HEADER G PROTEIN 08-DEC-00 1HFV OBSLTE 21-SEP-06 1HFV 2J5X TITLE STRUCTURE OF THE SMALL G PROTEIN ARF6 IN COMPLEX WITH TITLE 2 GTPGAMMAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ARF6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS G PROTEIN, RAS, ARF, ARF6, MEMBRANE TRAFFIC EXPDTA X-RAY DIFFRACTION AUTHOR S.PASQUALATO,J.MENETREY,J.CHERFILS REVDAT 1 16-FEB-01 1HFV 0 JRNL AUTH S.PASQUALATO,J.MENETREY,M.FRANCO,J.CHERFILS JRNL TITL THE STRUCTURAL GDP/GTP CYCLE OF HUMAN ARF6 JRNL REF EMBO REP. V. 2 234 2001 JRNL REFN UK ISSN 1469-221X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 8616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.700 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1128 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 120 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.85 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.720 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.800 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 40.18 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GSP.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : GSP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FIRST TEN RESIDUES IN CHAIN A REMARK 3 AND B WERE NOT VISIBLE IN THE DENSITY MAPS. REMARK 4 REMARK 4 1HFV COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.101 (2007-05-01) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 8-DEC-2000. REMARK 100 THE EBI ID CODE IS EBI-5612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-2000 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MAR RESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK & TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMEN REMARK 200 SOFTWARE USED: CNS 1.0 REMARK 200 STARTING MODEL: ARF1DELTA17-GDPNHP, FROM GOLDBERG J. (1998), REMARK 200 CELL 95: 237-248 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 1/2-Y,1/2+X,1/4+Z REMARK 290 4555 1/2+Y,1/2-X,3/4+Z REMARK 290 5555 1/2-X,1/2+Y,1/4-Z REMARK 290 6555 1/2+X,1/2-Y,3/4-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.74450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.44750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.44750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.87225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.44750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.44750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.61675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.44750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.44750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.87225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.44750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.44750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.61675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.74450 REMARK 290 REMARK 290 REMARK: NULL REMARK 295 REMARK 295 NON-CRYSTALLOGRAPHIC SYMMETRY REMARK 295 THE TRANSFORMATIONS PRESENTED ON THE MTRIX RECORDS BELOW REMARK 295 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG ATOMS REMARK 295 IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX REMARK 295 TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD REMARK 295 APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. REMARK 295 CHAIN IDENTIFIERS GIVEN AS "?" REFER TO CHAINS FOR WHICH REMARK 295 ATOMS ARE NOT FOUND IN THIS ENTRY. REMARK 295 REMARK 295 APPLIED TO TRANSFORMED TO REMARK 295 TRANSFORM CHAIN RESIDUES CHAIN RESIDUES RMSD REMARK 295 SSS REMARK 295 M 1 A 11 .. 174 B 11 .. 174 0.453 REMARK 295 REMARK 295 WHERE SSS -> COLUMNS 8-10 OF MTRIX RECORDS REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Z REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ILE A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 SER A 175 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 LEU B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 ILE B 8 REMARK 465 PHE B 9 REMARK 465 GLY B 10 REMARK 465 SER B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 11 CG OD1 ND2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 ASN B 11 CG OD1 ND2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 TYR B 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 174 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 130 SD MET A 130 CE 0.052 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. =-11.1 DEGREES REMARK 500 ASP A 89 N - CA - C ANGL. DEV. = -9.7 DEGREES REMARK 500 ALA A 121 N - CA - C ANGL. DEV. =-12.0 DEGREES REMARK 500 LYS A 131 N - CA - C ANGL. DEV. = 8.8 DEGREES REMARK 500 CYS A 155 N - CA - C ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP B 89 N - CA - C ANGL. DEV. = -9.7 DEGREES REMARK 500 ALA B 121 N - CA - C ANGL. DEV. =-11.6 DEGREES REMARK 500 ARG B 145 N - CA - C ANGL. DEV. = -8.9 DEGREES REMARK 500 CYS B 155 N - CA - C ANGL. DEV. = -8.6 DEGREES REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 FOR METAL ATOM MG MG A 200 THE COORDINATION ANGLES ARE: REMARK 600 1 GSP 190A O2G REMARK 600 2 GSP 190A O2B 92.7 REMARK 600 3 HOH 4Z O 91.4 86.3 REMARK 600 4 THR 27A OG1 159.5 75.3 71.6 REMARK 600 5 THR 44A OG1 109.8 157.5 91.8 82.8 REMARK 600 6 HOH 10Z O 113.6 76.0 149.6 80.0 95.4 REMARK 600 1 2 3 4 5 REMARK 600 REMARK 600 FOR METAL ATOM MG MG B 200 THE COORDINATION ANGLES ARE: REMARK 600 1 HOH 2Y O REMARK 600 2 THR 27B OG1 80.8 REMARK 600 3 THR 44B OG1 81.5 80.7 REMARK 600 4 GSP 190B O2B 93.5 92.3 171.9 REMARK 600 5 GSP 190B O2G 93.4 172.0 93.1 93.6 REMARK 600 6 HOH 6Y O 165.4 84.8 93.7 89.6 100.7 REMARK 600 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: GSP BINDING SITE FOR CHAIN A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 SITE_DESCRIPTION: GSP BINDING SITE FOR CHAIN B REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 SITE_DESCRIPTION: MG BINDING SITE FOR CHAIN A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 SITE_DESCRIPTION: MG BINDING SITE FOR CHAIN B DBREF 1HFV A 2 175 UNP P62330 ARF6_HUMAN 1 174 DBREF 1HFV B 2 175 UNP P62330 ARF6_HUMAN 1 174 SEQADV 1HFV LEU A 45 UNP P62330 VAL 44 CONFLICT SEQADV 1HFV LEU B 45 UNP P62330 VAL 44 CONFLICT SEQRES 1 A 174 GLY LYS VAL LEU SER LYS ILE PHE GLY ASN LYS GLU MET SEQRES 2 A 174 ARG ILE LEU MET LEU GLY LEU ASP ALA ALA GLY LYS THR SEQRES 3 A 174 THR ILE LEU TYR LYS LEU LYS LEU GLY GLN SER VAL THR SEQRES 4 A 174 THR ILE PRO THR LEU GLY PHE ASN VAL GLU THR VAL THR SEQRES 5 A 174 TYR LYS ASN VAL LYS PHE ASN VAL TRP ASP VAL GLY GLY SEQRES 6 A 174 GLN ASP LYS ILE ARG PRO LEU TRP ARG HIS TYR TYR THR SEQRES 7 A 174 GLY THR GLN GLY LEU ILE PHE VAL VAL ASP CYS ALA ASP SEQRES 8 A 174 ARG ASP ARG ILE ASP GLU ALA ARG GLN GLU LEU HIS ARG SEQRES 9 A 174 ILE ILE ASN ASP ARG GLU MET ARG ASP ALA ILE ILE LEU SEQRES 10 A 174 ILE PHE ALA ASN LYS GLN ASP LEU PRO ASP ALA MET LYS SEQRES 11 A 174 PRO HIS GLU ILE GLN GLU LYS LEU GLY LEU THR ARG ILE SEQRES 12 A 174 ARG ASP ARG ASN TRP TYR VAL GLN PRO SER CYS ALA THR SEQRES 13 A 174 SER GLY ASP GLY LEU TYR GLU GLY LEU THR TRP LEU THR SEQRES 14 A 174 SER ASN TYR LYS SER SEQRES 1 B 174 GLY LYS VAL LEU SER LYS ILE PHE GLY ASN LYS GLU MET SEQRES 2 B 174 ARG ILE LEU MET LEU GLY LEU ASP ALA ALA GLY LYS THR SEQRES 3 B 174 THR ILE LEU TYR LYS LEU LYS LEU GLY GLN SER VAL THR SEQRES 4 B 174 THR ILE PRO THR LEU GLY PHE ASN VAL GLU THR VAL THR SEQRES 5 B 174 TYR LYS ASN VAL LYS PHE ASN VAL TRP ASP VAL GLY GLY SEQRES 6 B 174 GLN ASP LYS ILE ARG PRO LEU TRP ARG HIS TYR TYR THR SEQRES 7 B 174 GLY THR GLN GLY LEU ILE PHE VAL VAL ASP CYS ALA ASP SEQRES 8 B 174 ARG ASP ARG ILE ASP GLU ALA ARG GLN GLU LEU HIS ARG SEQRES 9 B 174 ILE ILE ASN ASP ARG GLU MET ARG ASP ALA ILE ILE LEU SEQRES 10 B 174 ILE PHE ALA ASN LYS GLN ASP LEU PRO ASP ALA MET LYS SEQRES 11 B 174 PRO HIS GLU ILE GLN GLU LYS LEU GLY LEU THR ARG ILE SEQRES 12 B 174 ARG ASP ARG ASN TRP TYR VAL GLN PRO SER CYS ALA THR SEQRES 13 B 174 SER GLY ASP GLY LEU TYR GLU GLY LEU THR TRP LEU THR SEQRES 14 B 174 SER ASN TYR LYS SER HET MG A 200 1 HET MG B 200 1 HET GSP A 190 32 HET GSP B 190 32 HETNAM MG MAGNESIUM ION HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 5 GSP 2(C10 H16 N5 O13 P3 S) FORMUL 7 HOH *32(H2 O) HELIX 1 1 GLY A 25 GLY A 36 1 12 HELIX 2 2 GLN A 67 TYR A 78 5 12 HELIX 3 3 ASP A 92 ASP A 94 5 3 HELIX 4 4 ARG A 95 ASP A 109 1 15 HELIX 5 5 ARG A 110 ARG A 113 5 4 HELIX 6 6 LYS A 131 LEU A 139 1 9 HELIX 7 7 GLY A 161 ASN A 172 1 12 HELIX 8 8 GLY B 25 GLY B 36 1 12 HELIX 9 9 GLN B 67 TYR B 78 5 12 HELIX 10 10 ASP B 92 ASP B 94 5 3 HELIX 11 11 ARG B 95 ASP B 109 1 15 HELIX 12 12 ARG B 110 ARG B 113 5 4 HELIX 13 13 LYS B 131 LEU B 139 1 9 HELIX 14 14 GLY B 140 ILE B 144 5 5 HELIX 15 15 GLY B 161 SER B 171 1 11 SHEET 1 AA 6 PHE A 47 THR A 53 0 SHEET 2 AA 6 VAL A 57 VAL A 64 -1 O PHE A 59 N VAL A 52 SHEET 3 AA 6 LYS A 12 LEU A 19 1 O LYS A 12 N LYS A 58 SHEET 4 AA 6 GLY A 83 ASP A 89 1 O GLY A 83 N LEU A 17 SHEET 5 AA 6 ILE A 116 ASN A 122 1 O ILE A 116 N LEU A 84 SHEET 6 AA 6 TRP A 149 PRO A 153 1 O TYR A 150 N ILE A 119 SHEET 1 BA 6 PHE B 47 THR B 53 0 SHEET 2 BA 6 LYS B 58 VAL B 64 -1 O PHE B 59 N VAL B 52 SHEET 3 BA 6 GLU B 13 LEU B 19 1 O MET B 14 N ASN B 60 SHEET 4 BA 6 GLY B 83 ASP B 89 1 O GLY B 83 N LEU B 17 SHEET 5 BA 6 ILE B 116 ASN B 122 1 O ILE B 116 N LEU B 84 SHEET 6 BA 6 TRP B 149 PRO B 153 1 O TYR B 150 N ILE B 119 LINK MG MG A 200 O2G GSP A 190 LINK MG MG A 200 O2B GSP A 190 LINK MG MG A 200 O HOH Z 4 LINK MG MG A 200 OG1 THR A 27 LINK MG MG A 200 OG1 THR A 44 LINK MG MG A 200 O HOH Z 10 LINK MG MG B 200 OG1 THR B 27 LINK MG MG B 200 OG1 THR B 44 LINK MG MG B 200 O2B GSP B 190 LINK MG MG B 200 O2G GSP B 190 LINK MG MG B 200 O HOH Y 6 LINK MG MG B 200 O HOH Y 2 SITE 1 AC1 24 ASP A 22 ALA A 23 ALA A 24 GLY A 25 SITE 2 AC1 24 LYS A 26 THR A 27 THR A 28 THR A 41 SITE 3 AC1 24 PRO A 43 THR A 44 GLY A 65 GLY A 66 SITE 4 AC1 24 ASN A 122 LYS A 123 ASP A 125 LEU A 126 SITE 5 AC1 24 CYS A 155 ALA A 156 THR A 157 LEU B 45 SITE 6 AC1 24 GLY B 46 PHE B 47 HOH Z 4 HOH Z 10 SITE 1 AC2 23 GLY A 46 PHE A 47 ASP B 22 ALA B 23 SITE 2 AC2 23 ALA B 24 GLY B 25 LYS B 26 THR B 27 SITE 3 AC2 23 THR B 28 THR B 41 PRO B 43 THR B 44 SITE 4 AC2 23 GLY B 66 HIS B 76 ASN B 122 LYS B 123 SITE 5 AC2 23 ASP B 125 CYS B 155 ALA B 156 THR B 157 SITE 6 AC2 23 HOH Y 2 HOH Y 6 HOH Z 7 SITE 1 AC3 4 THR A 27 THR A 44 HOH Z 4 HOH Z 10 SITE 1 AC4 4 THR B 27 THR B 44 HOH Y 2 HOH Y 6 CRYST1 72.895 72.895 131.489 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013718 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007605 0.00000 MTRIX1 1 -0.999932 -0.011239 0.003138 174.44279 1 MTRIX2 1 0.010826 -0.793178 0.608894 -1.51400 1 MTRIX3 1 -0.004354 0.608886 0.793246 0.70450 1