data_1HD9 # _entry.id 1HD9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HD9 pdb_00001hd9 10.2210/pdb1hd9/pdb PDBE EBI-4390 ? ? WWPDB D_1290004390 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HD9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-11-13 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brauer, A.B.E.' 1 'Kelly, G.' 2 'McBride, J.D.' 3 'Cooke, R.M.' 4 'Matthews, S.J.' 5 'Leatherbarrow, R.J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The Bowman-Birk Inhibitor Reactive Site Loop Sequence Represents an Independent Structural Beta-Hairpin Motif' J.Mol.Biol. 306 799 ? 2001 JMOBAK UK 0022-2836 0070 ? 11243789 10.1006/JMBI.2000.4410 1 'Selection of Human Elastase Inhibitors from a Conformationally-Constrained Combinatorial Peptide Library' Eur.J.Biochem. 266 403 ? 1999 EJBCAI IX 0014-2956 0262 ? 10561580 10.1046/J.1432-1327.1999.00867.X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brauer, A.B.E.' 1 ? primary 'Kelly, G.' 2 ? primary 'Mcbride, J.D.' 3 ? primary 'Cooke, R.M.' 4 ? primary 'Matthews, S.J.' 5 ? primary 'Leatherbarrow, R.J.' 6 ? 1 'Mcbride, J.D.' 7 ? 1 'Freeman, H.N.M.' 8 ? 1 'Leatherbarrow, R.J.' 9 ? # _cell.entry_id 1HD9 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HD9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'BOWMAN-BIRK INHIBITOR DERIVED PEPTIDE' _entity.formula_weight 1195.408 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'REACTIVE SITE LOOP I' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(NLE)CTASIPPQCY' _entity_poly.pdbx_seq_one_letter_code_can LCTASIPPQCY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 NLE n 1 2 CYS n 1 3 THR n 1 4 ALA n 1 5 SER n 1 6 ILE n 1 7 PRO n 1 8 PRO n 1 9 GLN n 1 10 CYS n 1 11 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1HD9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 1HD9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1HD9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1HD9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 TOCSY 1 2 1 COSY 1 3 1 NOESY 1 4 1 ROESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 3.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1HD9 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1HD9 _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED USING 1H-NMR. THE PAIRWISE RMSD FOR FAMILY OF 30 STRUCTURES IS 0.61+/ -0.19A FOR THE BACKBONE ATOMS AND 1.94+/-0.51A FOR ALL HEAVY ATOMS. ; # _pdbx_nmr_ensemble.entry_id 1HD9 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 30 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST ENERGY' # _pdbx_nmr_representative.entry_id 1HD9 _pdbx_nmr_representative.conformer_id 22 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version 3.851 _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1HD9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1HD9 _struct.title 'The Bowman-Birk Inhibitor Reactive Site Loop Sequence Represents an Independent Structural Beta-Hairpin Motif' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HD9 _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text 'PEPTIDE INHIBITOR, BOWMAN-BIRK INHIBITOR PROTEIN MIMETIC, HUMAN ELASTASE INHIBITOR, TYPE VIB BETA-TURN PEPTIDE, HYDROLASE INHIBITOR' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 2 A CYS 10 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale both ? A NLE 1 C ? ? ? 1_555 A CYS 2 N ? ? A NLE 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 1 0.01 2 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 2 0.12 3 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 3 0.06 4 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 4 -0.03 5 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 5 0.03 6 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 6 0.07 7 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 7 0.10 8 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 8 0.10 9 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 9 0.05 10 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 10 0.08 11 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 11 -0.03 12 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 12 0.00 13 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 13 0.12 14 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 14 0.05 15 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 15 -0.05 16 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 16 0.04 17 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 17 0.05 18 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 18 0.06 19 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 19 0.05 20 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 20 0.03 21 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 21 0.03 22 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 22 -0.02 23 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 23 -0.02 24 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 24 -0.01 25 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 25 0.03 26 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 26 0.13 27 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 27 -0.02 28 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 28 0.10 29 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 29 0.01 30 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 30 0.12 # _database_PDB_matrix.entry_id 1HD9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HD9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 NLE 1 1 1 NLE NLE A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 TYR 11 11 11 TYR TYR A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id NLE _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id NLE _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LEU _pdbx_struct_mod_residue.details NORLEUCINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-03-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-24 4 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' 'Source and taxonomy' 10 4 'Structure model' 'Atomic model' 11 4 'Structure model' 'Data collection' 12 4 'Structure model' 'Database references' 13 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' struct_conn 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_atom_id' 6 4 'Structure model' '_atom_site.label_atom_id' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_pdbx_database_status.status_code_mr' # _pdbx_entry_details.entry_id 1HD9 _pdbx_entry_details.compound_details 'DETAILS ABOUT PEPTIDE DESIGN ARE DESCRIBED IN REFERENCE 1' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 O A THR 3 ? ? H A SER 5 ? ? 1.56 2 6 O A THR 3 ? ? H A SER 5 ? ? 1.57 3 7 OE1 A GLN 9 ? ? H A CYS 10 ? ? 1.53 4 11 O A THR 3 ? ? H A SER 5 ? ? 1.56 5 16 H A THR 3 ? ? O A GLN 9 ? ? 1.46 6 17 O A THR 3 ? ? H A SER 5 ? ? 1.57 7 19 O A THR 3 ? ? H A SER 5 ? ? 1.57 8 23 O A THR 3 ? ? H A SER 5 ? ? 1.58 9 27 O A THR 3 ? ? H A SER 5 ? ? 1.57 10 28 O A THR 3 ? ? H A SER 5 ? ? 1.58 11 30 O A THR 3 ? ? H A SER 5 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 4 ALA A 4 ? ? -65.27 60.15 2 5 CYS A 10 ? ? -113.64 66.02 3 6 ALA A 4 ? ? -65.03 60.83 4 8 ALA A 4 ? ? -68.30 59.12 5 10 ALA A 4 ? ? -64.06 64.28 6 11 ALA A 4 ? ? -65.41 60.32 7 13 ALA A 4 ? ? -67.58 59.45 8 13 CYS A 10 ? ? -116.58 68.51 9 17 ALA A 4 ? ? -65.23 60.86 10 18 ALA A 4 ? ? -68.32 63.39 11 19 ALA A 4 ? ? -64.85 61.87 12 20 ALA A 4 ? ? -65.51 65.41 13 23 ALA A 4 ? ? -66.44 59.93 14 25 ALA A 4 ? ? -65.41 63.07 15 27 ALA A 4 ? ? -65.30 60.46 16 27 CYS A 10 ? ? -117.57 76.37 17 28 ALA A 4 ? ? -64.82 61.94 18 29 ALA A 4 ? ? -68.83 58.86 19 30 ALA A 4 ? ? -66.41 60.10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 CYS N N N N 14 CYS CA C N R 15 CYS C C N N 16 CYS O O N N 17 CYS CB C N N 18 CYS SG S N N 19 CYS OXT O N N 20 CYS H H N N 21 CYS H2 H N N 22 CYS HA H N N 23 CYS HB2 H N N 24 CYS HB3 H N N 25 CYS HG H N N 26 CYS HXT H N N 27 GLN N N N N 28 GLN CA C N S 29 GLN C C N N 30 GLN O O N N 31 GLN CB C N N 32 GLN CG C N N 33 GLN CD C N N 34 GLN OE1 O N N 35 GLN NE2 N N N 36 GLN OXT O N N 37 GLN H H N N 38 GLN H2 H N N 39 GLN HA H N N 40 GLN HB2 H N N 41 GLN HB3 H N N 42 GLN HG2 H N N 43 GLN HG3 H N N 44 GLN HE21 H N N 45 GLN HE22 H N N 46 GLN HXT H N N 47 ILE N N N N 48 ILE CA C N S 49 ILE C C N N 50 ILE O O N N 51 ILE CB C N S 52 ILE CG1 C N N 53 ILE CG2 C N N 54 ILE CD1 C N N 55 ILE OXT O N N 56 ILE H H N N 57 ILE H2 H N N 58 ILE HA H N N 59 ILE HB H N N 60 ILE HG12 H N N 61 ILE HG13 H N N 62 ILE HG21 H N N 63 ILE HG22 H N N 64 ILE HG23 H N N 65 ILE HD11 H N N 66 ILE HD12 H N N 67 ILE HD13 H N N 68 ILE HXT H N N 69 NLE N N N N 70 NLE CA C N S 71 NLE C C N N 72 NLE O O N N 73 NLE OXT O N N 74 NLE CB C N N 75 NLE CG C N N 76 NLE CD C N N 77 NLE CE C N N 78 NLE H H N N 79 NLE H2 H N N 80 NLE HA H N N 81 NLE HXT H N N 82 NLE HB2 H N N 83 NLE HB3 H N N 84 NLE HG2 H N N 85 NLE HG3 H N N 86 NLE HD2 H N N 87 NLE HD3 H N N 88 NLE HE1 H N N 89 NLE HE2 H N N 90 NLE HE3 H N N 91 PRO N N N N 92 PRO CA C N S 93 PRO C C N N 94 PRO O O N N 95 PRO CB C N N 96 PRO CG C N N 97 PRO CD C N N 98 PRO OXT O N N 99 PRO H H N N 100 PRO HA H N N 101 PRO HB2 H N N 102 PRO HB3 H N N 103 PRO HG2 H N N 104 PRO HG3 H N N 105 PRO HD2 H N N 106 PRO HD3 H N N 107 PRO HXT H N N 108 SER N N N N 109 SER CA C N S 110 SER C C N N 111 SER O O N N 112 SER CB C N N 113 SER OG O N N 114 SER OXT O N N 115 SER H H N N 116 SER H2 H N N 117 SER HA H N N 118 SER HB2 H N N 119 SER HB3 H N N 120 SER HG H N N 121 SER HXT H N N 122 THR N N N N 123 THR CA C N S 124 THR C C N N 125 THR O O N N 126 THR CB C N R 127 THR OG1 O N N 128 THR CG2 C N N 129 THR OXT O N N 130 THR H H N N 131 THR H2 H N N 132 THR HA H N N 133 THR HB H N N 134 THR HG1 H N N 135 THR HG21 H N N 136 THR HG22 H N N 137 THR HG23 H N N 138 THR HXT H N N 139 TYR N N N N 140 TYR CA C N S 141 TYR C C N N 142 TYR O O N N 143 TYR CB C N N 144 TYR CG C Y N 145 TYR CD1 C Y N 146 TYR CD2 C Y N 147 TYR CE1 C Y N 148 TYR CE2 C Y N 149 TYR CZ C Y N 150 TYR OH O N N 151 TYR OXT O N N 152 TYR H H N N 153 TYR H2 H N N 154 TYR HA H N N 155 TYR HB2 H N N 156 TYR HB3 H N N 157 TYR HD1 H N N 158 TYR HD2 H N N 159 TYR HE1 H N N 160 TYR HE2 H N N 161 TYR HH H N N 162 TYR HXT H N N 163 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 CYS N CA sing N N 13 CYS N H sing N N 14 CYS N H2 sing N N 15 CYS CA C sing N N 16 CYS CA CB sing N N 17 CYS CA HA sing N N 18 CYS C O doub N N 19 CYS C OXT sing N N 20 CYS CB SG sing N N 21 CYS CB HB2 sing N N 22 CYS CB HB3 sing N N 23 CYS SG HG sing N N 24 CYS OXT HXT sing N N 25 GLN N CA sing N N 26 GLN N H sing N N 27 GLN N H2 sing N N 28 GLN CA C sing N N 29 GLN CA CB sing N N 30 GLN CA HA sing N N 31 GLN C O doub N N 32 GLN C OXT sing N N 33 GLN CB CG sing N N 34 GLN CB HB2 sing N N 35 GLN CB HB3 sing N N 36 GLN CG CD sing N N 37 GLN CG HG2 sing N N 38 GLN CG HG3 sing N N 39 GLN CD OE1 doub N N 40 GLN CD NE2 sing N N 41 GLN NE2 HE21 sing N N 42 GLN NE2 HE22 sing N N 43 GLN OXT HXT sing N N 44 ILE N CA sing N N 45 ILE N H sing N N 46 ILE N H2 sing N N 47 ILE CA C sing N N 48 ILE CA CB sing N N 49 ILE CA HA sing N N 50 ILE C O doub N N 51 ILE C OXT sing N N 52 ILE CB CG1 sing N N 53 ILE CB CG2 sing N N 54 ILE CB HB sing N N 55 ILE CG1 CD1 sing N N 56 ILE CG1 HG12 sing N N 57 ILE CG1 HG13 sing N N 58 ILE CG2 HG21 sing N N 59 ILE CG2 HG22 sing N N 60 ILE CG2 HG23 sing N N 61 ILE CD1 HD11 sing N N 62 ILE CD1 HD12 sing N N 63 ILE CD1 HD13 sing N N 64 ILE OXT HXT sing N N 65 NLE N CA sing N N 66 NLE N H sing N N 67 NLE N H2 sing N N 68 NLE CA C sing N N 69 NLE CA CB sing N N 70 NLE CA HA sing N N 71 NLE C O doub N N 72 NLE C OXT sing N N 73 NLE OXT HXT sing N N 74 NLE CB CG sing N N 75 NLE CB HB2 sing N N 76 NLE CB HB3 sing N N 77 NLE CG CD sing N N 78 NLE CG HG2 sing N N 79 NLE CG HG3 sing N N 80 NLE CD CE sing N N 81 NLE CD HD2 sing N N 82 NLE CD HD3 sing N N 83 NLE CE HE1 sing N N 84 NLE CE HE2 sing N N 85 NLE CE HE3 sing N N 86 PRO N CA sing N N 87 PRO N CD sing N N 88 PRO N H sing N N 89 PRO CA C sing N N 90 PRO CA CB sing N N 91 PRO CA HA sing N N 92 PRO C O doub N N 93 PRO C OXT sing N N 94 PRO CB CG sing N N 95 PRO CB HB2 sing N N 96 PRO CB HB3 sing N N 97 PRO CG CD sing N N 98 PRO CG HG2 sing N N 99 PRO CG HG3 sing N N 100 PRO CD HD2 sing N N 101 PRO CD HD3 sing N N 102 PRO OXT HXT sing N N 103 SER N CA sing N N 104 SER N H sing N N 105 SER N H2 sing N N 106 SER CA C sing N N 107 SER CA CB sing N N 108 SER CA HA sing N N 109 SER C O doub N N 110 SER C OXT sing N N 111 SER CB OG sing N N 112 SER CB HB2 sing N N 113 SER CB HB3 sing N N 114 SER OG HG sing N N 115 SER OXT HXT sing N N 116 THR N CA sing N N 117 THR N H sing N N 118 THR N H2 sing N N 119 THR CA C sing N N 120 THR CA CB sing N N 121 THR CA HA sing N N 122 THR C O doub N N 123 THR C OXT sing N N 124 THR CB OG1 sing N N 125 THR CB CG2 sing N N 126 THR CB HB sing N N 127 THR OG1 HG1 sing N N 128 THR CG2 HG21 sing N N 129 THR CG2 HG22 sing N N 130 THR CG2 HG23 sing N N 131 THR OXT HXT sing N N 132 TYR N CA sing N N 133 TYR N H sing N N 134 TYR N H2 sing N N 135 TYR CA C sing N N 136 TYR CA CB sing N N 137 TYR CA HA sing N N 138 TYR C O doub N N 139 TYR C OXT sing N N 140 TYR CB CG sing N N 141 TYR CB HB2 sing N N 142 TYR CB HB3 sing N N 143 TYR CG CD1 doub Y N 144 TYR CG CD2 sing Y N 145 TYR CD1 CE1 sing Y N 146 TYR CD1 HD1 sing N N 147 TYR CD2 CE2 doub Y N 148 TYR CD2 HD2 sing N N 149 TYR CE1 CZ doub Y N 150 TYR CE1 HE1 sing N N 151 TYR CE2 CZ sing Y N 152 TYR CE2 HE2 sing N N 153 TYR CZ OH sing N N 154 TYR OH HH sing N N 155 TYR OXT HXT sing N N 156 #