 307 307 PHE PHE A . n A 1 117 THR 117 308 308 THR THR A . n A 1 118 VAL 118 309 309 VAL VAL A . n A 1 119 GLU 119 310 310 GLU GLU A . n A 1 120 PRO 120 311 311 PRO PRO A . n A 1 121 ASP 121 312 312 ASP ASP A . n A 1 122 GLY 122 313 313 GLY GLY A . n A 1 123 LEU 123 314 314 LEU LEU A . n A 1 124 ILE 124 315 315 ILE ILE A . n A 1 125 THR 125 316 316 THR THR A . n A 1 126 VAL 126 317 317 VAL VAL A . n A 1 127 LYS 127 318 318 LYS LYS A . n B 1 1 GLY 1 192 192 GLY GLY B . n B 1 2 SER 2 193 193 SER SER B . n B 1 3 TYR 3 194 194 TYR TYR B . n B 1 4 PRO 4 195 195 PRO PRO B . n B 1 5 LYS 5 196 196 LYS LYS B . n B 1 6 ASP 6 197 197 ASP ASP B . n B 1 7 LYS 7 198 198 LYS LYS B . n B 1 8 PHE 8 199 199 PHE PHE B . n B 1 9 GLU 9 200 200 GLU GLU B . n B 1 10 LYS 10 201 201 LYS LYS B . n B 1 11 ILE 11 202 202 ILE ILE B . n B 1 12 ASN 12 203 203 ASN ASN B . n B 1 13 GLY 13 204 204 GLY GLY B . n B 1 14 THR 14 205 205 THR THR B . n B 1 15 TRP 15 206 206 TRP TRP B . n B 1 16 TYR 16 207 207 TYR TYR B . n B 1 17 TYR 17 208 208 TYR TYR B . n B 1 18 PHE 18 209 209 PHE PHE B . n B 1 19 ASP 19 210 210 ASP ASP B . n B 1 20 SER 20 211 211 SER SER B . n B 1 21 SER 21 212 212 SER SER B . n B 1 22 GLY 22 213 213 GLY GLY B . n B 1 23 TYR 23 214 214 TYR TYR B . n B 1 24 MET 24 215 215 MET MET B . n B 1 25 LEU 25 216 216 LEU LEU B . n B 1 26 ALA 26 217 217 ALA ALA B . n B 1 27 ASP 27 218 218 ASP ASP B . n B 1 28 ARG 28 219 219 ARG ARG B . n B 1 29 TRP 29 220 220 TRP TRP B . n B 1 30 ARG 30 221 221 ARG ARG B . n B 1 31 LYS 31 222 222 LYS LYS B . n B 1 32 HIS 32 223 223 HIS HIS B . n B 1 33 THR 33 224 224 THR THR B . n B 1 34 ASP 34 225 225 ASP ASP B . n B 1 35 GLY 35 226 226 GLY GLY B . n B 1 36 ASN 36 227 227 ASN ASN B . n B 1 37 TRP 37 228 228 TRP TRP B . n B 1 38 TYR 38 229 229 TYR TYR B . n B 1 39 TRP 39 230 230 TRP TRP B . n B 1 40 PHE 40 231 231 PHE PHE B . n B 1 41 ASP 41 232 232 ASP ASP B . n B 1 42 ASN 42 233 233 ASN ASN B . n B 1 43 SER 43 234 234 SER SER B . n B 1 44 GLY 44 235 235 GLY GLY B . n B 1 45 GLU 45 236 236 GLU GLU B . n B 1 46 MET 46 237 237 MET MET B . n B 1 47 ALA 47 238 238 ALA ALA B . n B 1 48 THR 48 239 239 THR THR B . n B 1 49 GLY 49 240 240 GLY GLY B . n B 1 50 TRP 50 241 241 TRP TRP B . n B 1 51 LYS 51 242 242 LYS LYS B . n B 1 52 LYS 52 243 243 LYS LYS B . n B 1 53 ILE 53 244 244 ILE ILE B . n B 1 54 ALA 54 245 245 ALA ALA B . n B 1 55 ASP 55 246 246 ASP ASP B . n B 1 56 LYS 56 247 247 LYS LYS B . n B 1 57 TRP 57 248 248 TRP TRP B . n B 1 58 TYR 58 249 249 TYR TYR B . n B 1 59 TYR 59 250 250 TYR TYR B . n B 1 60 PHE 60 251 251 PHE PHE B . n B 1 61 ASN 61 252 252 ASN ASN B . n B 1 62 GLU 62 253 253 GLU GLU B . n B 1 63 GLU 63 254 254 GLU GLU B . n B 1 64 GLY 64 255 255 GLY GLY B . n B 1 65 ALA 65 256 256 ALA ALA B . n B 1 66 MET 66 257 257 MET MET B . n B 1 67 LYS 67 258 258 LYS LYS B . n B 1 68 THR 68 259 259 THR THR B . n B 1 69 GLY 69 260 260 GLY GLY B . n B 1 70 TRP 70 261 261 TRP TRP B . n B 1 71 VAL 71 262 262 VAL VAL B . n B 1 72 LYS 72 263 263 LYS LYS B . n B 1 73 TYR 73 264 264 TYR TYR B . n B 1 74 LYS 74 265 265 LYS LYS B . n B 1 75 ASP 75 266 266 ASP ASP B . n B 1 76 THR 76 267 267 THR THR B . n B 1 77 TRP 77 268 268 TRP TRP B . n B 1 78 TYR 78 269 269 TYR TYR B . n B 1 79 TYR 79 270 270 TYR TYR B . n B 1 80 LEU 80 271 271 LEU LEU B . n B 1 81 ASP 81 272 272 ASP ASP B . n B 1 82 ALA 82 273 273 ALA ALA B . n B 1 83 LYS 83 274 274 LYS LYS B . n B 1 84 GLU 84 275 275 GLU GLU B . n B 1 85 GLY 85 276 276 GLY GLY B . n B 1 86 ALA 86 277 277 ALA ALA B . n B 1 87 MET 87 278 278 MET MET B . n B 1 88 VAL 88 279 279 VAL VAL B . n B 1 89 SER 89 280 280 SER SER B . n B 1 90 ASN 90 281 281 ASN ASN B . n B 1 91 ALA 91 282 282 ALA ALA B . n B 1 92 PHE 92 283 283 PHE PHE B . n B 1 93 ILE 93 284 284 ILE ILE B . n B 1 94 GLN 94 285 285 GLN GLN B . n B 1 95 SER 95 286 286 SER SER B . n B 1 96 ALA 96 287 287 ALA ALA B . n B 1 97 ASP 97 288 288 ASP ASP B . n B 1 98 GLY 98 289 289 GLY GLY B . n B 1 99 THR 99 290 290 THR THR B . n B 1 100 GLY 100 291 291 GLY GLY B . n B 1 101 TRP 101 292 292 TRP TRP B . n B 1 102 TYR 102 293 293 TYR TYR B . n B 1 103 TYR 103 294 294 TYR TYR B . n B 1 104 LEU 104 295 295 LEU LEU B . n B 1 105 LYS 105 296 296 LYS LYS B . n B 1 106 PRO 106 297 297 PRO PRO B . n B 1 107 ASP 107 298 298 ASP ASP B . n B 1 108 GLY 108 299 299 GLY GLY B . n B 1 109 THR 109 300 300 THR THR B . n B 1 110 LEU 110 301 301 LEU LEU B . n B 1 111 ALA 111 302 302 ALA ALA B . n B 1 112 ASP 112 303 303 ASP ASP B . n B 1 113 ARG 113 304 304 ARG ARG B . n B 1 114 PRO 114 305 305 PRO PRO B . n B 1 115 GLU 115 306 306 GLU GLU B . n B 1 116 PHE 116 307 307 PHE PHE B . n B 1 117 THR 117 308 308 THR THR B . n B 1 118 VAL 118 309 309 VAL VAL B . n B 1 119 GLU 119 310 310 GLU GLU B . n B 1 120 PRO 120 311 311 PRO PRO B . n B 1 121 ASP 121 312 312 ASP ASP B . n B 1 122 GLY 122 313 313 GLY GLY B . n B 1 123 LEU 123 314 314 LEU LEU B . n B 1 124 ILE 124 315 315 ILE ILE B . n B 1 125 THR 125 316 316 THR THR B . n B 1 126 VAL 126 317 317 VAL VAL B . n B 1 127 LYS 127 318 318 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TPT 1 1319 1319 TPT TPT A . D 3 CHT 1 1320 1320 CHT CHT A . E 3 CHT 1 1321 1321 CHT CHT A . F 3 CHT 1 1323 1323 CHT CHT A . G 4 DDQ 1 1319 1319 DDQ DDQ B . H 4 DDQ 1 1320 1320 DDQ DDQ B . I 3 CHT 1 1321 1321 CHT CHT B . J 3 CHT 1 1322 1322 CHT CHT B . K 5 HOH 1 2001 2001 HOH HOH A . K 5 HOH 2 2002 2002 HOH HOH A . K 5 HOH 3 2003 2003 HOH HOH A . K 5 HOH 4 2004 2004 HOH HOH A . K 5 HOH 5 2005 2005 HOH HOH A . K 5 HOH 6 2006 2006 HOH HOH A . K 5 HOH 7 2007 2007 HOH HOH A . K 5 HOH 8 2008 2008 HOH HOH A . K 5 HOH 9 2009 2009 HOH HOH A . K 5 HOH 10 2010 2010 HOH HOH A . K 5 HOH 11 2011 2011 HOH HOH A . K 5 HOH 12 2012 2012 HOH HOH A . K 5 HOH 13 2013 2013 HOH HOH A . K 5 HOH 14 2014 2014 HOH HOH A . K 5 HOH 15 2015 2015 HOH HOH A . K 5 HOH 16 2016 2016 HOH HOH A . K 5 HOH 17 2017 2017 HOH HOH A . K 5 HOH 18 2018 2018 HOH HOH A . K 5 HOH 19 2019 2019 HOH HOH A . K 5 HOH 20 2020 2020 HOH HOH A . K 5 HOH 21 2021 2021 HOH HOH A . K 5 HOH 22 2022 2022 HOH HOH A . K 5 HOH 23 2023 2023 HOH HOH A . K 5 HOH 24 2024 2024 HOH HOH A . K 5 HOH 25 2025 2025 HOH HOH A . K 5 HOH 26 2026 2026 HOH HOH A . K 5 HOH 27 2027 2027 HOH HOH A . K 5 HOH 28 2028 2028 HOH HOH A . K 5 HOH 29 2029 2029 HOH HOH A . L 5 HOH 1 2001 2001 HOH HOH B . L 5 HOH 2 2002 2002 HOH HOH B . L 5 HOH 3 2003 2003 HOH HOH B . L 5 HOH 4 2004 2004 HOH HOH B . L 5 HOH 5 2005 2005 HOH HOH B . L 5 HOH 6 2006 2006 HOH HOH B . L 5 HOH 7 2007 2007 HOH HOH B . L 5 HOH 8 2008 2008 HOH HOH B . L 5 HOH 9 2009 2009 HOH HOH B . L 5 HOH 10 2010 2010 HOH HOH B . L 5 HOH 11 2011 2011 HOH HOH B . L 5 HOH 12 2012 2012 HOH HOH B . L 5 HOH 13 2013 2013 HOH HOH B . L 5 HOH 14 2014 2014 HOH HOH B . L 5 HOH 15 2015 2015 HOH HOH B . L 5 HOH 16 2016 2016 HOH HOH B . L 5 HOH 17 2017 2017 HOH HOH B . L 5 HOH 18 2018 2018 HOH HOH B . L 5 HOH 19 2019 2019 HOH HOH B . L 5 HOH 20 2020 2020 HOH HOH B . L 5 HOH 21 2021 2021 HOH HOH B . L 5 HOH 22 2022 2022 HOH HOH B . L 5 HOH 23 2023 2023 HOH HOH B . L 5 HOH 24 2024 2024 HOH HOH B . L 5 HOH 25 2025 2025 HOH HOH B . L 5 HOH 26 2026 2026 HOH HOH B . L 5 HOH 27 2027 2027 HOH HOH B . L 5 HOH 28 2028 2028 HOH HOH B . L 5 HOH 29 2029 2029 HOH HOH B . L 5 HOH 30 2030 2030 HOH HOH B . L 5 HOH 31 2031 2031 HOH HOH B . L 5 HOH 32 2032 2032 HOH HOH B . L 5 HOH 33 2033 2033 HOH HOH B . L 5 HOH 34 2034 2034 HOH HOH B . L 5 HOH 35 2035 2035 HOH HOH B . L 5 HOH 36 2036 2036 HOH HOH B . L 5 HOH 37 2037 2037 HOH HOH B . L 5 HOH 38 2038 2038 HOH HOH B . L 5 HOH 39 2039 2039 HOH HOH B . L 5 HOH 40 2040 2040 HOH HOH B . L 5 HOH 41 2041 2041 HOH HOH B . L 5 HOH 42 2042 2042 HOH HOH B . L 5 HOH 43 2043 2043 HOH HOH B . L 5 HOH 44 2044 2044 HOH HOH B . L 5 HOH 45 2045 2045 HOH HOH B . L 5 HOH 46 2046 2046 HOH HOH B . L 5 HOH 47 2047 2047 HOH HOH B . L 5 HOH 48 2048 2048 HOH HOH B . L 5 HOH 49 2049 2049 HOH HOH B . L 5 HOH 50 2050 2050 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? L HOH . ? B HOH 2003 ? 6_555 PT1 ? C TPT . ? A TPT 1319 ? 1_555 N1 ? C TPT . ? A TPT 1319 ? 1_555 96.4 ? 2 O ? L HOH . ? B HOH 2003 ? 6_555 PT1 ? C TPT . ? A TPT 1319 ? 1_555 N2 ? C TPT . ? A TPT 1319 ? 1_555 127.6 ? 3 N1 ? C TPT . ? A TPT 1319 ? 1_555 PT1 ? C TPT . ? A TPT 1319 ? 1_555 N2 ? C TPT . ? A TPT 1319 ? 1_555 80.0 ? 4 O ? L HOH . ? B HOH 2003 ? 6_555 PT1 ? C TPT . ? A TPT 1319 ? 1_555 N3 ? C TPT . ? A TPT 1319 ? 1_555 102.6 ? 5 N1 ? C TPT . ? A TPT 1319 ? 1_555 PT1 ? C TPT . ? A TPT 1319 ? 1_555 N3 ? C TPT . ? A TPT 1319 ? 1_555 158.9 ? 6 N2 ? C TPT . ? A TPT 1319 ? 1_555 PT1 ? C TPT . ? A TPT 1319 ? 1_555 N3 ? C TPT . ? A TPT 1319 ? 1_555 81.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-29 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 SOLVE phasing . ? 3 SHARP phasing . ? 4 CNS refinement 1.0 ? 5 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE1 A GLU 306 ? ? 1_555 OE1 A GLU 306 ? ? 3_656 2.07 2 1 OE2 B GLU 200 ? ? 1_555 OE2 B GLU 200 ? ? 4_555 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 194 ? ? -173.37 131.44 2 1 ASP A 197 ? ? 60.59 87.82 3 1 LYS A 198 ? ? 178.77 168.31 4 1 GLU A 200 ? ? 176.55 107.55 5 1 ILE A 202 ? ? -52.57 101.81 6 1 ASN A 203 ? ? 21.62 94.24 7 1 TYR A 214 ? ? -48.39 162.80 8 1 ASP A 232 ? ? -64.19 -164.89 9 1 GLU A 253 ? ? -67.93 22.23 10 1 GLU A 254 ? ? -143.51 25.81 11 1 LYS A 265 ? ? 48.36 90.91 12 1 ASP A 266 ? ? 36.08 16.57 13 1 ASP B 197 ? ? 34.50 69.85 14 1 ASP B 210 ? ? -73.82 -155.63 15 1 ASP B 232 ? ? -65.37 -172.89 16 1 THR B 267 ? ? -167.76 114.38 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2,2':6',2''-TERPYRIDINE PLATINUM(II) Chloride ; TPT 3 'CHOLINE ION' CHT 4 DECYLAMINE-N,N-DIMETHYL-N-OXIDE DDQ 5 water HOH #