HEADER HYDROLASE/HYDROLASE INHIBITOR 28-AUG-94 1HLT TITLE THE STRUCTURE OF A NONADECAPEPTIDE OF THE FIFTH EGF DOMAIN OF TITLE 2 THROMBOMODULIN COMPLEXED WITH THROMBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-THROMBIN (SMALL SUBUNIT); COMPND 3 CHAIN: L, J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALPHA-THROMBIN (LARGE SUBUNIT); COMPND 7 CHAIN: H, K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: THROMBOMODULIN; COMPND 11 CHAIN: R; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SERINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TULINSKY,I.I.MATHEWS REVDAT 7 13-NOV-24 1HLT 1 REMARK REVDAT 6 13-MAR-24 1HLT 1 SOURCE REMARK LINK REVDAT 5 14-AUG-19 1HLT 1 REMARK REVDAT 4 17-JUL-19 1HLT 1 REMARK LINK REVDAT 3 13-JUL-11 1HLT 1 VERSN REVDAT 2 24-FEB-09 1HLT 1 VERSN REVDAT 1 20-DEC-94 1HLT 0 JRNL AUTH I.I.MATHEWS,K.P.PADMANABHAN,A.TULINKSY,J.E.SADLER JRNL TITL STRUCTURE OF A NONADECAPEPTIDE OF THE FIFTH EGF DOMAIN OF JRNL TITL 2 THROMBOMODULIN COMPLEXED WITH THROMBIN. JRNL REF BIOCHEMISTRY V. 33 13547 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 7947765 JRNL DOI 10.1021/BI00250A006 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NAGASHIMA,E.LUNDH,J.C.LEONARD,J.F.PARKINSON REMARK 1 TITL ALANINE-SCANNING MUTAGENESIS OF THE EPIDERMAL GROWTH REMARK 1 TITL 2 FACTOR-LIKE DOMAINS OF HUMAN THROMBOMODULIN IDENTIFIES REMARK 1 TITL 3 CRITICAL RESIDUES FOR ITS COFACTOR ACTIVITY REMARK 1 REF J.BIOL.CHEM. V. 268 2888 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN, REMARK 1 AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE REMARK 1 TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES OF REMARK 1 TITL 2 ALPHA-THROMBIN REMARK 1 REF J.MOL.BIOL. V. 221 1379 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4575 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.790 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.510 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.510 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 162.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 244.35000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, J, K, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA H 149A REMARK 465 ASN H 149B REMARK 465 VAL H 149C REMARK 465 GLY H 149D REMARK 465 LYS H 149E REMARK 465 PHE H 245 REMARK 465 GLY H 246 REMARK 465 GLU H 247 REMARK 465 ALA K 149A REMARK 465 ASN K 149B REMARK 465 VAL K 149C REMARK 465 GLY K 149D REMARK 465 LYS K 149E REMARK 465 PHE K 245 REMARK 465 GLY K 246 REMARK 465 GLU K 247 REMARK 465 ASP R 425 REMARK 465 GLU R 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE L 14K CB CG1 CG2 CD1 REMARK 470 LYS H 87 CD CE NZ REMARK 470 TRP H 148 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP H 148 CZ3 CH2 REMARK 470 THR H 149 CB OG1 CG2 REMARK 470 ARG H 221A CD NE CZ NH1 NH2 REMARK 470 LYS H 240 CD CE NZ REMARK 470 GLN H 244 CB CG CD OE1 NE2 REMARK 470 ILE J 14K CB CG1 CG2 CD1 REMARK 470 LYS K 87 CD CE NZ REMARK 470 TRP K 148 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP K 148 CZ3 CH2 REMARK 470 THR K 149 CB OG1 CG2 REMARK 470 ARG K 221A CD NE CZ NH1 NH2 REMARK 470 LYS K 240 CD CE NZ REMARK 470 GLN K 244 CB CG CD OE1 NE2 REMARK 470 CYS R 409 SG REMARK 470 GLU R 411 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER K 195 C3 0G6 K 1 2.00 REMARK 500 OG SER K 195 O2 0G6 K 1 2.04 REMARK 500 OG SER H 195 O2 0G6 H 1 2.09 REMARK 500 NH1 ARG K 73 O PRO K 152 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1A CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG L 4 CD - NE - CZ ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG L 4 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 GLU L 13 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG L 14D CG - CD - NE ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG L 14D CD - NE - CZ ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG L 14D NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG L 14D NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP H 21 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU H 33 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU H 33 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG H 35 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU H 53 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 TYR H 60A CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR H 60A CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP H 63 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG H 73 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG H 73 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG H 75 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR H 76 CB - CG - CD2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG H 93 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG H 93 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG H 93 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG H 101 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP H 102 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ALA H 113 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP H 125 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG H 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLU H 127 CG - CD - OE1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG H 137 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 GLY H 140 N - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG H 175 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG H 175 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE H 181 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 CYS H 182 CB - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG H 187 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 CYS H 191 CA - CB - SG ANGL. DEV. = 10.3 DEGREES REMARK 500 MET H 201 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG H 206 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 VAL H 213 CA - C - O ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG H 221A CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 TYR H 225 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG H 233 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG H 233 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP H 243 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP J 1A N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 GLU J 8 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU J 14C CG - CD - OE1 ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG J 14D CD - NE - CZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG J 14D NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 109 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS L 1 147.31 -24.74 REMARK 500 PHE L 7 -82.55 -134.52 REMARK 500 LYS L 9 -77.14 -91.90 REMARK 500 LYS L 10 -22.07 -36.19 REMARK 500 SER L 11 60.03 63.43 REMARK 500 LYS L 14A -38.86 -26.81 REMARK 500 SER H 27 74.16 -153.33 REMARK 500 LEU H 41 -75.27 -106.70 REMARK 500 ARG H 50 -6.41 -157.44 REMARK 500 LEU H 59 -64.45 -91.78 REMARK 500 TYR H 60A 66.76 -158.57 REMARK 500 PRO H 60B -36.93 -33.06 REMARK 500 ASN H 60G 101.49 -173.41 REMARK 500 GLU H 61 3.80 -59.21 REMARK 500 HIS H 71 -49.20 -148.99 REMARK 500 GLU H 77 99.04 -43.92 REMARK 500 ILE H 79 -66.87 -104.30 REMARK 500 GLU H 97A -71.96 -104.29 REMARK 500 ASN H 98 30.21 -145.71 REMARK 500 ARG H 101 69.08 77.49 REMARK 500 ASN H 143 134.73 -32.23 REMARK 500 TRP H 148 -19.38 -150.20 REMARK 500 LEU H 155 152.95 -38.56 REMARK 500 ARG H 165 -60.54 -22.16 REMARK 500 VAL H 167 -52.80 -29.06 REMARK 500 PRO H 186 -14.62 -48.57 REMARK 500 ARG H 187 -165.99 -117.69 REMARK 500 ASP H 189 157.99 165.87 REMARK 500 PHE H 204A -64.30 -93.50 REMARK 500 VAL H 213 101.15 -48.89 REMARK 500 CYS J 1 135.27 -36.55 REMARK 500 PHE J 7 -89.29 -132.22 REMARK 500 LYS J 14A -5.87 -51.98 REMARK 500 THR J 14B -12.79 -146.95 REMARK 500 SER K 36A 117.07 -173.19 REMARK 500 CYS K 42 -163.85 -170.32 REMARK 500 ARG K 50 14.40 -149.07 REMARK 500 TYR K 60A 67.63 -158.49 REMARK 500 PRO K 60B -54.47 -28.56 REMARK 500 ASN K 60G 98.68 -167.22 REMARK 500 HIS K 71 -61.49 -147.77 REMARK 500 GLU K 77 78.91 -56.54 REMARK 500 GLU K 97A -71.53 -104.93 REMARK 500 LEU K 99 18.61 55.76 REMARK 500 ARG K 101 67.12 74.95 REMARK 500 ALA K 113 107.57 -53.74 REMARK 500 SER K 115 -169.55 -101.74 REMARK 500 ALA K 129A -79.84 -73.72 REMARK 500 TRP K 148 -12.03 -155.63 REMARK 500 LEU K 155 156.14 -49.14 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 67 0.09 SIDE CHAIN REMARK 500 ARG H 73 0.13 SIDE CHAIN REMARK 500 ARG H 75 0.26 SIDE CHAIN REMARK 500 ARG H 77A 0.10 SIDE CHAIN REMARK 500 ARG H 206 0.17 SIDE CHAIN REMARK 500 ARG J 14D 0.22 SIDE CHAIN REMARK 500 ARG K 50 0.13 SIDE CHAIN REMARK 500 ARG K 73 0.23 SIDE CHAIN REMARK 500 ARG K 75 0.30 SIDE CHAIN REMARK 500 ARG K 206 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE INHIBITOR IS COVALENTLY CONNECTED TO ACTIVE SITE. THE UNBOUND REMARK 600 FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON REMARK 600 REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT REMARK 600 BOND TO SER 195 FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO REMARK 600 NE2 OF HIS 57 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 H 1 REMARK 630 0G6 K 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0G6 H 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0G6 K 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHYMOTRYPSIN NUMBERING SYSTEM IS USED BASED ON THE TOPOLOGICAL REMARK 999 ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, REMARK 999 EMBO J. 8, 3467-3475). DBREF 1HLT L 1 14 UNP P00734 THRB_HUMAN 334 360 DBREF 1HLT H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1HLT J 1 14 UNP P00734 THRB_HUMAN 334 360 DBREF 1HLT K 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1HLT R 408 426 UNP P07204 TRBM_HUMAN 426 444 SEQRES 1 L 27 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 L 27 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR SEQRES 3 L 27 ILE SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 J 27 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 J 27 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR SEQRES 3 J 27 ILE SEQRES 1 K 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 K 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 K 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 K 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 K 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 K 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 K 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 K 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 K 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 K 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 K 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 K 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 K 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 K 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 K 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 K 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 K 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 K 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 K 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 K 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 R 19 GLU CYS PRO GLU GLY TYR ILE LEU ASP ASP GLY PHE ILE SEQRES 2 R 19 CYS THR ASP ILE ASP GLU HET 0G6 H 1 30 HET 0G6 K 1 30 HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETSYN 0G6 PPACK FORMUL 6 0G6 2(C21 H34 CL N6 O3 1+) FORMUL 8 HOH *121(H2 O) HELIX 1 H1H ALA H 55 LEU H 60 1 6 HELIX 2 H2H GLU H 164 SER H 171 1 8 HELIX 3 H3H ASP H 125 LEU H 129C 1 8 HELIX 4 H4H VAL H 231 GLN H 244 1 14 HELIX 5 H1K ALA K 55 LEU K 60 1 6 HELIX 6 H2K GLU K 164 SER K 171 1 8 HELIX 7 H3K ASP K 125 LEU K 129C 1 8 HELIX 8 H4K VAL K 231 GLN K 244 1 14 SHEET 1 B1H 7 PRO H 28 ARG H 35 0 SHEET 2 B1H 7 CYS H 42 ASP H 49 -1 SHEET 3 B1H 7 ARG H 50 ALA H 56 -1 SHEET 4 B1H 7 ARG H 101 LYS H 110 -1 SHEET 5 B1H 7 LYS H 81 PRO H 92 -1 SHEET 6 B1H 7 ASP H 63 GLY H 69 -1 SHEET 7 B1H 7 PRO H 28 ARG H 35 -1 SHEET 1 B2H 7 GLY H 133 TRP H 141 0 SHEET 2 B2H 7 LEU H 155 ILE H 162 -1 SHEET 3 B2H 7 ASN H 179 PRO H 186 -1 SHEET 4 B2H 7 GLY H 223 THR H 229 -1 SHEET 5 B2H 7 ILE H 212 GLU H 217 -1 SHEET 6 B2H 7 GLY H 193 MET H 201 -1 SHEET 7 B2H 7 GLY H 133 TRP H 141 -1 SHEET 1 B1K 7 PRO K 28 ARG K 35 0 SHEET 2 B1K 7 CYS K 42 ASP K 49 -1 SHEET 3 B1K 7 ARG K 50 ALA K 56 -1 SHEET 4 B1K 7 ARG K 101 LYS K 110 -1 SHEET 5 B1K 7 LYS K 81 PRO K 92 -1 SHEET 6 B1K 7 ASP K 63 GLY K 69 -1 SHEET 7 B1K 7 PRO K 28 ARG K 35 -1 SHEET 1 B2K 7 GLY K 133 TRP K 141 0 SHEET 2 B2K 7 LEU K 155 ILE K 162 -1 SHEET 3 B2K 7 ASN K 179 PRO K 186 -1 SHEET 4 B2K 7 GLY K 223 THR K 229 -1 SHEET 5 B2K 7 ILE K 212 GLU K 217 -1 SHEET 6 B2K 7 GLY K 193 MET K 201 -1 SHEET 7 B2K 7 GLY K 133 TRP K 141 -1 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.01 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.09 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.01 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.01 SSBOND 5 CYS J 1 CYS K 122 1555 1555 1.99 SSBOND 6 CYS K 42 CYS K 58 1555 1555 2.05 SSBOND 7 CYS K 168 CYS K 182 1555 1555 2.03 SSBOND 8 CYS K 191 CYS K 220 1555 1555 1.99 LINK C3 0G6 H 1 NE2 HIS H 57 1555 1555 1.59 LINK C2 0G6 H 1 OG SER H 195 1555 1555 1.72 LINK C3 0G6 K 1 NE2 HIS K 57 1555 1555 1.66 LINK C2 0G6 K 1 OG SER K 195 1555 1555 1.77 CISPEP 1 SER H 36A PRO H 37 0 -0.65 CISPEP 2 SER K 36A PRO K 37 0 -0.83 SITE 1 AC1 14 HIS H 57 TYR H 60A ASN H 98 LEU H 99 SITE 2 AC1 14 ILE H 174 ASP H 189 ALA H 190 CYS H 191 SITE 3 AC1 14 SER H 195 SER H 214 TRP H 215 GLY H 216 SITE 4 AC1 14 GLY H 219 HOH H 915 SITE 1 AC2 14 HIS K 57 TYR K 60A TRP K 60D LEU K 99 SITE 2 AC2 14 ILE K 174 ASP K 189 ALA K 190 CYS K 191 SITE 3 AC2 14 GLY K 193 SER K 195 SER K 214 TRP K 215 SITE 4 AC2 14 GLY K 216 GLY K 219 CRYST1 50.900 50.900 325.800 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003069 0.00000 MTRIX1 1 -1.000000 0.000000 0.000700 -0.00779 1 MTRIX2 1 0.000000 1.000000 -0.001700 -0.04665 1 MTRIX3 1 -0.000700 -0.001700 -1.000000 -10.04110 1