HEADER HIRUDIN 30-APR-92 1HIC TITLE THE NMR SOLUTION STRUCTURE OF HIRUDIN(1-51) AND COMPARISON WITH TITLE 2 CORRESPONDING THREE-DIMENSIONAL STRUCTURES DETERMINED USING THE TITLE 3 COMPLETE 65-RESIDUE HIRUDIN POLYPEPTIDE CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIRUDIN VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 3 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 4 ORGANISM_TAXID: 6421 KEYWDS HIRUDIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SZYPERSKI,P.GUNTERT,S.R.STONE,K.WUTHRICH REVDAT 5 23-FEB-22 1HIC 1 REMARK REVDAT 4 24-FEB-09 1HIC 1 VERSN REVDAT 3 01-APR-03 1HIC 1 JRNL REVDAT 2 20-JUL-95 1HIC 1 REMARK SEQRES FTNOTE ATOM REVDAT 1 31-JAN-94 1HIC 0 JRNL AUTH T.SZYPERSKI,P.GUNTERT,S.R.STONE,K.WUTHRICH JRNL TITL NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF JRNL TITL 2 HIRUDIN(1-51) AND COMPARISON WITH CORRESPONDING JRNL TITL 3 THREE-DIMENSIONAL STRUCTURES DETERMINED USING THE COMPLETE JRNL TITL 4 65-RESIDUE HIRUDIN POLYPEPTIDE CHAIN. JRNL REF J.MOL.BIOL. V. 228 1193 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1335515 JRNL DOI 10.1016/0022-2836(92)90325-E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SZYPERSKI,P.GUNTERT,A.TULINSKY,W.BODE,R.HUBER,K.WUTHRICH REMARK 1 TITL IMPACT OF PROTEIN-PROTEIN CONTACTS ON THE CONFORMATION OF REMARK 1 TITL 2 THROMBIN-BOUND HIRUDIN STUDIED BY COMPARISON WITH THE NMR REMARK 1 TITL 3 SOLUTION STRUCTURE OF HIRUDIN(1-51) REMARK 1 REF J.MOL.BIOL. V. 228 1206 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.HARUYAMA,K.WUTHRICH REMARK 1 TITL CONFORMATION OF RECOMBINANT DESULFATOHIRUDIN IN AQUEOUS REMARK 1 TITL 2 SOLUTION DETERMINED BY NUCLEAR MAGNETIC RESONANCE REMARK 1 REF BIOCHEMISTRY V. 28 4301 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.J.M.FOLKERS,G.M.CLORE,P.C.DRISCOLL,J.DODT,S.KOHLER, REMARK 1 AUTH 2 A.M.GRONENBORN REMARK 1 TITL SOLUTION STRUCTURE OF RECOMBINANT HIRUDIN AND THE LYS 47-GLU REMARK 1 TITL 2 MUTANT: A NUCLEAR MAGNETIC RESONANCE AND HYBRID REMARK 1 TITL 3 GEOMETRY-DYNAMICAL SIMULATED ANNEALING STUDY REMARK 1 REF BIOCHEMISTRY V. 28 2601 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA, AMBER 3.0 REMARK 3 AUTHORS : GUNTERT,BRAUN,WUTHRICH (DIANA), REMARK 3 SINGH,WEINER,CALDWELL,KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HIC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173861. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 CYS A 14 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 4 CYS A 14 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 9 CYS A 6 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 9 CYS A 14 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 10 CYS A 14 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 11 CYS A 14 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 17 CYS A 14 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 20 CYS A 14 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 16 -63.06 -143.14 REMARK 500 1 ASP A 33 34.87 153.09 REMARK 500 1 SER A 50 144.58 61.19 REMARK 500 3 GLU A 8 145.80 -176.12 REMARK 500 3 CYS A 16 -63.72 -109.94 REMARK 500 3 SER A 32 69.96 -101.35 REMARK 500 3 GLN A 49 158.04 -48.87 REMARK 500 3 SER A 50 67.11 -150.28 REMARK 500 4 CYS A 16 -64.43 -95.23 REMARK 500 4 SER A 32 43.22 -144.34 REMARK 500 4 ASP A 33 37.04 170.27 REMARK 500 4 GLU A 43 147.35 -170.21 REMARK 500 4 SER A 50 168.80 65.45 REMARK 500 5 SER A 50 91.16 67.23 REMARK 500 6 CYS A 16 -63.76 -131.14 REMARK 500 6 SER A 50 -60.72 -101.33 REMARK 500 7 CYS A 16 -64.15 -142.07 REMARK 500 7 ASP A 33 73.44 95.75 REMARK 500 8 SER A 32 72.31 -157.45 REMARK 500 9 CYS A 16 -68.40 -131.90 REMARK 500 9 GLU A 43 144.95 68.49 REMARK 500 9 SER A 50 151.56 74.09 REMARK 500 10 CYS A 16 -63.36 -106.94 REMARK 500 10 SER A 32 42.09 -143.67 REMARK 500 10 ASP A 33 28.38 160.09 REMARK 500 10 GLU A 43 83.75 42.11 REMARK 500 11 THR A 7 -39.21 -134.45 REMARK 500 11 LEU A 13 38.50 71.38 REMARK 500 11 CYS A 16 -63.98 -120.69 REMARK 500 11 SER A 32 67.67 -101.83 REMARK 500 12 CYS A 16 -62.93 -127.66 REMARK 500 13 LEU A 13 53.36 74.73 REMARK 500 13 CYS A 16 -63.24 -139.21 REMARK 500 13 ASP A 33 67.39 38.74 REMARK 500 13 GLU A 43 144.90 58.50 REMARK 500 13 GLN A 49 151.53 -44.24 REMARK 500 14 CYS A 16 -63.17 -107.32 REMARK 500 14 LEU A 30 73.91 -69.73 REMARK 500 14 ASP A 33 28.02 49.63 REMARK 500 14 SER A 50 -75.64 67.48 REMARK 500 15 CYS A 16 -63.64 -127.64 REMARK 500 15 ASP A 33 28.42 152.89 REMARK 500 15 GLU A 43 83.51 72.06 REMARK 500 15 SER A 50 -64.77 -172.93 REMARK 500 16 CYS A 16 -63.20 -138.89 REMARK 500 16 SER A 32 94.61 -176.38 REMARK 500 16 GLU A 43 154.97 73.68 REMARK 500 16 SER A 50 162.15 63.64 REMARK 500 17 LEU A 15 108.88 -57.68 REMARK 500 17 CYS A 16 -63.15 -99.18 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 32 ASP A 33 1 -141.51 REMARK 500 SER A 32 ASP A 33 10 -144.17 REMARK 500 SER A 32 ASP A 33 15 -140.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 3 0.07 SIDE CHAIN REMARK 500 11 TYR A 3 0.07 SIDE CHAIN REMARK 500 17 TYR A 3 0.08 SIDE CHAIN REMARK 500 19 TYR A 3 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1HIC A 1 51 UNP P01050 ITH1_HIRME 1 51 SEQRES 1 A 51 VAL VAL TYR THR ASP CYS THR GLU SER GLY GLN ASN LEU SEQRES 2 A 51 CYS LEU CYS GLU GLY SER ASN VAL CYS GLY GLN GLY ASN SEQRES 3 A 51 LYS CYS ILE LEU GLY SER ASP GLY GLU LYS ASN GLN CYS SEQRES 4 A 51 VAL THR GLY GLU GLY THR PRO LYS PRO GLN SER HIS SHEET 1 1 2 CYS A 14 CYS A 16 0 SHEET 2 1 2 ASN A 20 CYS A 22 -1 O CYS A 22 N CYS A 14 SHEET 1 2 2 LYS A 27 GLY A 31 0 SHEET 2 2 2 LYS A 36 VAL A 40 -1 N GLN A 38 O ILE A 29 SSBOND 1 CYS A 6 CYS A 14 1555 1555 2.07 SSBOND 2 CYS A 16 CYS A 28 1555 1555 2.16 SSBOND 3 CYS A 22 CYS A 39 1555 1555 2.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1