data_1HHY
#
_entry.id 1HHY
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.329
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 1HHY
PDBE EBI-5733
WWPDB D_1290005733
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1GO6 unspecified 'CRYSTAL STRUCTURE OF BALHIMYCIN COMPLEXED WITH THE PEPTIDE LYS-DAL-DAL'
PDB 1HHU unspecified 'CRYSTAL STRUCTURE OF BALHIMYCIN COMPLEXED WITH DAL-DAL'
PDB 1HHZ unspecified 'CRYSTAL STRUCTURE OF DEGLUCOBALHIMYCIN COPMLEXED WITH CELL WALL PENTAPEPTIDE'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1HHY
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2000-12-29
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Lehmann, C.' 1
'Bunkoczi, G.' 2
'Sheldrick, G.M.' 3
'Vertesy, L.' 4
#
_citation.id primary
_citation.title
'Structures of Glycopeptide Antibiotics with Peptides that Model Bacterial Cell-Wall Precursors'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 318
_citation.page_first 723
_citation.page_last ?
_citation.year 2002
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 12054818
_citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00146-8'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Lehmann, C.' 1 ?
primary 'Bunkoczi, G.' 2 ?
primary 'Vertesy, L.' 3 ?
primary 'Sheldrick, G.M.' 4 ?
#
_cell.entry_id 1HHY
_cell.length_a 48.444
_cell.length_b 48.444
_cell.length_c 43.086
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 24
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1HHY
_symmetry.space_group_name_H-M 'P 63 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 182
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn DEGLUCOBALHIMYCIN 1149.977 2 ? ? ? ?
2 non-polymer man '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' 177.198 2 ? ? ? ?
3 non-polymer syn D-ALANINE 89.093 4 ? ? ? ?
4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ?
5 non-polymer syn S-1,2-PROPANEDIOL 76.094 1 ? ? ? ?
6 water nat water 18.015 53 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)'
_entity_poly.pdbx_seq_one_letter_code_can XXNGGYX
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MLU n
1 2 OMZ n
1 3 ASN n
1 4 GHP n
1 5 GHP n
1 6 OMY n
1 7 3FG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'AMYCOLATOPSIS SP.'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 37632
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name NOR
_struct_ref.db_code NOR00707
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession NOR00707
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1HHY A 1 ? 7 ? NOR00707 1 ? 7 ? 1 7
2 1 1HHY B 1 ? 7 ? NOR00707 1 ? 7 ? 1 7
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093
DVC 'L-saccharide, alpha linking' . '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' ? 'C7 H15 N O4' 177.198
GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162
HOH non-polymer . WATER ? 'H2 O' 18.015
MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199
NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990
OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633
OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633
PGO non-polymer . S-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094
#
_exptl.entry_id 1HHY
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.4
_exptl_crystal.density_percent_sol 31.0
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '0.3M CIT, PH=7, 30% 1,2-PROPANEDIOL, pH 7.00'
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 1998-09-15
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9076
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline X11
_diffrn_source.pdbx_wavelength 0.9076
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 1HHY
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30.060
_reflns.d_resolution_high 0.890
_reflns.number_obs 22973
_reflns.number_all ?
_reflns.percent_possible_obs 98.9
_reflns.pdbx_Rmerge_I_obs 0.02980
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 62.9300
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 7.390
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 0.89
_reflns_shell.d_res_low 1.00
_reflns_shell.percent_possible_all 98.0
_reflns_shell.Rmerge_I_obs 0.08000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 28.950
_reflns_shell.pdbx_redundancy 7.45
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 1HHY
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all 22768
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 30.06
_refine.ls_d_res_high 0.89
_refine.ls_percent_reflns_obs 98.9
_refine.ls_R_factor_obs 0.1212
_refine.ls_R_factor_all 0.1217
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free 0.1394
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.0
_refine.ls_number_reflns_R_free 1127
_refine.ls_number_parameters 2450
_refine.ls_number_restraints 2978
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'DIRECT METHODS'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details SHELLS
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.entry_id 1HHY
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 1
_refine_analyze.occupancy_sum_hydrogen 156.00
_refine_analyze.occupancy_sum_non_hydrogen 261.13
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 160
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 51
_refine_hist.number_atoms_solvent 53
_refine_hist.number_atoms_total 264
_refine_hist.d_res_high 0.89
_refine_hist.d_res_low 30.06
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.096 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol 0.102 ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.060 ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt 0.008 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt 0.024 ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps 0.112 ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.entry_id 1HHY
_pdbx_refine.R_factor_all_no_cutoff 0.1217
_pdbx_refine.R_factor_obs_no_cutoff 0.1212
_pdbx_refine.free_R_factor_no_cutoff 0.1394
_pdbx_refine.free_R_error_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0
_pdbx_refine.free_R_val_test_set_ct_no_cutoff 1127
_pdbx_refine.R_factor_all_4sig_cutoff 0.1209
_pdbx_refine.R_factor_obs_4sig_cutoff 0.1204
_pdbx_refine.free_R_factor_4sig_cutoff 0.1380
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.9
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1100
_pdbx_refine.number_reflns_obs_4sig_cutoff 22298
#
_struct_ncs_oper.id 1
_struct_ncs_oper.code given
_struct_ncs_oper.details ?
_struct_ncs_oper.matrix[1][1] 0.309860
_struct_ncs_oper.matrix[1][2] -0.758630
_struct_ncs_oper.matrix[1][3] -0.573120
_struct_ncs_oper.matrix[2][1] -0.760620
_struct_ncs_oper.matrix[2][2] -0.559470
_struct_ncs_oper.matrix[2][3] 0.329320
_struct_ncs_oper.matrix[3][1] -0.570470
_struct_ncs_oper.matrix[3][2] 0.333880
_struct_ncs_oper.matrix[3][3] -0.750390
_struct_ncs_oper.vector[1] 37.06617
_struct_ncs_oper.vector[2] 35.15608
_struct_ncs_oper.vector[3] 37.59990
#
_struct.entry_id 1HHY
_struct.title 'Deglucobalhimycin in complex with D-Ala-D-Ala'
_struct.pdbx_descriptor DEGLUCOBALHIMYCIN
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1HHY
_struct_keywords.pdbx_keywords ANTIBIOTIC
_struct_keywords.text 'ANTIBIOTIC, GLYCOPEPTIDE, CELL WALL PEPTIDE'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
F N N 4 ?
G N N 2 ?
H N N 3 ?
I N N 3 ?
J N N 5 ?
K N N 4 ?
L N N 6 ?
M N N 6 ?
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A MLU 1 C A ? ? 1_555 A OMZ 2 N A ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.410 ? ?
covale2 covale both ? A MLU 1 C B ? ? 1_555 A OMZ 2 N B ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.449 ? ?
covale3 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.237 ? ?
covale4 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C3 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.395 ? ?
covale5 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale6 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.349 ? ?
covale7 covale none ? A GHP 4 C5 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.390 ? ?
covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.306 ? ?
covale9 covale none ? A GHP 5 C5 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.472 ? ?
covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale11 covale one ? A OMY 6 ODE ? ? ? 1_555 C DVC . C1 ? ? A OMY 6 A DVC 9 1_555 ? ? ? ? ? ? ? 1.411 ? ?
covale12 covale both ? D DAL . C ? ? ? 1_555 E DAL . N ? ? A DAL 11 A DAL 12 1_555 ? ? ? ? ? ? ? 1.356 ? ?
covale13 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.358 ? ?
covale14 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.319 ? ?
covale15 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C3 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.390 ? ?
covale16 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale17 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale18 covale none ? B GHP 4 C5 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.385 ? ?
covale19 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale20 covale none ? B GHP 5 C5 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.468 ? ?
covale21 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.350 ? ?
covale22 covale one ? B OMY 6 ODE ? ? ? 1_555 G DVC . C1 ? ? B OMY 6 B DVC 9 1_555 ? ? ? ? ? ? ? 1.400 ? ?
covale23 covale both ? H DAL . C ? ? ? 1_555 I DAL . N ? ? B DAL 11 B DAL 12 1_555 ? ? ? ? ? ? ? 1.301 ? ?
metalc1 metalc ? ? A MLU 1 N A ? ? 1_555 F NA . NA ? ? A MLU 1 A NA 1001 1_555 ? ? ? ? ? ? ? 3.127 ? ?
metalc2 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 1001 A HOH 2002 1_555 ? ? ? ? ? ? ? 3.170 ? ?
metalc3 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 1001 A HOH 2022 10_666 ? ? ? ? ? ? ? 3.105 ? ?
metalc4 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 1001 A HOH 2023 1_555 ? ? ? ? ? ? ? 3.179 ? ?
metalc5 metalc ? ? J PGO . O2 ? ? ? 3_565 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.384 ? ?
metalc6 metalc ? ? J PGO . O1 ? ? ? 1_555 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.466 ? ?
metalc7 metalc ? ? J PGO . O1 ? ? ? 2_665 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.466 ? ?
metalc8 metalc ? ? J PGO . O2 ? ? ? 1_555 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.384 ? ?
metalc9 metalc ? ? J PGO . O2 ? ? ? 2_665 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.384 ? ?
metalc10 metalc ? ? J PGO . O1 ? ? ? 3_565 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.466 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 -1.10
2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 2.90
#
_database_PDB_matrix.entry_id 1HHY
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1HHY
_atom_sites.fract_transf_matrix[1][1] 0.020642
_atom_sites.fract_transf_matrix[1][2] 0.011918
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023836
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023209
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CL
N
NA
O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MLU 1 1 1 MLU MLU A . n
A 1 2 OMZ 2 2 2 OMZ OMZ A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 GHP 4 4 4 GHP GHP A . n
A 1 5 GHP 5 5 5 GHP GHP A . n
A 1 6 OMY 6 6 6 OMY OMY A . n
A 1 7 3FG 7 7 7 3FG 3FG A . n
B 1 1 MLU 1 1 1 MLU MLU B . n
B 1 2 OMZ 2 2 2 OMZ OMZ B . n
B 1 3 ASN 3 3 3 ASN ASN B . n
B 1 4 GHP 4 4 4 GHP GHP B . n
B 1 5 GHP 5 5 5 GHP GHP B . n
B 1 6 OMY 6 6 6 OMY OMY B . n
B 1 7 3FG 7 7 7 3FG 3FG B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DVC 1 9 9 DVC DVC A .
D 3 DAL 1 11 11 DAL DAL A .
E 3 DAL 1 12 12 DAL DAL A .
F 4 NA 1 1001 1001 NA NA A .
G 2 DVC 1 9 9 DVC DVC B .
H 3 DAL 1 11 11 DAL DAL B .
I 3 DAL 1 12 12 DAL DAL B .
J 5 PGO 1 1001 1001 PGO PGO B .
K 4 NA 1 1002 1002 NA NA B .
L 6 HOH 1 2001 2001 HOH HOH A .
L 6 HOH 2 2002 2002 HOH HOH A .
L 6 HOH 3 2003 2003 HOH HOH A .
L 6 HOH 4 2004 2004 HOH HOH A .
L 6 HOH 5 2005 2005 HOH HOH A .
L 6 HOH 6 2006 2006 HOH HOH A .
L 6 HOH 7 2007 2007 HOH HOH A .
L 6 HOH 8 2008 2008 HOH HOH A .
L 6 HOH 9 2009 2009 HOH HOH A .
L 6 HOH 10 2010 2010 HOH HOH A .
L 6 HOH 11 2011 2011 HOH HOH A .
L 6 HOH 12 2012 2012 HOH HOH A .
L 6 HOH 13 2013 2013 HOH HOH A .
L 6 HOH 14 2014 2014 HOH HOH A .
L 6 HOH 15 2015 2015 HOH HOH A .
L 6 HOH 16 2016 2016 HOH HOH A .
L 6 HOH 17 2017 2017 HOH HOH A .
L 6 HOH 18 2018 2018 HOH HOH A .
L 6 HOH 19 2019 2019 HOH HOH A .
L 6 HOH 20 2020 2020 HOH HOH A .
L 6 HOH 21 2021 2021 HOH HOH A .
L 6 HOH 22 2022 2022 HOH HOH A .
L 6 HOH 23 2023 2023 HOH HOH A .
M 6 HOH 1 2001 2001 HOH HOH B .
M 6 HOH 2 2002 2002 HOH HOH B .
M 6 HOH 3 2003 2003 HOH HOH B .
M 6 HOH 4 2004 2004 HOH HOH B .
M 6 HOH 5 2005 2005 HOH HOH B .
M 6 HOH 6 2006 2006 HOH HOH B .
M 6 HOH 7 2007 2007 HOH HOH B .
M 6 HOH 8 2008 2008 HOH HOH B .
M 6 HOH 9 2009 2009 HOH HOH B .
M 6 HOH 10 2010 2010 HOH HOH B .
M 6 HOH 11 2011 2011 HOH HOH B .
M 6 HOH 12 2012 2012 HOH HOH B .
M 6 HOH 13 2013 2013 HOH HOH B .
M 6 HOH 14 2014 2014 HOH HOH B .
M 6 HOH 15 2015 2015 HOH HOH B .
M 6 HOH 16 2016 2016 HOH HOH B .
M 6 HOH 17 2017 2017 HOH HOH B .
M 6 HOH 18 2018 2018 HOH HOH B .
M 6 HOH 19 2019 2019 HOH HOH B .
M 6 HOH 20 2020 2020 HOH HOH B .
M 6 HOH 21 2021 2021 HOH HOH B .
M 6 HOH 22 2022 2022 HOH HOH B .
M 6 HOH 23 2023 2023 HOH HOH B .
M 6 HOH 24 2024 2024 HOH HOH B .
M 6 HOH 25 2025 2025 HOH HOH B .
M 6 HOH 26 2026 2026 HOH HOH B .
M 6 HOH 27 2027 2027 HOH HOH B .
M 6 HOH 28 2028 2028 HOH HOH B .
M 6 HOH 29 2029 2029 HOH HOH B .
M 6 HOH 30 2030 2030 HOH HOH B .
#
_pdbx_molecule_features.prd_id PRD_000485
_pdbx_molecule_features.name Deglucobalhimycin
_pdbx_molecule_features.type Glycopeptide
_pdbx_molecule_features.class 'Antibiotic, Antimicrobial'
_pdbx_molecule_features.details
;DEGLUCOBALHIMYCIN LACKS THE D-GLUCOSE
COMPONENT OF BALHIMYCIN CONSISTING OF THE
TRICYCLIC HEPTAPEPTIDE AND (2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL
ONLY LINKED TO RESIDUE 6.
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000485 A
1 PRD_000485 C
2 PRD_000485 B
2 PRD_000485 G
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A OMY 6 A OMY 6 ? TYR ?
2 B OMY 6 B OMY 6 ? TYR ?
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 software_defined_assembly 'PISA 1.18' dimeric 2
2 software_defined_assembly PISA dimeric 2
3 software_defined_assembly PISA dodecameric 12
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E,F,G,H,I,J,K,L,M
2 1,2 A,C,D,E,F,L
3 1,2,3,4,5,6 A,B,C,D,E,F,G,H,I,J,K,L,M
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 600 ?
1 MORE -10.4 ?
1 'SSA (A^2)' 2090 ?
2 'ABSA (A^2)' 880 ?
2 MORE -31.8 ?
2 'SSA (A^2)' 1920 ?
3 'ABSA (A^2)' 11060 ?
3 MORE -232.8 ?
3 'SSA (A^2)' 6560 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5000000000 -0.8660254038 0.0000000000 24.2220000000 -0.8660254038
-0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 -1.0000000000 64.6290000000
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -24.2220000000 -0.8660254038
-0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 11_556 -x+y,y,-z+3/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.6290000000
5 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 24.2220000000 0.8660254038
-0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 12_566 x,x-y+1,-z+3/2 0.5000000000 0.8660254038 0.0000000000 -24.2220000000 0.8660254038
-0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 -1.0000000000 64.6290000000
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 B NA 1002 ? K NA .
2 1 A HOH 2005 ? L HOH .
3 1 B HOH 2010 ? M HOH .
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N A A MLU 1 ? A MLU 1 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2002 ? 1_555 27.2 ?
2 N A A MLU 1 ? A MLU 1 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2022 ? 10_666 97.2 ?
3 O ? L HOH . ? A HOH 2002 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2022 ? 10_666 112.3 ?
4 N A A MLU 1 ? A MLU 1 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2023 ? 1_555 77.1 ?
5 O ? L HOH . ? A HOH 2002 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2023 ? 1_555 95.5 ?
6 O ? L HOH . ? A HOH 2022 ? 10_666 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2023 ? 1_555 103.7 ?
7 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 1_555 98.1 ?
8 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 2_665 159.5 ?
9 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 2_665 92.0 ?
10 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 1_555 102.2 ?
11 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 1_555 69.9 ?
12 O1 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 1_555 98.1 ?
13 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 102.2 ?
14 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 159.5 ?
15 O1 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 69.9 ?
16 O2 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 102.2 ?
17 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 69.9 ?
18 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 92.0 ?
19 O1 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 92.0 ?
20 O2 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 159.5 ?
21 O2 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 98.1 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2003-09-05
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2012-07-25
4 'Structure model' 1 3 2012-11-30
5 'Structure model' 2 0 2019-04-24
6 'Structure model' 2 1 2019-07-10
7 'Structure model' 2 2 2019-07-24
8 'Structure model' 2 3 2020-07-29
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 8 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Atomic model'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Structure summary'
5 2 'Structure model' 'Version format compliance'
6 3 'Structure model' 'Atomic model'
7 3 'Structure model' 'Derived calculations'
8 3 'Structure model' 'Non-polymer description'
9 3 'Structure model' Other
10 4 'Structure model' Other
11 5 'Structure model' 'Data collection'
12 5 'Structure model' 'Derived calculations'
13 5 'Structure model' Other
14 5 'Structure model' 'Polymer sequence'
15 6 'Structure model' 'Data collection'
16 7 'Structure model' 'Data collection'
17 8 'Structure model' 'Data collection'
18 8 'Structure model' 'Derived calculations'
19 8 'Structure model' Other
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' diffrn_source
2 5 'Structure model' entity_poly
3 5 'Structure model' pdbx_database_proc
4 5 'Structure model' pdbx_database_status
5 5 'Structure model' pdbx_seq_map_depositor_info
6 5 'Structure model' struct_conn
7 6 'Structure model' diffrn_source
8 7 'Structure model' diffrn_source
9 8 'Structure model' chem_comp
10 8 'Structure model' pdbx_database_status
11 8 'Structure model' pdbx_struct_conn_angle
12 8 'Structure model' struct_conn
13 8 'Structure model' struct_conn_type
14 8 'Structure model' struct_site
15 8 'Structure model' struct_site_gen
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
2 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
3 5 'Structure model' '_pdbx_database_status.recvd_author_approval'
4 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code'
5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
6 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
7 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
8 8 'Structure model' '_chem_comp.type'
9 8 'Structure model' '_pdbx_database_status.status_code_sf'
10 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
11 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
12 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
13 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
14 8 'Structure model' '_pdbx_struct_conn_angle.value'
15 8 'Structure model' '_struct_conn.conn_type_id'
16 8 'Structure model' '_struct_conn.id'
17 8 'Structure model' '_struct_conn.pdbx_dist_value'
18 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
19 8 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id'
20 8 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id'
21 8 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
22 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
23 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
24 8 'Structure model' '_struct_conn.ptnr1_label_asym_id'
25 8 'Structure model' '_struct_conn.ptnr1_label_atom_id'
26 8 'Structure model' '_struct_conn.ptnr1_label_comp_id'
27 8 'Structure model' '_struct_conn.ptnr1_label_seq_id'
28 8 'Structure model' '_struct_conn.ptnr1_symmetry'
29 8 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
30 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
31 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
32 8 'Structure model' '_struct_conn.ptnr2_label_asym_id'
33 8 'Structure model' '_struct_conn.ptnr2_label_atom_id'
34 8 'Structure model' '_struct_conn.ptnr2_label_comp_id'
35 8 'Structure model' '_struct_conn.ptnr2_label_seq_id'
36 8 'Structure model' '_struct_conn.ptnr2_symmetry'
37 8 'Structure model' '_struct_conn_type.id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELXL-97 refinement . ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
SHELX phasing . ? 4
#
_pdbx_entry_details.entry_id 1HHY
_pdbx_entry_details.compound_details
;BALHIMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS
A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY TWO MONOSACCHARIDES: A D-GLUCOSE
AND A 4-OXO-VANCOSAMINE.
HERE, DEGLUCOBALHIMYCIN IS REPRESENTED GROUPING TOGETHER THE
SEQUENCE (SEQRES) AND ONE LIGAND (HET) DVC.
GROUP: 1
NAME: DEGLUCOBALHIMYCIN
CHAIN: A, B
COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7
COMPONENT_2: SUGAR RESIDUES 9
DESCRIPTION: DEGLUCOBALHIMYCIN LACKS THE D-GLUCOSE
COMPONENT OF BALHIMYCIN CONSISTING OF THE
TRICYCLIC HEPTAPEPTIDE AND 4-OXO-VANCOSAMINE
ONLY LINKED TO RESIDUE 6.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CA A MLU 1 ? B C A MLU 1 ? B N A OMZ 2 ? B 100.54 117.20 -16.66 2.20 Y
2 1 O A MLU 1 ? B C A MLU 1 ? B N A OMZ 2 ? B 138.25 122.70 15.55 1.60 Y
3 1 C A MLU 1 ? B N A OMZ 2 ? B CA A OMZ 2 ? ? 97.44 121.70 -24.26 2.50 Y
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' DVC
3 D-ALANINE DAL
4 'SODIUM ION' NA
5 S-1,2-PROPANEDIOL PGO
6 water HOH
#