data_1HFA # _entry.id 1HFA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HFA PDBE EBI-5607 WWPDB D_1290005607 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1HF8 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CALM-N N-TERMINAL DOMAIN OF CLATHRIN ASSEMBLY LYMPHOID MYELOID LEUKAEMIA PROTEIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HFA _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-11-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ford, M.G.J.' 1 'Evans, P.R.' 2 'McMahon, H.T.' 3 # _citation.id primary _citation.title 'Simultaneous Binding of Ptdins(4,5)P2 and Clathrin by Ap180 in the Nucleation of Clathrin Lattices on Membranes' _citation.journal_abbrev Science _citation.journal_volume 291 _citation.page_first 1051 _citation.page_last ? _citation.year 2001 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11161218 _citation.pdbx_database_id_DOI 10.1126/SCIENCE.291.5506.1051 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ford, M.G.J.' 1 primary 'Pearse, B.M.F.' 2 primary 'Higgins, M.K.' 3 primary 'Vallis, Y.' 4 primary 'Owen, D.J.' 5 primary 'Gibson, A.' 6 primary 'Hopkins, C.R.' 7 primary 'Evans, P.R.' 8 primary 'Mcmahon, H.T.' 9 # _cell.entry_id 1HFA _cell.length_a 77.725 _cell.length_b 77.725 _cell.length_c 122.265 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HFA _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CLATHRIN ASSEMBLY PROTEIN SHORT FORM' 32865.789 1 ? ? 'N-TERMINAL DOMAIN' ? 2 non-polymer syn ;[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate ; 746.566 1 ? ? ? ? 3 water nat water 18.015 128 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AP180-2, CALM-N' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLI TTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKF LTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK ; _entity_poly.pdbx_seq_one_letter_code_can ;MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLI TTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKF LTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLY n 1 4 GLN n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 ASP n 1 9 ARG n 1 10 ILE n 1 11 THR n 1 12 ALA n 1 13 ALA n 1 14 GLN n 1 15 HIS n 1 16 SER n 1 17 VAL n 1 18 THR n 1 19 GLY n 1 20 SER n 1 21 ALA n 1 22 VAL n 1 23 SER n 1 24 LYS n 1 25 THR n 1 26 VAL n 1 27 CYS n 1 28 LYS n 1 29 ALA n 1 30 THR n 1 31 THR n 1 32 HIS n 1 33 GLU n 1 34 ILE n 1 35 MET n 1 36 GLY n 1 37 PRO n 1 38 LYS n 1 39 LYS n 1 40 LYS n 1 41 HIS n 1 42 LEU n 1 43 ASP n 1 44 TYR n 1 45 LEU n 1 46 ILE n 1 47 GLN n 1 48 CYS n 1 49 THR n 1 50 ASN n 1 51 GLU n 1 52 MET n 1 53 ASN n 1 54 VAL n 1 55 ASN n 1 56 ILE n 1 57 PRO n 1 58 GLN n 1 59 LEU n 1 60 ALA n 1 61 ASP n 1 62 SER n 1 63 LEU n 1 64 PHE n 1 65 GLU n 1 66 ARG n 1 67 THR n 1 68 THR n 1 69 ASN n 1 70 SER n 1 71 SER n 1 72 TRP n 1 73 VAL n 1 74 VAL n 1 75 VAL n 1 76 PHE n 1 77 LYS n 1 78 SER n 1 79 LEU n 1 80 ILE n 1 81 THR n 1 82 THR n 1 83 HIS n 1 84 HIS n 1 85 LEU n 1 86 MET n 1 87 VAL n 1 88 TYR n 1 89 GLY n 1 90 ASN n 1 91 GLU n 1 92 ARG n 1 93 PHE n 1 94 ILE n 1 95 GLN n 1 96 TYR n 1 97 LEU n 1 98 ALA n 1 99 SER n 1 100 ARG n 1 101 ASN n 1 102 THR n 1 103 LEU n 1 104 PHE n 1 105 ASN n 1 106 LEU n 1 107 SER n 1 108 ASN n 1 109 PHE n 1 110 LEU n 1 111 ASP n 1 112 LYS n 1 113 SER n 1 114 GLY n 1 115 LEU n 1 116 GLN n 1 117 GLY n 1 118 TYR n 1 119 ASP n 1 120 MET n 1 121 SER n 1 122 THR n 1 123 PHE n 1 124 ILE n 1 125 ARG n 1 126 ARG n 1 127 TYR n 1 128 SER n 1 129 ARG n 1 130 TYR n 1 131 LEU n 1 132 ASN n 1 133 GLU n 1 134 LYS n 1 135 ALA n 1 136 VAL n 1 137 SER n 1 138 TYR n 1 139 ARG n 1 140 GLN n 1 141 VAL n 1 142 ALA n 1 143 PHE n 1 144 ASP n 1 145 PHE n 1 146 THR n 1 147 LYS n 1 148 VAL n 1 149 LYS n 1 150 ARG n 1 151 GLY n 1 152 ALA n 1 153 ASP n 1 154 GLY n 1 155 VAL n 1 156 MET n 1 157 ARG n 1 158 THR n 1 159 MET n 1 160 ASN n 1 161 THR n 1 162 GLU n 1 163 LYS n 1 164 LEU n 1 165 LEU n 1 166 LYS n 1 167 THR n 1 168 VAL n 1 169 PRO n 1 170 ILE n 1 171 ILE n 1 172 GLN n 1 173 ASN n 1 174 GLN n 1 175 MET n 1 176 ASP n 1 177 ALA n 1 178 LEU n 1 179 LEU n 1 180 ASP n 1 181 PHE n 1 182 ASN n 1 183 VAL n 1 184 ASN n 1 185 SER n 1 186 ASN n 1 187 GLU n 1 188 LEU n 1 189 THR n 1 190 ASN n 1 191 GLY n 1 192 VAL n 1 193 ILE n 1 194 ASN n 1 195 ALA n 1 196 ALA n 1 197 PHE n 1 198 MET n 1 199 LEU n 1 200 LEU n 1 201 PHE n 1 202 LYS n 1 203 ASP n 1 204 ALA n 1 205 ILE n 1 206 ARG n 1 207 LEU n 1 208 PHE n 1 209 ALA n 1 210 ALA n 1 211 TYR n 1 212 ASN n 1 213 GLU n 1 214 GLY n 1 215 ILE n 1 216 ILE n 1 217 ASN n 1 218 LEU n 1 219 LEU n 1 220 GLU n 1 221 LYS n 1 222 TYR n 1 223 PHE n 1 224 ASP n 1 225 MET n 1 226 LYS n 1 227 LYS n 1 228 ASN n 1 229 GLN n 1 230 CYS n 1 231 LYS n 1 232 GLU n 1 233 GLY n 1 234 LEU n 1 235 ASP n 1 236 ILE n 1 237 TYR n 1 238 LYS n 1 239 LYS n 1 240 PHE n 1 241 LEU n 1 242 THR n 1 243 ARG n 1 244 MET n 1 245 THR n 1 246 ARG n 1 247 ILE n 1 248 SER n 1 249 GLU n 1 250 PHE n 1 251 LEU n 1 252 LYS n 1 253 VAL n 1 254 ALA n 1 255 GLU n 1 256 GLN n 1 257 VAL n 1 258 GLY n 1 259 ILE n 1 260 ASP n 1 261 ARG n 1 262 GLY n 1 263 ASP n 1 264 ILE n 1 265 PRO n 1 266 ASP n 1 267 LEU n 1 268 SER n 1 269 GLN n 1 270 ALA n 1 271 PRO n 1 272 SER n 1 273 SER n 1 274 LEU n 1 275 LEU n 1 276 ASP n 1 277 ALA n 1 278 LEU n 1 279 GLU n 1 280 GLN n 1 281 HIS n 1 282 LEU n 1 283 ALA n 1 284 SER n 1 285 LEU n 1 286 GLU n 1 287 GLY n 1 288 LYS n 1 289 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'NORWAY RAT' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene CALM-N _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX4T2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O55011 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O55011 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1HFA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 289 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O55011 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 289 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 289 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PIO non-polymer . ;[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate ; 'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 'C25 H49 O19 P3' 746.566 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HFA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_percent_sol 60 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M HEPES, PH 7.5, 12% PEG 8K, 8% ETHYLENE GLYCOL, CRYSTALS SOAKED IN 1MM LIGAND FOR 1 HOUR' # _diffrn.id 1 _diffrn.ambient_temp 293.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2000-03-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HFA _reflns.observed_criterion_sigma_I 6.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 66.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 26075 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.10300 _reflns.pdbx_Rsym_value 0.10400 _reflns.pdbx_netI_over_sigmaI 14.3000 _reflns.B_iso_Wilson_estimate 43.00 _reflns.pdbx_redundancy 7.100 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.15300 _reflns_shell.pdbx_Rsym_value 1.15300 _reflns_shell.meanI_over_sigI_obs 1.500 _reflns_shell.pdbx_redundancy 7.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HFA _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24692 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 65.94 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.230 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1322 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 43.71 _refine.aniso_B[1][1] 1.54000 _refine.aniso_B[2][2] 1.54000 _refine.aniso_B[3][3] -3.07000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1HF8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.152 _refine.pdbx_overall_ESU_R_Free 0.142 _refine.overall_SU_ML 0.195 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.171 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2114 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 2266 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 65.94 # _struct.entry_id 1HFA _struct.title 'CALM-N N-terminal domain of clathrin assembly lymphoid myeloid leukaemia protein, PI(4,5)P2 complex' _struct.pdbx_descriptor 'CLATHRIN ASSEMBLY PROTEIN SHORT FORM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HFA _struct_keywords.pdbx_keywords ENDOCYTOSIS _struct_keywords.text 'ENDOCYTOSIS, ADAPTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;BIOLOGICAL_UNIT: MONOMERTHIS DIMERIC ARRANGEMENT IS THE RESULT OF TIGHT CRYSTALPACKING. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 19 ? THR A 30 ? GLY A 19 THR A 30 1 ? 12 HELX_P HELX_P2 2 LYS A 38 ? GLU A 51 ? LYS A 38 GLU A 51 1 ? 14 HELX_P HELX_P3 3 ASN A 55 ? THR A 67 ? ASN A 55 THR A 67 1 ? 13 HELX_P HELX_P4 4 SER A 71 ? GLY A 89 ? SER A 71 GLY A 89 1 ? 19 HELX_P HELX_P5 5 ASN A 90 ? ARG A 100 ? ASN A 90 ARG A 100 1 ? 11 HELX_P HELX_P6 6 GLY A 114 ? ALA A 142 ? GLY A 114 ALA A 142 1 ? 29 HELX_P HELX_P7 7 ASN A 160 ? ASP A 180 ? ASN A 160 ASP A 180 1 ? 21 HELX_P HELX_P8 8 ASN A 184 ? LEU A 188 ? ASN A 184 LEU A 188 5 ? 5 HELX_P HELX_P9 9 ASN A 190 ? TYR A 222 ? ASN A 190 TYR A 222 1 ? 33 HELX_P HELX_P10 10 ASN A 228 ? GLY A 258 ? ASN A 228 GLY A 258 1 ? 31 HELX_P HELX_P11 11 ASP A 260 ? ILE A 264 ? ASP A 260 ILE A 264 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE PIO A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS A 38 ? LYS A 38 . ? 1_555 ? 2 AC1 3 LYS A 40 ? LYS A 40 . ? 1_555 ? 3 AC1 3 HIS A 41 ? HIS A 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 1HFA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HFA _atom_sites.fract_transf_matrix[1][1] 0.012866 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012866 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008179 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 GLN 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 THR 7 7 ? ? ? A . n A 1 8 ASP 8 8 ? ? ? A . n A 1 9 ARG 9 9 ? ? ? A . n A 1 10 ILE 10 10 ? ? ? A . n A 1 11 THR 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 GLN 14 14 ? ? ? A . n A 1 15 HIS 15 15 ? ? ? A . n A 1 16 SER 16 16 ? ? ? A . n A 1 17 VAL 17 17 ? ? ? A . n A 1 18 THR 18 18 ? ? ? A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 TYR 130 130 130 TYR TYR A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 MET 156 156 156 MET MET A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 MET 159 159 159 MET MET A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 MET 175 175 175 MET MET A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 ASN 194 194 194 ASN ASN A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 MET 198 198 198 MET MET A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 ASN 212 212 212 ASN ASN A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 ILE 216 216 216 ILE ILE A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 ASP 224 224 224 ASP ASP A . n A 1 225 MET 225 225 225 MET MET A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 CYS 230 230 230 CYS CYS A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 TYR 237 237 237 TYR TYR A . n A 1 238 LYS 238 238 238 LYS LYS A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 PHE 240 240 240 PHE PHE A . n A 1 241 LEU 241 241 241 LEU LEU A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 ARG 243 243 243 ARG ARG A . n A 1 244 MET 244 244 244 MET MET A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 ARG 246 246 246 ARG ARG A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 SER 248 248 248 SER SER A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 LEU 251 251 251 LEU LEU A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 VAL 253 253 253 VAL VAL A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 GLU 255 255 255 GLU GLU A . n A 1 256 GLN 256 256 256 GLN GLN A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 GLY 258 258 258 GLY GLY A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ASP 260 260 260 ASP ASP A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 GLY 262 262 262 GLY GLY A . n A 1 263 ASP 263 263 263 ASP ASP A . n A 1 264 ILE 264 264 264 ILE ILE A . n A 1 265 PRO 265 265 265 PRO PRO A . n A 1 266 ASP 266 266 266 ASP ASP A . n A 1 267 LEU 267 267 267 LEU LEU A . n A 1 268 SER 268 268 268 SER SER A . n A 1 269 GLN 269 269 269 GLN GLN A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 PRO 271 271 271 PRO PRO A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 LEU 274 274 274 LEU LEU A . n A 1 275 LEU 275 275 275 LEU LEU A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 GLU 279 279 279 GLU GLU A . n A 1 280 GLN 280 280 280 GLN GLN A . n A 1 281 HIS 281 281 281 HIS HIS A . n A 1 282 LEU 282 282 ? ? ? A . n A 1 283 ALA 283 283 ? ? ? A . n A 1 284 SER 284 284 ? ? ? A . n A 1 285 LEU 285 285 ? ? ? A . n A 1 286 GLU 286 286 ? ? ? A . n A 1 287 GLY 287 287 ? ? ? A . n A 1 288 LYS 288 288 ? ? ? A . n A 1 289 LYS 289 289 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PIO 1 300 300 PIO PIO A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2220 ? 1 MORE -7.5 ? 1 'SSA (A^2)' 31360 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 77.7250000000 -1.0000000000 0.0000000000 0.0000000000 77.7250000000 0.0000000000 0.0000000000 -1.0000000000 61.1325000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-02-12 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2118 ? ? O A HOH 2120 ? ? 1.92 2 1 OD1 A ASP 144 ? ? OG1 A THR 146 ? ? 1.97 3 1 NZ A LYS 39 ? ? OD2 A ASP 43 ? ? 2.07 4 1 OE2 A GLU 91 ? ? OH A TYR 138 ? ? 2.08 5 1 O A HOH 2029 ? ? O A HOH 2086 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2044 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2044 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_556 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 SD A MET 52 ? ? CE A MET 52 ? ? 2.180 1.774 0.406 0.056 N 2 1 SD A MET 86 ? ? CE A MET 86 ? ? 1.068 1.774 -0.706 0.056 N 3 1 CD1 A TYR 96 ? ? CE1 A TYR 96 ? ? 1.280 1.389 -0.109 0.015 N 4 1 CE2 A TYR 96 ? ? CD2 A TYR 96 ? ? 1.290 1.389 -0.099 0.015 N 5 1 CD1 A TYR 127 ? ? CE1 A TYR 127 ? ? 1.245 1.389 -0.144 0.015 N 6 1 CB A GLU 133 ? ? CG A GLU 133 ? ? 1.399 1.517 -0.118 0.019 N 7 1 CD1 A TYR 211 ? ? CE1 A TYR 211 ? ? 1.489 1.389 0.100 0.015 N 8 1 CD A GLU 255 ? ? OE2 A GLU 255 ? ? 1.172 1.252 -0.080 0.011 N 9 1 CB A VAL 257 ? ? CG2 A VAL 257 ? ? 1.363 1.524 -0.161 0.021 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A MET 86 ? ? SD A MET 86 ? ? CE A MET 86 ? ? 87.44 100.20 -12.76 1.60 N 2 1 NE A ARG 129 ? ? CZ A ARG 129 ? ? NH2 A ARG 129 ? ? 116.75 120.30 -3.55 0.50 N 3 1 CB A ASP 144 ? ? CG A ASP 144 ? ? OD2 A ASP 144 ? ? 126.78 118.30 8.48 0.90 N 4 1 CB A TYR 211 ? ? CG A TYR 211 ? ? CD2 A TYR 211 ? ? 116.03 121.00 -4.97 0.60 N 5 1 CB A TYR 211 ? ? CG A TYR 211 ? ? CD1 A TYR 211 ? ? 126.54 121.00 5.54 0.60 N 6 1 CB A ASP 224 ? ? CG A ASP 224 ? ? OD2 A ASP 224 ? ? 124.22 118.30 5.92 0.90 N 7 1 CB A ASP 260 ? ? CG A ASP 260 ? ? OD1 A ASP 260 ? ? 124.18 118.30 5.88 0.90 N 8 1 NE A ARG 261 ? ? CZ A ARG 261 ? ? NH1 A ARG 261 ? ? 124.53 120.30 4.23 0.50 N 9 1 N A SER 268 ? ? CA A SER 268 ? ? C A SER 268 ? ? 92.84 111.00 -18.16 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 103 ? ? -118.52 -120.64 2 1 ALA A 152 ? ? -143.36 -24.43 3 1 VAL A 155 ? ? 3.93 -79.26 4 1 CYS A 230 ? ? -45.42 -1.43 5 1 SER A 268 ? ? -154.42 77.23 6 1 GLN A 269 ? ? -173.71 105.58 7 1 ALA A 270 ? ? 86.27 13.31 8 1 SER A 273 ? ? -64.76 25.35 9 1 LEU A 274 ? ? -56.67 7.74 10 1 LEU A 275 ? ? -102.31 56.96 11 1 ALA A 277 ? ? -69.05 2.46 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A PIO 300 ? C1A ? B PIO 1 C1A 2 1 N 1 A PIO 300 ? O1A ? B PIO 1 O1A 3 1 N 1 A PIO 300 ? C1B ? B PIO 1 C1B 4 1 N 1 A PIO 300 ? O1B ? B PIO 1 O1B 5 1 N 1 A PIO 300 ? C1C ? B PIO 1 C1C 6 1 N 1 A PIO 300 ? C2A ? B PIO 1 C2A 7 1 N 1 A PIO 300 ? C2B ? B PIO 1 C2B 8 1 N 1 A PIO 300 ? C2C ? B PIO 1 C2C 9 1 N 1 A PIO 300 ? O2C ? B PIO 1 O2C 10 1 N 1 A PIO 300 ? C3A ? B PIO 1 C3A 11 1 N 1 A PIO 300 ? C3B ? B PIO 1 C3B 12 1 N 1 A PIO 300 ? C3C ? B PIO 1 C3C 13 1 N 1 A PIO 300 ? O3C ? B PIO 1 O3C 14 1 N 1 A PIO 300 ? C4A ? B PIO 1 C4A 15 1 N 1 A PIO 300 ? C4B ? B PIO 1 C4B 16 1 N 1 A PIO 300 ? C5A ? B PIO 1 C5A 17 1 N 1 A PIO 300 ? C5B ? B PIO 1 C5B 18 1 N 1 A PIO 300 ? C6A ? B PIO 1 C6A 19 1 N 1 A PIO 300 ? C6B ? B PIO 1 C6B 20 1 N 1 A PIO 300 ? C7A ? B PIO 1 C7A 21 1 N 1 A PIO 300 ? C7B ? B PIO 1 C7B 22 1 N 1 A PIO 300 ? C8A ? B PIO 1 C8A 23 1 N 1 A PIO 300 ? C8B ? B PIO 1 C8B # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A GLN 4 ? A GLN 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A THR 7 ? A THR 7 8 1 Y 1 A ASP 8 ? A ASP 8 9 1 Y 1 A ARG 9 ? A ARG 9 10 1 Y 1 A ILE 10 ? A ILE 10 11 1 Y 1 A THR 11 ? A THR 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A ALA 13 ? A ALA 13 14 1 Y 1 A GLN 14 ? A GLN 14 15 1 Y 1 A HIS 15 ? A HIS 15 16 1 Y 1 A SER 16 ? A SER 16 17 1 Y 1 A VAL 17 ? A VAL 17 18 1 Y 1 A THR 18 ? A THR 18 19 1 Y 1 A LEU 282 ? A LEU 282 20 1 Y 1 A ALA 283 ? A ALA 283 21 1 Y 1 A SER 284 ? A SER 284 22 1 Y 1 A LEU 285 ? A LEU 285 23 1 Y 1 A GLU 286 ? A GLU 286 24 1 Y 1 A GLY 287 ? A GLY 287 25 1 Y 1 A LYS 288 ? A LYS 288 26 1 Y 1 A LYS 289 ? A LYS 289 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate ; PIO 3 water HOH #