HEADER HYDROLASE(XYLAN DEGRADATION) 22-NOV-00 1HEH TITLE C-TERMINAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE 11A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE D; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: XYLAN BINDING DOMAIN 2; COMPND 5 SYNONYM: XYLANASE D, CBM2B-2, XBD2; COMPND 6 EC: 3.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLULOMONAS FIMI; SOURCE 3 ORGANISM_TAXID: 1708; SOURCE 4 STRAIN: JM83; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE(XYLAN DEGRADATION), HYDROLASE, XYLAN BINDING DOMAIN, KEYWDS 2 XYLANASE, BETA-SHEET EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR P.J.SIMPSON,X.HEFANG,D.N.BOLAM,P.WHITE,S.M.HANCOCK,H.J.GILBERT, AUTHOR 2 M.P.WILLIAMSON REVDAT 4 14-JUN-23 1HEH 1 REMARK REVDAT 3 15-JAN-20 1HEH 1 REMARK REVDAT 2 24-FEB-09 1HEH 1 VERSN REVDAT 1 10-MAY-01 1HEH 0 JRNL AUTH D.N.BOLAM,H.XIE,P.WHITE,P.J.SIMPSON,S.M.HANCOCK, JRNL AUTH 2 M.P.WILLIAMSON,H.J.GILBERT JRNL TITL EVIDENCE FOR SYNERGY BETWEEN FAMILY 2B CARBOHYDRATE BINDING JRNL TITL 2 MODULES IN CELLULOMONAS FIMI XYLANASE 11A JRNL REF BIOCHEMISTRY V. 40 2468 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11327868 JRNL DOI 10.1021/BI002564L REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: YASAP PROTOCOL. DETAILS IN THE JRNL REMARK 3 CITATION. REMARK 4 REMARK 4 1HEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1290005577. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : SODIUM PHOSPHATE 50 MM, SODIUM REMARK 210 AZIDE 10 MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TOCSY; DQF-COSY; NOESY; E.COSY; REMARK 210 HSQC; NOESY-HMQC; TOCSY-HMQC; REMARK 210 HNHA; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97.0 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/ REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MINIMISED AVERAGE FROM BEST 23 OUT OF 50. THE STRUCTURE REMARK 210 WAS DETERMINED USING HETERONUCLEAR NMR SPECTROSCOPY ON A REMARK 210 UNIFORMLY 15N-LABELLED SAMPLE OF XBD2 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENDOHYDROLYSIS OF 1,4-BETA-D-XYLOSIDIC LINKAGES IN XYLANS. REMARK 400 BELONGS TO CELLULASE FAMILY G (FAMILY 11 OF GLYCOSYL REMARK 400 HYDROLASES). REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 568 161.58 -40.22 REMARK 500 SER C 581 -70.67 -101.64 REMARK 500 SER C 583 46.92 -85.43 REMARK 500 VAL C 587 32.52 -160.03 REMARK 500 LEU C 592 -167.93 -65.02 REMARK 500 ALA C 604 168.23 162.94 REMARK 500 SER C 609 22.83 -156.93 REMARK 500 SER C 610 108.47 169.89 REMARK 500 ASN C 618 20.98 -152.25 REMARK 500 SER C 620 113.67 164.17 REMARK 500 ASN C 631 29.60 43.06 REMARK 500 SER C 633 -148.57 -88.42 REMARK 500 SER C 634 -112.93 -171.50 REMARK 500 CYS C 641 69.62 -160.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 566 0.22 SIDE CHAIN REMARK 500 ARG C 573 0.14 SIDE CHAIN REMARK 500 ARG C 616 0.31 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HEJ RELATED DB: PDB REMARK 900 C-TERMINAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE 11A REMARK 900 (5 STRUCTURES) REMARK 900 RELATED ID: 1E5B RELATED DB: PDB REMARK 900 INTERNAL XYLAN BINDING DOMAIN FROM C. FIMI XYN10A, R262G MUTANT REMARK 900 RELATED ID: 1E5C RELATED DB: PDB REMARK 900 INTERNAL XYLAN BINDING DOMAIN FROM C. FIMI XYN10A, R262G MUTANT REMARK 900 RELATED ID: 1XBD RELATED DB: PDB REMARK 900 INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, REMARK 900 NMR, 5 STRUCTURES REMARK 900 RELATED ID: 2XBD RELATED DB: PDB REMARK 900 INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, REMARK 900 NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 4900 RELATED DB: BMRB DBREF 1HEH C 557 644 UNP P54865 XYND_CELFI 557 644 SEQRES 1 C 88 THR GLY SER CYS SER VAL SER ALA VAL ARG GLY GLU GLU SEQRES 2 C 88 TRP ALA ASP ARG PHE ASN VAL THR TYR SER VAL SER GLY SEQRES 3 C 88 SER SER SER TRP VAL VAL THR LEU GLY LEU ASN GLY GLY SEQRES 4 C 88 GLN SER VAL GLN SER SER TRP ASN ALA ALA LEU THR GLY SEQRES 5 C 88 SER SER GLY THR VAL THR ALA ARG PRO ASN GLY SER GLY SEQRES 6 C 88 ASN SER PHE GLY VAL THR PHE TYR LYS ASN GLY SER SER SEQRES 7 C 88 ALA THR PRO GLY ALA THR CYS ALA THR GLY SHEET 1 A 4 VAL C 562 GLU C 568 0 SHEET 2 A 4 ARG C 573 SER C 581 -1 N SER C 579 O SER C 563 SHEET 3 A 4 SER C 623 TYR C 629 -1 O PHE C 624 N TYR C 578 SHEET 4 A 4 VAL C 598 TRP C 602 -1 O TRP C 602 N GLY C 625 SHEET 1 B 4 GLY C 638 ALA C 642 0 SHEET 2 B 4 VAL C 587 LEU C 592 -1 N THR C 589 O THR C 640 SHEET 3 B 4 VAL C 613 ARG C 616 -1 O VAL C 613 N LEU C 590 SHEET 4 B 4 ALA C 605 GLY C 608 -1 O ALA C 605 N ARG C 616 SSBOND 1 CYS C 560 CYS C 641 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000