HEADER EXOCYTOSIS 05-MAR-03 1HK6 TITLE RAL BINDING DOMAIN FROM SEC5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOCYST COMPLEX COMPONENT SEC5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IPT DOMAIN, RESIDUES 5-97; COMPND 5 SYNONYM: SEC5L1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: HIS-MET AT N-TERMINUS FROM CLONING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET16B KEYWDS IPT RAL SEC5 EXOCYST, EXOCYTOSIS, PROTEIN TRANSPORT, IMMUNOGLOBULIN KEYWDS 2 FOLD EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR H.R.MOTT,D.NIETLISPACH,L.J.HOPKINS,G.MIREY,J.H.CAMONIS,D.OWEN REVDAT 4 28-MAR-18 1HK6 1 SOURCE JRNL REVDAT 3 24-FEB-09 1HK6 1 VERSN REVDAT 2 08-MAY-03 1HK6 1 JRNL REVDAT 1 13-MAR-03 1HK6 0 JRNL AUTH H.R.MOTT,D.NIETLISPACH,L.J.HOPKINS,G.MIREY,J.H.CAMONIS, JRNL AUTH 2 D.OWEN JRNL TITL STRUCTURE OF THE GTPASE-BINDING DOMAIN OF SEC5 AND JRNL TITL 2 ELUCIDATION OF ITS RAL BINDING SITE. JRNL REF J. BIOL. CHEM. V. 278 17053 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12624092 JRNL DOI 10.1074/JBC.M300155200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL ABOVE REMARK 4 REMARK 4 1HK6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1290012285. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS/ARIA1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING 15N-LEBELLED AND 13C,15N REMARK 210 -LABELLED SEC5 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PART OF THE EXOCYST COMPLEX INVOLVED IN THE DOCKING REMARK 400 OF EXOCYSTIC VESICLES WITH FUSION SITES ON THE REMARK 400 PLASMA MEMBRANE. REMARK 400 THE EXOCYST COMPLEX IS COMPOSED OF VARIOUS SUBUNITS NAMED REMARK 400 AS SEC3,SEC5,SEC6,SEC8,SEC10,SEC15,EXO70 AND EXO84. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 11 52.47 -168.82 REMARK 500 1 PRO A 15 -160.14 -79.71 REMARK 500 1 ASN A 16 21.07 -173.22 REMARK 500 1 GLU A 17 127.45 177.78 REMARK 500 1 THR A 33 43.51 -94.97 REMARK 500 1 CYS A 48 41.87 -152.47 REMARK 500 1 MET A 55 -52.40 -136.36 REMARK 500 1 ALA A 57 41.67 -80.48 REMARK 500 1 SER A 58 -47.10 -175.27 REMARK 500 1 CYS A 62 143.82 -170.93 REMARK 500 1 LYS A 68 -43.90 -147.84 REMARK 500 1 ASN A 69 -123.40 -76.15 REMARK 500 1 ASP A 70 42.82 -170.41 REMARK 500 1 LYS A 71 -46.44 -164.55 REMARK 500 2 THR A 11 48.80 -171.05 REMARK 500 2 GLU A 17 132.24 179.73 REMARK 500 2 CYS A 48 38.03 -149.72 REMARK 500 2 MET A 55 -44.11 -143.12 REMARK 500 2 CYS A 62 136.67 -170.47 REMARK 500 2 VAL A 64 -143.61 -66.63 REMARK 500 2 ASN A 69 -127.30 -70.86 REMARK 500 2 ASP A 70 -53.90 -148.94 REMARK 500 2 SER A 86 127.81 -170.99 REMARK 500 3 MET A 4 139.49 -175.15 REMARK 500 3 ARG A 5 57.25 -171.16 REMARK 500 3 THR A 11 47.26 -153.70 REMARK 500 3 GLU A 17 131.30 177.57 REMARK 500 3 ILE A 39 -39.94 -143.57 REMARK 500 3 CYS A 48 40.03 -152.18 REMARK 500 3 MET A 55 -42.77 -149.83 REMARK 500 3 ALA A 57 34.39 -74.83 REMARK 500 3 SER A 58 30.13 -177.99 REMARK 500 3 LYS A 68 -50.01 -132.11 REMARK 500 3 ASP A 70 -47.03 -179.57 REMARK 500 3 LYS A 71 -126.68 -97.95 REMARK 500 3 THR A 87 40.75 -107.58 REMARK 500 4 THR A 11 44.51 -148.00 REMARK 500 4 ASN A 16 30.18 -92.93 REMARK 500 4 GLU A 17 131.21 178.08 REMARK 500 4 THR A 33 41.52 -90.03 REMARK 500 4 ILE A 39 20.71 -147.26 REMARK 500 4 CYS A 48 39.01 -153.09 REMARK 500 4 MET A 55 -48.37 -138.89 REMARK 500 4 ALA A 57 36.23 -78.52 REMARK 500 4 SER A 58 -43.10 -177.29 REMARK 500 4 LYS A 68 -48.91 -135.28 REMARK 500 4 ASN A 69 -118.91 -77.95 REMARK 500 4 ASP A 70 -44.09 -152.61 REMARK 500 5 MET A 4 139.90 -172.90 REMARK 500 5 THR A 11 41.18 -147.01 REMARK 500 REMARK 500 THIS ENTRY HAS 335 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 HIS A 3, INSERTION CLONING ARTEFACT REMARK 999 MET A 4, INSERTION CLONING ARTEFACT DBREF 1HK6 A 3 4 PDB 1HK6 1HK6 3 4 DBREF 1HK6 A 5 97 UNP Q9D4H1 SEC5_MOUSE 5 97 SEQRES 1 A 95 HIS MET ARG GLN PRO PRO LEU VAL THR GLY ILE SER PRO SEQRES 2 A 95 ASN GLU GLY ILE PRO TRP THR LYS VAL THR ILE ARG GLY SEQRES 3 A 95 GLU ASN LEU GLY THR GLY PRO THR ASP LEU ILE GLY LEU SEQRES 4 A 95 THR ILE CYS GLY HIS ASN CYS LEU LEU THR ALA GLU TRP SEQRES 5 A 95 MET SER ALA SER LYS ILE VAL CYS ARG VAL GLY GLN ALA SEQRES 6 A 95 LYS ASN ASP LYS GLY ASP ILE ILE VAL THR THR LYS SER SEQRES 7 A 95 GLY GLY LYS GLY THR SER THR VAL SER PHE LYS LEU LEU SEQRES 8 A 95 LYS PRO GLU LYS SHEET 1 AA 5 GLU A 53 TRP A 54 0 SHEET 2 AA 5 ILE A 60 ARG A 63 -1 O VAL A 61 N GLU A 53 SHEET 3 AA 5 LYS A 23 GLU A 29 -1 O VAL A 24 N CYS A 62 SHEET 4 AA 5 LEU A 9 ILE A 13 -1 O LEU A 9 N GLU A 29 SHEET 5 AA 5 THR A 85 SER A 86 1 O THR A 85 N VAL A 10 SHEET 1 AB 3 HIS A 46 ASN A 47 0 SHEET 2 AB 3 LEU A 41 ILE A 43 -1 O ILE A 43 N HIS A 46 SHEET 3 AB 3 ILE A 74 VAL A 76 -1 O ILE A 75 N THR A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1