HEADER OXIDOREDUCTASE(NAD(A)-CHOH(D)) 15-OCT-93 1HDY TITLE THREE-DIMENSIONAL STRUCTURES OF THREE HUMAN ALCOHOL DEHYDROGENASE TITLE 2 VARIANTS: CORRELATIONS WITH THEIR FUNCTIONAL DIFFERENCES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE(NAD(A)-CHOH(D)) EXPDTA X-RAY DIFFRACTION AUTHOR T.D.HURLEY,L.M.AMZEL REVDAT 4 07-FEB-24 1HDY 1 REMARK LINK REVDAT 3 29-NOV-17 1HDY 1 HELIX REVDAT 2 24-FEB-09 1HDY 1 VERSN REVDAT 1 31-JAN-94 1HDY 0 JRNL AUTH T.D.HURLEY,W.F.BOSRON,C.L.STONE,L.M.AMZEL JRNL TITL STRUCTURES OF THREE HUMAN BETA ALCOHOL DEHYDROGENASE JRNL TITL 2 VARIANTS. CORRELATIONS WITH THEIR FUNCTIONAL DIFFERENCES. JRNL REF J.MOL.BIOL. V. 239 415 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 8201622 JRNL DOI 10.1006/JMBI.1994.1382 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.D.HURLEY,L.M.AMZEL REMARK 1 TITL THE STRUCTURE OF HUMAN BETA-1 ALCOHOL DEHYDROGENASE: REMARK 1 TITL 2 CATALYTIC EFFECTS OF NON-ACTIVE SITE SUBSTITUTIONS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 88 8149 1991 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.220 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE DIMER OF HUMAN ALCOHOL REMARK 300 DEHYDROGENASE. THE TRANSFORMATION PRESENTED IN *MTRIX* REMARK 300 RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN REMARK 300 *B* WHEN APPLIED TO CHAIN *A*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C4N NAD B 377 N2 PYZ B 378 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 67 NE2 HIS A 67 CD2 -0.083 REMARK 500 HIS A 283 NE2 HIS A 283 CD2 -0.067 REMARK 500 HIS A 348 NE2 HIS A 348 CD2 -0.068 REMARK 500 HIS A 363 NE2 HIS A 363 CD2 -0.067 REMARK 500 HIS B 67 NE2 HIS B 67 CD2 -0.078 REMARK 500 HIS B 138 NE2 HIS B 138 CD2 -0.071 REMARK 500 HIS B 283 NE2 HIS B 283 CD2 -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 15 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 15 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TYR A 34 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 HIS A 67 CB - CG - CD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 CYS A 100 CA - CB - SG ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 128 CB - CG - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 MET A 209 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 TRP A 314 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 314 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 SER A 324 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ILE A 368 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 TRP B 15 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP B 15 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 CYS B 46 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 CYS B 282 CA - CB - SG ANGL. DEV. = 10.5 DEGREES REMARK 500 TRP B 314 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 314 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 148.63 -173.88 REMARK 500 LYS A 18 18.09 59.42 REMARK 500 HIS A 67 -22.59 -153.32 REMARK 500 PRO A 95 -179.44 -69.11 REMARK 500 LYS A 113 40.98 -76.14 REMARK 500 THR A 122 -165.33 -114.79 REMARK 500 PHE A 146 47.53 -83.02 REMARK 500 LEU A 166 -9.83 -59.71 REMARK 500 CYS A 174 -66.18 -145.12 REMARK 500 VAL A 186 -72.50 -84.19 REMARK 500 LEU A 200 59.80 -115.77 REMARK 500 ILE A 269 -65.89 -126.90 REMARK 500 CYS A 286 15.61 -153.71 REMARK 500 ILE A 368 -88.12 -112.57 REMARK 500 HIS B 67 -16.55 -156.60 REMARK 500 GLU B 74 -111.59 -101.74 REMARK 500 CYS B 97 9.16 -57.15 REMARK 500 ASN B 118 86.74 -164.23 REMARK 500 ASP B 125 5.85 -179.25 REMARK 500 THR B 143 -51.37 -123.89 REMARK 500 PHE B 146 59.85 -93.93 REMARK 500 ALA B 163 4.98 -67.75 REMARK 500 PRO B 165 90.47 -68.55 REMARK 500 ILE B 172 0.52 -63.36 REMARK 500 CYS B 174 -92.15 177.79 REMARK 500 THR B 178 -71.00 -66.52 REMARK 500 LYS B 188 64.60 64.29 REMARK 500 LEU B 200 76.50 -119.48 REMARK 500 ASP B 223 146.09 -171.92 REMARK 500 VAL B 268 55.25 -115.78 REMARK 500 ILE B 269 -51.26 -135.68 REMARK 500 CYS B 286 8.10 -170.93 REMARK 500 TYR B 319 11.53 53.74 REMARK 500 ILE B 355 -54.55 -29.55 REMARK 500 ILE B 368 -98.10 -111.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 111.6 REMARK 620 3 CYS A 174 SG 106.1 120.5 REMARK 620 4 PYZ A 378 N1 112.4 98.2 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 110.9 REMARK 620 3 CYS A 103 SG 115.6 106.3 REMARK 620 4 CYS A 111 SG 108.7 111.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 99.9 REMARK 620 3 CYS B 174 SG 87.4 118.9 REMARK 620 4 PYZ B 378 N1 110.4 100.1 133.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 107.1 REMARK 620 3 CYS B 103 SG 121.0 102.7 REMARK 620 4 CYS B 111 SG 103.9 112.9 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ZA2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: NAD REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: CAX REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ZB1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ZB2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: NBD REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: CBX REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYZ A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYZ B 378 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HDX RELATED DB: PDB REMARK 900 BETA-1 ISOZYME REMARK 900 RELATED ID: 1HDY RELATED DB: PDB REMARK 900 BETA-1 ISOZYME DBREF 1HDY A 1 374 UNP P00325 ADHB_HUMAN 2 375 DBREF 1HDY B 1 374 UNP P00325 ADHB_HUMAN 2 375 SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU VAL LYS LYS PRO PHE SER ILE GLU ASP VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA TYR GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA VAL GLY ILE CYS HIS THR ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 A 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL ASN VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA VAL SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 A 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ALA SER GLN SEQRES 24 A 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA VAL TYR GLY GLY PHE LYS SER LYS SEQRES 26 A 374 GLU GLY ILE PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE SER LEU ASP ALA LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU HIS SER SEQRES 29 A 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU VAL LYS LYS PRO PHE SER ILE GLU ASP VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA TYR GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA VAL GLY ILE CYS HIS THR ASP ASP HIS VAL SEQRES 5 B 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 B 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 B 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 B 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL ASN VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA VAL SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 B 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 B 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ALA SER GLN SEQRES 24 B 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA VAL TYR GLY GLY PHE LYS SER LYS SEQRES 26 B 374 GLU GLY ILE PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE SER LEU ASP ALA LEU ILE THR HIS VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU HIS SER SEQRES 29 B 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE HET ZN A 375 1 HET ZN A 376 1 HET NAD A 377 44 HET PYZ A 378 6 HET ZN B 375 1 HET ZN B 376 1 HET CL B 601 1 HET NAD B 377 44 HET PYZ B 378 6 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PYZ 4-IODOPYRAZOLE HETNAM CL CHLORIDE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 PYZ 2(C3 H3 I N2) FORMUL 9 CL CL 1- FORMUL 12 HOH *105(H2 O) HELIX 1 H1A HIS A 47 SER A 54 1 8 HELIX 2 H2A CYS A 170 ASN A 185 1 16 HELIX 3 H3A GLY A 201 LYS A 212 1 12 HELIX 4 H4A LYS A 226 GLU A 234 1 9 HELIX 5 H5A ILE A 250 MET A 257 1 8 HELIX 6 H6A LEU A 272 CYS A 282 1 11 HELIX 7 H7A MET A 306 THR A 310 5 5 HELIX 8 H8A LYS A 325 ALA A 337 1 13 HELIX 9 H9A ILE A 355 SER A 364 1 10 HELIX 10 H1B HIS B 47 SER B 54 1 8 HELIX 11 H2B CYS B 170 ASN B 185 1 16 HELIX 12 H3B GLY B 201 LYS B 212 1 12 HELIX 13 H4B LYS B 226 GLU B 234 1 9 HELIX 14 H5B ILE B 250 MET B 257 1 8 HELIX 15 H6B LEU B 272 CYS B 282 1 11 HELIX 16 H7B MET B 306 THR B 310 5 5 HELIX 17 H8B LYS B 325 ALA B 337 1 13 HELIX 18 H9B ILE B 355 SER B 364 1 10 SHEET 1 S1A 6 ALA A 156 ILE A 160 0 SHEET 2 S1A 6 LYS A 88 LEU A 92 -1 N LEU A 92 O ALA A 156 SHEET 3 S1A 6 GLU A 68 ILE A 72 -1 O GLY A 71 N VAL A 89 SHEET 4 S1A 6 LYS A 39 ILE A 45 -1 N ALA A 42 O ALA A 70 SHEET 5 S1A 6 ARG A 369 PHE A 374 -1 O THR A 370 N ILE A 45 SHEET 6 S1A 6 THR A 347 PRO A 351 1 O LEU A 350 N THR A 373 SHEET 1 S2A 3 ILE A 72 VAL A 76 0 SHEET 2 S2A 3 TYR A 34 LYS A 39 -1 N ARG A 37 O SER A 75 SHEET 3 S2A 3 TYR A 149 GLU A 154 -1 N GLU A 154 O TYR A 34 SHEET 1 S3A 3 VAL A 6 VAL A 13 0 SHEET 2 S3A 3 SER A 22 ALA A 29 -1 O VAL A 28 N ILE A 7 SHEET 3 S3A 3 ARG A 129 THR A 131 -1 O ARG A 129 N ALA A 29 SHEET 1 S4A 4 SER A 22 GLU A 24 0 SHEET 2 S4A 4 ALA A 12 LEU A 14 -1 O VAL A 13 N SER A 22 SHEET 3 S4A 4 PRO A 62 LEU A 65 -1 O VAL A 63 N LEU A 14 SHEET 4 S4A 4 ILE A 137 PHE A 140 1 N PHE A 140 O ILE A 64 SHEET 1 S5A 6 THR A 238 ASN A 242 0 SHEET 2 S5A 6 ALA A 217 ASP A 223 1 N ALA A 221 O GLU A 239 SHEET 3 S5A 6 SER A 193 GLY A 199 1 N GLY A 199 O VAL A 222 SHEET 4 S5A 6 ASP A 263 VAL A 268 1 N PHE A 264 O THR A 194 SHEET 5 S5A 6 GLY A 287 VAL A 292 1 N VAL A 292 O GLU A 267 SHEET 6 S5A 6 ARG A 312 ALA A 317 1 N THR A 313 O GLY A 287 SHEET 1 S1B 6 ALA B 156 ILE B 160 0 SHEET 2 S1B 6 LYS B 88 LEU B 92 -1 N LEU B 92 O ALA B 156 SHEET 3 S1B 6 GLU B 68 ILE B 72 -1 O GLY B 71 N VAL B 89 SHEET 4 S1B 6 LYS B 39 ILE B 45 -1 N ALA B 42 O ALA B 70 SHEET 5 S1B 6 ARG B 369 PHE B 374 -1 O THR B 370 N ILE B 45 SHEET 6 S1B 6 THR B 347 PRO B 351 1 O LEU B 350 N THR B 373 SHEET 1 S2B 3 ILE B 72 VAL B 76 0 SHEET 2 S2B 3 TYR B 34 LYS B 39 -1 N ARG B 37 O SER B 75 SHEET 3 S2B 3 TYR B 149 GLU B 154 -1 N GLU B 154 O TYR B 34 SHEET 1 S3B 3 VAL B 6 VAL B 13 0 SHEET 2 S3B 3 SER B 22 ALA B 29 -1 O VAL B 28 N ILE B 7 SHEET 3 S3B 3 ARG B 129 THR B 131 -1 O ARG B 129 N ALA B 29 SHEET 1 S4B 4 SER B 22 GLU B 24 0 SHEET 2 S4B 4 ALA B 12 LEU B 14 -1 O VAL B 13 N SER B 22 SHEET 3 S4B 4 PRO B 62 LEU B 65 -1 O VAL B 63 N LEU B 14 SHEET 4 S4B 4 ILE B 137 PHE B 140 1 N PHE B 140 O ILE B 64 SHEET 1 S5B 6 THR B 238 ASN B 242 0 SHEET 2 S5B 6 ALA B 217 ASP B 223 1 N ALA B 221 O GLU B 239 SHEET 3 S5B 6 SER B 193 GLY B 199 1 N GLY B 199 O VAL B 222 SHEET 4 S5B 6 ASP B 263 VAL B 268 1 N PHE B 264 O THR B 194 SHEET 5 S5B 6 GLY B 287 VAL B 292 1 N VAL B 292 O GLU B 267 SHEET 6 S5B 6 ARG B 312 ALA B 317 1 N THR B 313 O GLY B 287 LINK C4N NAD A 377 N2 PYZ A 378 1555 1555 1.94 LINK SG CYS A 46 ZN ZN A 376 1555 1555 2.30 LINK NE2 HIS A 67 ZN ZN A 376 1555 1555 2.22 LINK SG CYS A 97 ZN ZN A 375 1555 1555 2.31 LINK SG CYS A 100 ZN ZN A 375 1555 1555 2.23 LINK SG CYS A 103 ZN ZN A 375 1555 1555 2.33 LINK SG CYS A 111 ZN ZN A 375 1555 1555 2.33 LINK SG CYS A 174 ZN ZN A 376 1555 1555 2.06 LINK ZN ZN A 376 N1 PYZ A 378 1555 1555 2.07 LINK SG CYS B 46 ZN ZN B 376 1555 1555 2.41 LINK NE2 HIS B 67 ZN ZN B 376 1555 1555 2.22 LINK SG CYS B 97 ZN ZN B 375 1555 1555 2.29 LINK SG CYS B 100 ZN ZN B 375 1555 1555 2.28 LINK SG CYS B 103 ZN ZN B 375 1555 1555 2.22 LINK SG CYS B 111 ZN ZN B 375 1555 1555 2.18 LINK SG CYS B 174 ZN ZN B 376 1555 1555 1.96 LINK ZN ZN B 376 N1 PYZ B 378 1555 1555 1.97 CISPEP 1 LEU A 61 PRO A 62 0 -8.05 CISPEP 2 LEU B 61 PRO B 62 0 -7.33 SITE 1 ZA1 4 CYS A 46 HIS A 67 CYS A 174 ZN A 376 SITE 1 ZA2 5 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 2 ZA2 5 ZN A 375 SITE 1 NAD 1 NAD A 377 SITE 1 CAX 1 PYZ A 378 SITE 1 ZB1 4 CYS B 46 HIS B 67 CYS B 174 ZN B 376 SITE 1 ZB2 5 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 2 ZB2 5 ZN B 375 SITE 1 NBD 1 NAD B 377 SITE 1 CBX 1 PYZ B 378 SITE 1 AC1 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC2 5 CYS A 46 HIS A 67 CYS A 174 NAD A 377 SITE 2 AC2 5 PYZ A 378 SITE 1 AC3 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC4 5 CYS B 46 HIS B 67 CYS B 174 NAD B 377 SITE 2 AC4 5 PYZ B 378 SITE 1 AC5 1 ARG B 128 SITE 1 AC6 28 CYS A 46 HIS A 47 THR A 48 HIS A 51 SITE 2 AC6 28 CYS A 174 THR A 178 GLY A 201 GLY A 202 SITE 3 AC6 28 VAL A 203 ASP A 223 ILE A 224 LYS A 228 SITE 4 AC6 28 VAL A 268 ILE A 269 ARG A 271 VAL A 292 SITE 5 AC6 28 VAL A 294 ALA A 317 TYR A 319 LEU A 362 SITE 6 AC6 28 ARG A 369 ZN A 376 PYZ A 378 HOH A 382 SITE 7 AC6 28 HOH A 383 HOH A 384 HOH A 385 LEU B 309 SITE 1 AC7 7 CYS A 46 THR A 48 HIS A 67 PHE A 93 SITE 2 AC7 7 CYS A 174 ZN A 376 NAD A 377 SITE 1 AC8 26 CYS B 46 HIS B 47 THR B 48 HIS B 51 SITE 2 AC8 26 CYS B 174 THR B 178 GLY B 199 LEU B 200 SITE 3 AC8 26 GLY B 201 GLY B 202 VAL B 203 ASP B 223 SITE 4 AC8 26 ILE B 224 LYS B 228 VAL B 268 ILE B 269 SITE 5 AC8 26 ARG B 271 VAL B 292 GLY B 293 VAL B 294 SITE 6 AC8 26 ALA B 317 TYR B 319 ARG B 369 ZN B 376 SITE 7 AC8 26 PYZ B 378 HOH B 605 SITE 1 AC9 7 CYS B 46 THR B 48 HIS B 67 PHE B 93 SITE 2 AC9 7 CYS B 174 ZN B 376 NAD B 377 CRYST1 54.360 44.890 93.850 92.65 103.21 68.77 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018396 -0.007146 0.004609 0.00000 SCALE2 0.000000 0.023899 -0.000962 0.00000 SCALE3 0.000000 0.000000 0.010954 0.00000 MTRIX1 1 0.081400 0.979600 -0.185000 -10.13100 1 MTRIX2 1 0.977900 -0.114100 -0.175000 -6.27200 1 MTRIX3 1 -0.192100 -0.165700 -0.967000 -90.92700 1