data_1HHY # _entry.id 1HHY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HHY PDBE EBI-5733 WWPDB D_1290005733 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GO6 unspecified 'CRYSTAL STRUCTURE OF BALHIMYCIN COMPLEXED WITH THE PEPTIDE LYS-DAL-DAL' PDB 1HHU unspecified 'CRYSTAL STRUCTURE OF BALHIMYCIN COMPLEXED WITH DAL-DAL' PDB 1HHZ unspecified 'CRYSTAL STRUCTURE OF DEGLUCOBALHIMYCIN COPMLEXED WITH CELL WALL PENTAPEPTIDE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HHY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-12-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lehmann, C.' 1 'Bunkoczi, G.' 2 'Sheldrick, G.M.' 3 'Vertesy, L.' 4 # _citation.id primary _citation.title 'Structures of Glycopeptide Antibiotics with Peptides that Model Bacterial Cell-Wall Precursors' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 318 _citation.page_first 723 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12054818 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00146-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lehmann, C.' 1 ? primary 'Bunkoczi, G.' 2 ? primary 'Vertesy, L.' 3 ? primary 'Sheldrick, G.M.' 4 ? # _cell.entry_id 1HHY _cell.length_a 48.444 _cell.length_b 48.444 _cell.length_c 43.086 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HHY _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DEGLUCOBALHIMYCIN 1149.977 2 ? ? ? ? 2 non-polymer man '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' 177.198 2 ? ? ? ? 3 non-polymer syn D-ALANINE 89.093 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn S-1,2-PROPANEDIOL 76.094 1 ? ? ? ? 6 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' _entity_poly.pdbx_seq_one_letter_code_can XXNGGYX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'AMYCOLATOPSIS SP.' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 37632 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00707 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00707 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HHY A 1 ? 7 ? NOR00707 1 ? 7 ? 1 7 2 1 1HHY B 1 ? 7 ? NOR00707 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DVC 'L-saccharide, alpha linking' . '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' ? 'C7 H15 N O4' 177.198 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 PGO non-polymer . S-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094 # _exptl.entry_id 1HHY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 31.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.3M CIT, PH=7, 30% 1,2-PROPANEDIOL, pH 7.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9076 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.9076 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HHY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.060 _reflns.d_resolution_high 0.890 _reflns.number_obs 22973 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.02980 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 62.9300 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.390 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.89 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 98.0 _reflns_shell.Rmerge_I_obs 0.08000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 28.950 _reflns_shell.pdbx_redundancy 7.45 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HHY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 22768 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.06 _refine.ls_d_res_high 0.89 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs 0.1212 _refine.ls_R_factor_all 0.1217 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1394 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1127 _refine.ls_number_parameters 2450 _refine.ls_number_restraints 2978 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'DIRECT METHODS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details SHELLS _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1HHY _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 156.00 _refine_analyze.occupancy_sum_non_hydrogen 261.13 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 160 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 264 _refine_hist.d_res_high 0.89 _refine_hist.d_res_low 30.06 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.096 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.102 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.060 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.112 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1HHY _pdbx_refine.R_factor_all_no_cutoff 0.1217 _pdbx_refine.R_factor_obs_no_cutoff 0.1212 _pdbx_refine.free_R_factor_no_cutoff 0.1394 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1127 _pdbx_refine.R_factor_all_4sig_cutoff 0.1209 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1204 _pdbx_refine.free_R_factor_4sig_cutoff 0.1380 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.9 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1100 _pdbx_refine.number_reflns_obs_4sig_cutoff 22298 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.309860 _struct_ncs_oper.matrix[1][2] -0.758630 _struct_ncs_oper.matrix[1][3] -0.573120 _struct_ncs_oper.matrix[2][1] -0.760620 _struct_ncs_oper.matrix[2][2] -0.559470 _struct_ncs_oper.matrix[2][3] 0.329320 _struct_ncs_oper.matrix[3][1] -0.570470 _struct_ncs_oper.matrix[3][2] 0.333880 _struct_ncs_oper.matrix[3][3] -0.750390 _struct_ncs_oper.vector[1] 37.06617 _struct_ncs_oper.vector[2] 35.15608 _struct_ncs_oper.vector[3] 37.59990 # _struct.entry_id 1HHY _struct.title 'Deglucobalhimycin in complex with D-Ala-D-Ala' _struct.pdbx_descriptor DEGLUCOBALHIMYCIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HHY _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, GLYCOPEPTIDE, CELL WALL PEPTIDE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 5 ? K N N 4 ? L N N 6 ? M N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C A ? ? 1_555 A OMZ 2 N A ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.410 ? ? covale2 covale both ? A MLU 1 C B ? ? 1_555 A OMZ 2 N B ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale3 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.237 ? ? covale4 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C3 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale5 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale6 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale7 covale none ? A GHP 4 C5 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale9 covale none ? A GHP 5 C5 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.472 ? ? covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale11 covale one ? A OMY 6 ODE ? ? ? 1_555 C DVC . C1 ? ? A OMY 6 A DVC 9 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale12 covale both ? D DAL . C ? ? ? 1_555 E DAL . N ? ? A DAL 11 A DAL 12 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale13 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale14 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale15 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C3 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale16 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale18 covale none ? B GHP 4 C5 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale19 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale20 covale none ? B GHP 5 C5 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.468 ? ? covale21 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale22 covale one ? B OMY 6 ODE ? ? ? 1_555 G DVC . C1 ? ? B OMY 6 B DVC 9 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale23 covale both ? H DAL . C ? ? ? 1_555 I DAL . N ? ? B DAL 11 B DAL 12 1_555 ? ? ? ? ? ? ? 1.301 ? ? metalc1 metalc ? ? A MLU 1 N A ? ? 1_555 F NA . NA ? ? A MLU 1 A NA 1001 1_555 ? ? ? ? ? ? ? 3.127 ? ? metalc2 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 1001 A HOH 2002 1_555 ? ? ? ? ? ? ? 3.170 ? ? metalc3 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 1001 A HOH 2022 10_666 ? ? ? ? ? ? ? 3.105 ? ? metalc4 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 1001 A HOH 2023 1_555 ? ? ? ? ? ? ? 3.179 ? ? metalc5 metalc ? ? J PGO . O2 ? ? ? 3_565 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc6 metalc ? ? J PGO . O1 ? ? ? 1_555 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc7 metalc ? ? J PGO . O1 ? ? ? 2_665 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc8 metalc ? ? J PGO . O2 ? ? ? 1_555 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc9 metalc ? ? J PGO . O2 ? ? ? 2_665 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc10 metalc ? ? J PGO . O1 ? ? ? 3_565 K NA . NA ? ? B PGO 1001 B NA 1002 1_555 ? ? ? ? ? ? ? 2.466 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 -1.10 2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 2.90 # _database_PDB_matrix.entry_id 1HHY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HHY _atom_sites.fract_transf_matrix[1][1] 0.020642 _atom_sites.fract_transf_matrix[1][2] 0.011918 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023836 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023209 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 5 GHP GHP A . n A 1 6 OMY 6 6 6 OMY OMY A . n A 1 7 3FG 7 7 7 3FG 3FG A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP GHP B . n B 1 5 GHP 5 5 5 GHP GHP B . n B 1 6 OMY 6 6 6 OMY OMY B . n B 1 7 3FG 7 7 7 3FG 3FG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DVC 1 9 9 DVC DVC A . D 3 DAL 1 11 11 DAL DAL A . E 3 DAL 1 12 12 DAL DAL A . F 4 NA 1 1001 1001 NA NA A . G 2 DVC 1 9 9 DVC DVC B . H 3 DAL 1 11 11 DAL DAL B . I 3 DAL 1 12 12 DAL DAL B . J 5 PGO 1 1001 1001 PGO PGO B . K 4 NA 1 1002 1002 NA NA B . L 6 HOH 1 2001 2001 HOH HOH A . L 6 HOH 2 2002 2002 HOH HOH A . L 6 HOH 3 2003 2003 HOH HOH A . L 6 HOH 4 2004 2004 HOH HOH A . L 6 HOH 5 2005 2005 HOH HOH A . L 6 HOH 6 2006 2006 HOH HOH A . L 6 HOH 7 2007 2007 HOH HOH A . L 6 HOH 8 2008 2008 HOH HOH A . L 6 HOH 9 2009 2009 HOH HOH A . L 6 HOH 10 2010 2010 HOH HOH A . L 6 HOH 11 2011 2011 HOH HOH A . L 6 HOH 12 2012 2012 HOH HOH A . L 6 HOH 13 2013 2013 HOH HOH A . L 6 HOH 14 2014 2014 HOH HOH A . L 6 HOH 15 2015 2015 HOH HOH A . L 6 HOH 16 2016 2016 HOH HOH A . L 6 HOH 17 2017 2017 HOH HOH A . L 6 HOH 18 2018 2018 HOH HOH A . L 6 HOH 19 2019 2019 HOH HOH A . L 6 HOH 20 2020 2020 HOH HOH A . L 6 HOH 21 2021 2021 HOH HOH A . L 6 HOH 22 2022 2022 HOH HOH A . L 6 HOH 23 2023 2023 HOH HOH A . M 6 HOH 1 2001 2001 HOH HOH B . M 6 HOH 2 2002 2002 HOH HOH B . M 6 HOH 3 2003 2003 HOH HOH B . M 6 HOH 4 2004 2004 HOH HOH B . M 6 HOH 5 2005 2005 HOH HOH B . M 6 HOH 6 2006 2006 HOH HOH B . M 6 HOH 7 2007 2007 HOH HOH B . M 6 HOH 8 2008 2008 HOH HOH B . M 6 HOH 9 2009 2009 HOH HOH B . M 6 HOH 10 2010 2010 HOH HOH B . M 6 HOH 11 2011 2011 HOH HOH B . M 6 HOH 12 2012 2012 HOH HOH B . M 6 HOH 13 2013 2013 HOH HOH B . M 6 HOH 14 2014 2014 HOH HOH B . M 6 HOH 15 2015 2015 HOH HOH B . M 6 HOH 16 2016 2016 HOH HOH B . M 6 HOH 17 2017 2017 HOH HOH B . M 6 HOH 18 2018 2018 HOH HOH B . M 6 HOH 19 2019 2019 HOH HOH B . M 6 HOH 20 2020 2020 HOH HOH B . M 6 HOH 21 2021 2021 HOH HOH B . M 6 HOH 22 2022 2022 HOH HOH B . M 6 HOH 23 2023 2023 HOH HOH B . M 6 HOH 24 2024 2024 HOH HOH B . M 6 HOH 25 2025 2025 HOH HOH B . M 6 HOH 26 2026 2026 HOH HOH B . M 6 HOH 27 2027 2027 HOH HOH B . M 6 HOH 28 2028 2028 HOH HOH B . M 6 HOH 29 2029 2029 HOH HOH B . M 6 HOH 30 2030 2030 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000485 _pdbx_molecule_features.name Deglucobalhimycin _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class 'Antibiotic, Antimicrobial' _pdbx_molecule_features.details ;DEGLUCOBALHIMYCIN LACKS THE D-GLUCOSE COMPONENT OF BALHIMYCIN CONSISTING OF THE TRICYCLIC HEPTAPEPTIDE AND (2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL ONLY LINKED TO RESIDUE 6. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000485 A 1 PRD_000485 C 2 PRD_000485 B 2 PRD_000485 G # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OMY 6 A OMY 6 ? TYR ? 2 B OMY 6 B OMY 6 ? TYR ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly 'PISA 1.18' dimeric 2 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dodecameric 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 A,C,D,E,F,L 3 1,2,3,4,5,6 A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 600 ? 1 MORE -10.4 ? 1 'SSA (A^2)' 2090 ? 2 'ABSA (A^2)' 880 ? 2 MORE -31.8 ? 2 'SSA (A^2)' 1920 ? 3 'ABSA (A^2)' 11060 ? 3 MORE -232.8 ? 3 'SSA (A^2)' 6560 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5000000000 -0.8660254038 0.0000000000 24.2220000000 -0.8660254038 -0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 -1.0000000000 64.6290000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -24.2220000000 -0.8660254038 -0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_556 -x+y,y,-z+3/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.6290000000 5 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 24.2220000000 0.8660254038 -0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 12_566 x,x-y+1,-z+3/2 0.5000000000 0.8660254038 0.0000000000 -24.2220000000 0.8660254038 -0.5000000000 0.0000000000 41.9537346609 0.0000000000 0.0000000000 -1.0000000000 64.6290000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B NA 1002 ? K NA . 2 1 A HOH 2005 ? L HOH . 3 1 B HOH 2010 ? M HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N A A MLU 1 ? A MLU 1 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2002 ? 1_555 27.2 ? 2 N A A MLU 1 ? A MLU 1 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2022 ? 10_666 97.2 ? 3 O ? L HOH . ? A HOH 2002 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2022 ? 10_666 112.3 ? 4 N A A MLU 1 ? A MLU 1 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2023 ? 1_555 77.1 ? 5 O ? L HOH . ? A HOH 2002 ? 1_555 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2023 ? 1_555 95.5 ? 6 O ? L HOH . ? A HOH 2022 ? 10_666 NA ? F NA . ? A NA 1001 ? 1_555 O ? L HOH . ? A HOH 2023 ? 1_555 103.7 ? 7 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 1_555 98.1 ? 8 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 2_665 159.5 ? 9 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 2_665 92.0 ? 10 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 1_555 102.2 ? 11 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 1_555 69.9 ? 12 O1 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 1_555 98.1 ? 13 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 102.2 ? 14 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 159.5 ? 15 O1 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 69.9 ? 16 O2 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O2 ? J PGO . ? B PGO 1001 ? 2_665 102.2 ? 17 O2 ? J PGO . ? B PGO 1001 ? 3_565 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 69.9 ? 18 O1 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 92.0 ? 19 O1 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 92.0 ? 20 O2 ? J PGO . ? B PGO 1001 ? 1_555 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 159.5 ? 21 O2 ? J PGO . ? B PGO 1001 ? 2_665 NA ? K NA . ? B NA 1002 ? 1_555 O1 ? J PGO . ? B PGO 1001 ? 3_565 98.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-07-25 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 2 0 2019-04-24 6 'Structure model' 2 1 2019-07-10 7 'Structure model' 2 2 2019-07-24 8 'Structure model' 2 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 8 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' 'Atomic model' 7 3 'Structure model' 'Derived calculations' 8 3 'Structure model' 'Non-polymer description' 9 3 'Structure model' Other 10 4 'Structure model' Other 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Derived calculations' 13 5 'Structure model' Other 14 5 'Structure model' 'Polymer sequence' 15 6 'Structure model' 'Data collection' 16 7 'Structure model' 'Data collection' 17 8 'Structure model' 'Data collection' 18 8 'Structure model' 'Derived calculations' 19 8 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 5 'Structure model' entity_poly 3 5 'Structure model' pdbx_database_proc 4 5 'Structure model' pdbx_database_status 5 5 'Structure model' pdbx_seq_map_depositor_info 6 5 'Structure model' struct_conn 7 6 'Structure model' diffrn_source 8 7 'Structure model' diffrn_source 9 8 'Structure model' chem_comp 10 8 'Structure model' pdbx_database_status 11 8 'Structure model' pdbx_struct_conn_angle 12 8 'Structure model' struct_conn 13 8 'Structure model' struct_conn_type 14 8 'Structure model' struct_site 15 8 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 3 5 'Structure model' '_pdbx_database_status.recvd_author_approval' 4 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 7 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 8 8 'Structure model' '_chem_comp.type' 9 8 'Structure model' '_pdbx_database_status.status_code_sf' 10 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 14 8 'Structure model' '_pdbx_struct_conn_angle.value' 15 8 'Structure model' '_struct_conn.conn_type_id' 16 8 'Structure model' '_struct_conn.id' 17 8 'Structure model' '_struct_conn.pdbx_dist_value' 18 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 8 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 20 8 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 21 8 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 8 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 8 'Structure model' '_struct_conn.ptnr1_symmetry' 29 8 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 8 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 8 'Structure model' '_struct_conn.ptnr2_symmetry' 37 8 'Structure model' '_struct_conn_type.id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELX phasing . ? 4 # _pdbx_entry_details.entry_id 1HHY _pdbx_entry_details.compound_details ;BALHIMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY TWO MONOSACCHARIDES: A D-GLUCOSE AND A 4-OXO-VANCOSAMINE. HERE, DEGLUCOBALHIMYCIN IS REPRESENTED GROUPING TOGETHER THE SEQUENCE (SEQRES) AND ONE LIGAND (HET) DVC. GROUP: 1 NAME: DEGLUCOBALHIMYCIN CHAIN: A, B COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7 COMPONENT_2: SUGAR RESIDUES 9 DESCRIPTION: DEGLUCOBALHIMYCIN LACKS THE D-GLUCOSE COMPONENT OF BALHIMYCIN CONSISTING OF THE TRICYCLIC HEPTAPEPTIDE AND 4-OXO-VANCOSAMINE ONLY LINKED TO RESIDUE 6. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A MLU 1 ? B C A MLU 1 ? B N A OMZ 2 ? B 100.54 117.20 -16.66 2.20 Y 2 1 O A MLU 1 ? B C A MLU 1 ? B N A OMZ 2 ? B 138.25 122.70 15.55 1.60 Y 3 1 C A MLU 1 ? B N A OMZ 2 ? B CA A OMZ 2 ? ? 97.44 121.70 -24.26 2.50 Y # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' DVC 3 D-ALANINE DAL 4 'SODIUM ION' NA 5 S-1,2-PROPANEDIOL PGO 6 water HOH #