HEADER OXIDOREDUCTASE 08-DEC-00 1HFU TITLE TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS AT 1.68 A RESOLUTION CAVEAT 1HFU MAN B 2 HAS WRONG CHIRALITY AT ATOM C4 NAG C 2 HAS WRONG CAVEAT 2 1HFU CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE 1; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINUS CINEREUS; SOURCE 3 ORGANISM_COMMON: INKY CAP FUNGUS; SOURCE 4 ORGANISM_TAXID: 5346; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: A. ORYZAE A1560; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PDSY67 KEYWDS OXIDOREDUCTASE, LACCASE, BLUE MULTI-COPPER OXIDASE, TYPE-2 COPPER KEYWDS 2 DEPLETED, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.DUCROS,A.M.BRZOZOWSKI REVDAT 8 20-NOV-24 1HFU 1 REMARK REVDAT 7 13-DEC-23 1HFU 1 REMARK HETSYN LINK REVDAT 6 29-JUL-20 1HFU 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 11-SEP-19 1HFU 1 CAVEAT COMPND REMARK HET REVDAT 5 2 1 HETNAM FORMUL LINK ATOM REVDAT 4 17-SEP-14 1HFU 1 REMARK REVDAT 3 03-SEP-14 1HFU 1 REMARK VERSN FORMUL SITE REVDAT 2 24-FEB-09 1HFU 1 VERSN REVDAT 1 06-DEC-01 1HFU 0 JRNL AUTH V.DUCROS,A.M.BRZOZOWSKI,K.S.WILSON,P.OSTERGAARD,P.SCHNEIDER, JRNL AUTH 2 A.SVENDSON,G.J.DAVIES JRNL TITL STRUCTURE OF THE LACCASE FROM COPRINUS CINEREUS AT 1.68A JRNL TITL 2 RESOLUTION: EVIDENCE FOR DIFFERENT TYPE 2 CU-DEPLETED JRNL TITL 3 ISOFORMS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 57 333 2001 JRNL REFN ISSN 0907-4449 JRNL PMID 11173497 JRNL DOI 10.1107/S0907444900013779 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.DUCROS,A.M.BRZOZOWSKI,K.S.WILSON,S.H.BROWN,P.OSTERGAARD, REMARK 1 AUTH 2 P.SCHNEIDER,D.S.YAVER,A.H.PEDERSEN,G.J.DAVIES REMARK 1 TITL CRYSTAL STRUCTURE OF THE TYPE-2 CU DEPLETED LACCASE FROM REMARK 1 TITL 2 COPRINUS CINEREUS AT 2.2 A RESOLUTION REMARK 1 REF NAT.STRUCT.BIOL. V. 5 310 1998 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 9546223 REMARK 1 DOI 10.1038/NSB0498-310 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.DUCROS,G.J.DAVIES,D.M.LAWSON,K.S.WILSON,S.H.BROWN, REMARK 1 AUTH 2 P.OSTERGAARD,A.H.PEDERSEN,P.SCHNEIDER,D.S.YAVER, REMARK 1 AUTH 3 A.M.BRZOZOWSKI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 LACCASE FROM COPRINUS CINEREUS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 53 605 1997 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15299893 REMARK 1 DOI 10.1107/S0907444997004897 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 58721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2935 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 461 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.197 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.011 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.030 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.033 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.025 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.131 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.184 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.238 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.200 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 13.300; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 29.600; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.813 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.369 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.716 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.540 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE OCCUPANCY OF SOME ATOMS OF REMARK 3 RESIDUES: GLN164, MET459, VAL503 ARE SET TO ZERO DUE TO DISORDER; REMARK 3 THEY WERE MODELLED STEREOCHEMICALLY. REMARK 4 REMARK 4 1HFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1290005633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : LONG FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : 0.27500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1A65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS AT 30MG/ML IN 100MM REMARK 280 ACETATE BUFFER PH 5.5. CRYSTALS GROW FROM 20-30% PEG 8000, PH REMARK 280 5.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL_UNIT: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 161 REMARK 465 ALA A 162 REMARK 465 ALA A 163 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN A 164 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 459 CB CG SD CE REMARK 480 VAL A 503 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 164 C PRO A 165 N -0.349 REMARK 500 MET A 459 CA MET A 459 CB -0.210 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 69 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 PRO A 165 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 291 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASN A 343 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 ASN A 343 CB - CG - ND2 ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 59.39 -148.38 REMARK 500 ASN A 130 41.39 -140.15 REMARK 500 ASP A 140 101.63 -162.85 REMARK 500 ASP A 205 -70.28 -155.87 REMARK 500 ASN A 420 49.48 -159.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2047 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A2048 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A2119 DISTANCE = 5.98 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN B 1 REMARK 610 NAG C 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 703 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 141.1 REMARK 620 3 HIS A 453 NE2 112.2 105.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 702 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 399 NE2 140.6 REMARK 620 3 HIS A 401 NE2 114.3 69.4 REMARK 620 4 HIS A 451 NE2 119.4 87.8 116.7 REMARK 620 5 HOH A2386 O 83.5 61.6 113.8 103.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 701 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 396 ND1 REMARK 620 2 CYS A 452 SG 125.6 REMARK 620 3 HIS A 457 ND1 103.8 130.5 REMARK 620 N 1 2 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A65 RELATED DB: PDB REMARK 900 TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS DBREF 1HFU A 1 503 UNP Q9Y780 Q9Y780 19 521 SEQADV 1HFU ALA A 1 PDB 1A65 GLN 1 CLONING ARTIFACT SEQRES 1 A 503 ALA ILE VAL ASN SER VAL ASP THR MET THR LEU THR ASN SEQRES 2 A 503 ALA ASN VAL SER PRO ASP GLY PHE THR ARG ALA GLY ILE SEQRES 3 A 503 LEU VAL ASN GLY VAL HIS GLY PRO LEU ILE ARG GLY GLY SEQRES 4 A 503 LYS ASN ASP ASN PHE GLU LEU ASN VAL VAL ASN ASP LEU SEQRES 5 A 503 ASP ASN PRO THR MET LEU ARG PRO THR SER ILE HIS TRP SEQRES 6 A 503 HIS GLY LEU PHE GLN ARG GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 503 ALA ASP GLY VAL ASN GLN CYS PRO ILE SER PRO GLY HIS SEQRES 8 A 503 ALA PHE LEU TYR LYS PHE THR PRO ALA GLY HIS ALA GLY SEQRES 9 A 503 THR PHE TRP TYR HIS SER HIS PHE GLY THR GLN TYR CYS SEQRES 10 A 503 ASP GLY LEU ARG GLY PRO MET VAL ILE TYR ASP ASP ASN SEQRES 11 A 503 ASP PRO HIS ALA ALA LEU TYR ASP GLU ASP ASP GLU ASN SEQRES 12 A 503 THR ILE ILE THR LEU ALA ASP TRP TYR HIS ILE PRO ALA SEQRES 13 A 503 PRO SER ILE GLN GLY ALA ALA GLN PRO ASP ALA THR LEU SEQRES 14 A 503 ILE ASN GLY LYS GLY ARG TYR VAL GLY GLY PRO ALA ALA SEQRES 15 A 503 GLU LEU SER ILE VAL ASN VAL GLU GLN GLY LYS LYS TYR SEQRES 16 A 503 ARG MET ARG LEU ILE SER LEU SER CYS ASP PRO ASN TRP SEQRES 17 A 503 GLN PHE SER ILE ASP GLY HIS GLU LEU THR ILE ILE GLU SEQRES 18 A 503 VAL ASP GLY GLU LEU THR GLU PRO HIS THR VAL ASP ARG SEQRES 19 A 503 LEU GLN ILE PHE THR GLY GLN ARG TYR SER PHE VAL LEU SEQRES 20 A 503 ASP ALA ASN GLN PRO VAL ASP ASN TYR TRP ILE ARG ALA SEQRES 21 A 503 GLN PRO ASN LYS GLY ARG ASN GLY LEU ALA GLY THR PHE SEQRES 22 A 503 ALA ASN GLY VAL ASN SER ALA ILE LEU ARG TYR ALA GLY SEQRES 23 A 503 ALA ALA ASN ALA ASP PRO THR THR SER ALA ASN PRO ASN SEQRES 24 A 503 PRO ALA GLN LEU ASN GLU ALA ASP LEU HIS ALA LEU ILE SEQRES 25 A 503 ASP PRO ALA ALA PRO GLY ILE PRO THR PRO GLY ALA ALA SEQRES 26 A 503 ASP VAL ASN LEU ARG PHE GLN LEU GLY PHE SER GLY GLY SEQRES 27 A 503 ARG PHE THR ILE ASN GLY THR ALA TYR GLU SER PRO SER SEQRES 28 A 503 VAL PRO THR LEU LEU GLN ILE MET SER GLY ALA GLN SER SEQRES 29 A 503 ALA ASN ASP LEU LEU PRO ALA GLY SER VAL TYR GLU LEU SEQRES 30 A 503 PRO ARG ASN GLN VAL VAL GLU LEU VAL VAL PRO ALA GLY SEQRES 31 A 503 VAL LEU GLY GLY PRO HIS PRO PHE HIS LEU HIS GLY HIS SEQRES 32 A 503 ALA PHE SER VAL VAL ARG SER ALA GLY SER SER THR TYR SEQRES 33 A 503 ASN PHE VAL ASN PRO VAL LYS ARG ASP VAL VAL SER LEU SEQRES 34 A 503 GLY VAL THR GLY ASP GLU VAL THR ILE ARG PHE VAL THR SEQRES 35 A 503 ASP ASN PRO GLY PRO TRP PHE PHE HIS CYS HIS ILE GLU SEQRES 36 A 503 PHE HIS LEU MET ASN GLY LEU ALA ILE VAL PHE ALA GLU SEQRES 37 A 503 ASP MET ALA ASN THR VAL ASP ALA ASN ASN PRO PRO VAL SEQRES 38 A 503 GLU TRP ALA GLN LEU CYS GLU ILE TYR ASP ASP LEU PRO SEQRES 39 A 503 PRO GLU ALA THR SER ILE GLN THR VAL HET MAN B 1 11 HET MAN B 2 11 HET NAG C 1 14 HET NAG C 2 14 HET CU A 701 1 HET CU A 702 1 HET CU A 703 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 MAN 2(C6 H12 O6) FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 CU 3(CU 2+) FORMUL 7 HOH *461(H2 O) HELIX 1 1 THR A 73 ASP A 77 5 5 HELIX 2 2 THR A 114 GLY A 119 5 6 HELIX 3 3 HIS A 133 TYR A 137 5 5 HELIX 4 4 PRO A 155 ILE A 159 5 5 HELIX 5 5 GLY A 265 THR A 272 5 8 HELIX 6 6 PHE A 273 VAL A 277 5 5 HELIX 7 7 ASN A 304 LEU A 308 5 5 HELIX 8 8 PRO A 353 SER A 360 1 8 HELIX 9 9 SER A 364 LEU A 368 5 5 HELIX 10 10 ILE A 454 ASN A 460 1 7 HELIX 11 11 ASP A 469 ASN A 477 1 9 HELIX 12 12 PRO A 480 ASP A 492 1 13 HELIX 13 13 PRO A 494 SER A 499 1 6 SHEET 1 AA 5 ILE A 2 VAL A 3 0 SHEET 2 AA 5 LEU A 35 GLY A 39 1 O LEU A 35 N VAL A 3 SHEET 3 AA 5 ARG A 121 TYR A 127 1 O PRO A 123 N ILE A 36 SHEET 4 AA 5 GLY A 104 SER A 110 -1 O GLY A 104 N ILE A 126 SHEET 5 AA 5 ILE A 63 HIS A 66 -1 O HIS A 64 N HIS A 109 SHEET 1 AB 4 ARG A 23 VAL A 28 0 SHEET 2 AB 4 VAL A 6 VAL A 16 -1 O THR A 12 N LEU A 27 SHEET 3 AB 4 PHE A 44 ASN A 50 1 O GLU A 45 N ASP A 7 SHEET 4 AB 4 ALA A 92 PHE A 97 -1 O PHE A 93 N VAL A 48 SHEET 1 AC 6 ALA A 167 ILE A 170 0 SHEET 2 AC 6 ILE A 145 TRP A 151 -1 O ALA A 149 N LEU A 169 SHEET 3 AC 6 LYS A 194 SER A 201 1 O ARG A 198 N ILE A 146 SHEET 4 AC 6 ARG A 242 ASP A 248 -1 O TYR A 243 N LEU A 199 SHEET 5 AC 6 LEU A 217 VAL A 222 -1 O THR A 218 N VAL A 246 SHEET 6 AC 6 GLU A 225 VAL A 232 -1 O GLU A 225 N VAL A 222 SHEET 1 AD 5 ILE A 186 VAL A 189 0 SHEET 2 AD 5 SER A 279 TYR A 284 1 O ILE A 281 N VAL A 187 SHEET 3 AD 5 ASN A 255 PRO A 262 -1 O TYR A 256 N LEU A 282 SHEET 4 AD 5 TRP A 208 ILE A 212 -1 O GLN A 209 N GLN A 261 SHEET 5 AD 5 LEU A 235 ILE A 237 -1 O LEU A 235 N PHE A 210 SHEET 1 AE 5 VAL A 327 ARG A 330 0 SHEET 2 AE 5 VAL A 382 PRO A 388 1 O VAL A 382 N VAL A 327 SHEET 3 AE 5 GLU A 435 VAL A 441 -1 O VAL A 436 N VAL A 387 SHEET 4 AE 5 PHE A 405 ARG A 409 -1 O SER A 406 N ARG A 439 SHEET 5 AE 5 LYS A 423 ARG A 424 -1 O ARG A 424 N PHE A 405 SHEET 1 AF 2 LEU A 333 SER A 336 0 SHEET 2 AF 2 ARG A 339 ILE A 342 -1 O ARG A 339 N SER A 336 SHEET 1 AG 5 VAL A 374 LEU A 377 0 SHEET 2 AG 5 ALA A 463 GLU A 468 1 O VAL A 465 N TYR A 375 SHEET 3 AG 5 GLY A 446 CYS A 452 -1 O GLY A 446 N GLU A 468 SHEET 4 AG 5 PRO A 397 LEU A 400 -1 O HIS A 399 N HIS A 451 SHEET 5 AG 5 VAL A 426 SER A 428 -1 O VAL A 427 N PHE A 398 SSBOND 1 CYS A 85 CYS A 487 1555 1555 2.01 SSBOND 2 CYS A 117 CYS A 204 1555 1555 2.04 LINK O2 MAN B 1 C1 MAN B 2 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK ND1 HIS A 66 CU CU A 703 1555 1555 1.97 LINK NE2 HIS A 109 CU CU A 703 1555 1555 2.01 LINK NE2 HIS A 111 CU CU A 702 1555 1555 2.01 LINK ND1 HIS A 396 CU CU A 701 1555 1555 2.07 LINK NE2BHIS A 399 CU CU A 702 1555 1555 2.50 LINK NE2 HIS A 401 CU CU A 702 1555 1555 2.04 LINK NE2 HIS A 451 CU CU A 702 1555 1555 1.99 LINK SG CYS A 452 CU CU A 701 1555 1555 2.19 LINK NE2 HIS A 453 CU CU A 703 1555 1555 2.13 LINK ND1 HIS A 457 CU CU A 701 1555 1555 2.03 LINK CU CU A 702 O HOH A2386 1555 1555 2.18 CISPEP 1 LEU A 369 PRO A 370 0 -1.09 CISPEP 2 GLY A 394 PRO A 395 0 -1.41 CRYST1 45.120 84.560 139.030 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007193 0.00000