HEADER HYDROLASE/HYDROLASE INHIBITOR 28-AUG-94 1HLT
TITLE THE STRUCTURE OF A NONADECAPEPTIDE OF THE FIFTH EGF DOMAIN OF
TITLE 2 THROMBOMODULIN COMPLEXED WITH THROMBIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA-THROMBIN (SMALL SUBUNIT);
COMPND 3 CHAIN: L, J;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: ALPHA-THROMBIN (LARGE SUBUNIT);
COMPND 7 CHAIN: H, K;
COMPND 8 ENGINEERED: YES;
COMPND 9 MOL_ID: 3;
COMPND 10 MOLECULE: THROMBOMODULIN;
COMPND 11 CHAIN: R;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 MOL_ID: 2;
SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 7 ORGANISM_COMMON: HUMAN;
SOURCE 8 ORGANISM_TAXID: 9606;
SOURCE 9 MOL_ID: 3;
SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 11 ORGANISM_COMMON: HUMAN;
SOURCE 12 ORGANISM_TAXID: 9606
KEYWDS SERINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.TULINSKY,I.I.MATHEWS
REVDAT 7 13-NOV-24 1HLT 1 REMARK
REVDAT 6 13-MAR-24 1HLT 1 SOURCE REMARK LINK
REVDAT 5 14-AUG-19 1HLT 1 REMARK
REVDAT 4 17-JUL-19 1HLT 1 REMARK LINK
REVDAT 3 13-JUL-11 1HLT 1 VERSN
REVDAT 2 24-FEB-09 1HLT 1 VERSN
REVDAT 1 20-DEC-94 1HLT 0
JRNL AUTH I.I.MATHEWS,K.P.PADMANABHAN,A.TULINKSY,J.E.SADLER
JRNL TITL STRUCTURE OF A NONADECAPEPTIDE OF THE FIFTH EGF DOMAIN OF
JRNL TITL 2 THROMBOMODULIN COMPLEXED WITH THROMBIN.
JRNL REF BIOCHEMISTRY V. 33 13547 1994
JRNL REFN ISSN 0006-2960
JRNL PMID 7947765
JRNL DOI 10.1021/BI00250A006
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH M.NAGASHIMA,E.LUNDH,J.C.LEONARD,J.F.PARKINSON
REMARK 1 TITL ALANINE-SCANNING MUTAGENESIS OF THE EPIDERMAL GROWTH
REMARK 1 TITL 2 FACTOR-LIKE DOMAINS OF HUMAN THROMBOMODULIN IDENTIFIES
REMARK 1 TITL 3 CRITICAL RESIDUES FOR ITS COFACTOR ACTIVITY
REMARK 1 REF J.BIOL.CHEM. V. 268 2888 1993
REMARK 1 REFN ISSN 0021-9258
REMARK 1 REFERENCE 2
REMARK 1 AUTH E.SKRZYPCZAK-JANKUN,V.E.CARPEROS,K.G.RAVICHANDRAN,
REMARK 1 AUTH 2 A.TULINSKY,M.WESTBROOK,J.M.MARAGANORE
REMARK 1 TITL STRUCTURE OF THE HIRUGEN AND HIRULOG 1 COMPLEXES OF
REMARK 1 TITL 2 ALPHA-THROMBIN
REMARK 1 REF J.MOL.BIOL. V. 221 1379 1991
REMARK 1 REFN ISSN 0022-2836
REMARK 2
REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PROLSQ
REMARK 3 AUTHORS : KONNERT,HENDRICKSON
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 11908
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : 0.146
REMARK 3 R VALUE (WORKING SET) : 0.146
REMARK 3 FREE R VALUE : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : NULL
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA.
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE (NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4575
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 60
REMARK 3 SOLVENT ATOMS : 121
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA
REMARK 3 BOND LENGTH (A) : NULL ; NULL
REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL
REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL
REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL
REMARK 3
REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL
REMARK 3
REMARK 3 NON-BONDED CONTACT RESTRAINTS.
REMARK 3 SINGLE TORSION (A) : NULL ; NULL
REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL
REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL
REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL
REMARK 3
REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS.
REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL
REMARK 3 PLANAR (DEGREES) : NULL ; NULL
REMARK 3 STAGGERED (DEGREES) : NULL ; NULL
REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 0.790 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.410 ; 2.000
REMARK 3 SIDE-CHAIN BOND (A**2) : 1.510 ; 2.500
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.510 ; 3.000
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1HLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000173903.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : NULL
REMARK 200 RADIATION SOURCE : NULL
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL
REMARK 200 WAVELENGTH OR RANGE (A) : NULL
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : NULL
REMARK 200 DETECTOR MANUFACTURER : NULL
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL
REMARK 200 RESOLUTION RANGE HIGH (A) : NULL
REMARK 200 RESOLUTION RANGE LOW (A) : NULL
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : NULL
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: NULL
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: X-PLOR
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 59.81
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y,X,Z+3/4
REMARK 290 4555 Y,-X,Z+1/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 162.90000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 244.35000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.45000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, J, K, R
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA H 149A
REMARK 465 ASN H 149B
REMARK 465 VAL H 149C
REMARK 465 GLY H 149D
REMARK 465 LYS H 149E
REMARK 465 PHE H 245
REMARK 465 GLY H 246
REMARK 465 GLU H 247
REMARK 465 ALA K 149A
REMARK 465 ASN K 149B
REMARK 465 VAL K 149C
REMARK 465 GLY K 149D
REMARK 465 LYS K 149E
REMARK 465 PHE K 245
REMARK 465 GLY K 246
REMARK 465 GLU K 247
REMARK 465 ASP R 425
REMARK 465 GLU R 426
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ILE L 14K CB CG1 CG2 CD1
REMARK 470 LYS H 87 CD CE NZ
REMARK 470 TRP H 148 CG CD1 CD2 NE1 CE2 CE3 CZ2
REMARK 470 TRP H 148 CZ3 CH2
REMARK 470 THR H 149 CB OG1 CG2
REMARK 470 ARG H 221A CD NE CZ NH1 NH2
REMARK 470 LYS H 240 CD CE NZ
REMARK 470 GLN H 244 CB CG CD OE1 NE2
REMARK 470 ILE J 14K CB CG1 CG2 CD1
REMARK 470 LYS K 87 CD CE NZ
REMARK 470 TRP K 148 CG CD1 CD2 NE1 CE2 CE3 CZ2
REMARK 470 TRP K 148 CZ3 CH2
REMARK 470 THR K 149 CB OG1 CG2
REMARK 470 ARG K 221A CD NE CZ NH1 NH2
REMARK 470 LYS K 240 CD CE NZ
REMARK 470 GLN K 244 CB CG CD OE1 NE2
REMARK 470 CYS R 409 SG
REMARK 470 GLU R 411 CB CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OG SER K 195 C3 0G6 K 1 2.00
REMARK 500 OG SER K 195 O2 0G6 K 1 2.04
REMARK 500 OG SER H 195 O2 0G6 H 1 2.09
REMARK 500 NH1 ARG K 73 O PRO K 152 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP L 1A CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES
REMARK 500 ARG L 4 CD - NE - CZ ANGL. DEV. = 15.8 DEGREES
REMARK 500 ARG L 4 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES
REMARK 500 GLU L 13 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 ARG L 14D CG - CD - NE ANGL. DEV. = 12.8 DEGREES
REMARK 500 ARG L 14D CD - NE - CZ ANGL. DEV. = 17.6 DEGREES
REMARK 500 ARG L 14D NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES
REMARK 500 ARG L 14D NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES
REMARK 500 ASP H 21 CB - CA - C ANGL. DEV. = 14.0 DEGREES
REMARK 500 LEU H 33 CB - CA - C ANGL. DEV. = 15.2 DEGREES
REMARK 500 LEU H 33 CA - CB - CG ANGL. DEV. = 14.5 DEGREES
REMARK 500 ARG H 35 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES
REMARK 500 LEU H 53 CA - CB - CG ANGL. DEV. = 15.6 DEGREES
REMARK 500 TYR H 60A CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES
REMARK 500 TYR H 60A CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES
REMARK 500 ASP H 63 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES
REMARK 500 ARG H 73 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 ARG H 73 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG H 75 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES
REMARK 500 TYR H 76 CB - CG - CD2 ANGL. DEV. = 4.1 DEGREES
REMARK 500 ARG H 93 CB - CA - C ANGL. DEV. = 13.0 DEGREES
REMARK 500 ARG H 93 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES
REMARK 500 ARG H 93 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES
REMARK 500 ARG H 101 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES
REMARK 500 ASP H 102 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES
REMARK 500 ALA H 113 N - CA - CB ANGL. DEV. = -8.5 DEGREES
REMARK 500 ASP H 125 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES
REMARK 500 ARG H 126 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 GLU H 127 CG - CD - OE1 ANGL. DEV. = 12.3 DEGREES
REMARK 500 ARG H 137 CA - CB - CG ANGL. DEV. = 13.3 DEGREES
REMARK 500 GLY H 140 N - CA - C ANGL. DEV. = 20.4 DEGREES
REMARK 500 ARG H 175 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES
REMARK 500 ARG H 175 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES
REMARK 500 PHE H 181 CB - CA - C ANGL. DEV. = 13.7 DEGREES
REMARK 500 CYS H 182 CB - CA - C ANGL. DEV. = 8.2 DEGREES
REMARK 500 ARG H 187 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES
REMARK 500 CYS H 191 CA - CB - SG ANGL. DEV. = 10.3 DEGREES
REMARK 500 MET H 201 CB - CA - C ANGL. DEV. = 13.4 DEGREES
REMARK 500 ARG H 206 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES
REMARK 500 VAL H 213 CA - C - O ANGL. DEV. = -12.8 DEGREES
REMARK 500 ARG H 221A CA - CB - CG ANGL. DEV. = 13.7 DEGREES
REMARK 500 TYR H 225 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES
REMARK 500 ARG H 233 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES
REMARK 500 ARG H 233 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES
REMARK 500 ASP H 243 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES
REMARK 500 ASP J 1A N - CA - CB ANGL. DEV. = 12.4 DEGREES
REMARK 500 GLU J 8 CA - CB - CG ANGL. DEV. = 15.5 DEGREES
REMARK 500 GLU J 14C CG - CD - OE1 ANGL. DEV. = -12.4 DEGREES
REMARK 500 ARG J 14D CD - NE - CZ ANGL. DEV. = 15.2 DEGREES
REMARK 500 ARG J 14D NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 109 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS L 1 147.31 -24.74
REMARK 500 PHE L 7 -82.55 -134.52
REMARK 500 LYS L 9 -77.14 -91.90
REMARK 500 LYS L 10 -22.07 -36.19
REMARK 500 SER L 11 60.03 63.43
REMARK 500 LYS L 14A -38.86 -26.81
REMARK 500 SER H 27 74.16 -153.33
REMARK 500 LEU H 41 -75.27 -106.70
REMARK 500 ARG H 50 -6.41 -157.44
REMARK 500 LEU H 59 -64.45 -91.78
REMARK 500 TYR H 60A 66.76 -158.57
REMARK 500 PRO H 60B -36.93 -33.06
REMARK 500 ASN H 60G 101.49 -173.41
REMARK 500 GLU H 61 3.80 -59.21
REMARK 500 HIS H 71 -49.20 -148.99
REMARK 500 GLU H 77 99.04 -43.92
REMARK 500 ILE H 79 -66.87 -104.30
REMARK 500 GLU H 97A -71.96 -104.29
REMARK 500 ASN H 98 30.21 -145.71
REMARK 500 ARG H 101 69.08 77.49
REMARK 500 ASN H 143 134.73 -32.23
REMARK 500 TRP H 148 -19.38 -150.20
REMARK 500 LEU H 155 152.95 -38.56
REMARK 500 ARG H 165 -60.54 -22.16
REMARK 500 VAL H 167 -52.80 -29.06
REMARK 500 PRO H 186 -14.62 -48.57
REMARK 500 ARG H 187 -165.99 -117.69
REMARK 500 ASP H 189 157.99 165.87
REMARK 500 PHE H 204A -64.30 -93.50
REMARK 500 VAL H 213 101.15 -48.89
REMARK 500 CYS J 1 135.27 -36.55
REMARK 500 PHE J 7 -89.29 -132.22
REMARK 500 LYS J 14A -5.87 -51.98
REMARK 500 THR J 14B -12.79 -146.95
REMARK 500 SER K 36A 117.07 -173.19
REMARK 500 CYS K 42 -163.85 -170.32
REMARK 500 ARG K 50 14.40 -149.07
REMARK 500 TYR K 60A 67.63 -158.49
REMARK 500 PRO K 60B -54.47 -28.56
REMARK 500 ASN K 60G 98.68 -167.22
REMARK 500 HIS K 71 -61.49 -147.77
REMARK 500 GLU K 77 78.91 -56.54
REMARK 500 GLU K 97A -71.53 -104.93
REMARK 500 LEU K 99 18.61 55.76
REMARK 500 ARG K 101 67.12 74.95
REMARK 500 ALA K 113 107.57 -53.74
REMARK 500 SER K 115 -169.55 -101.74
REMARK 500 ALA K 129A -79.84 -73.72
REMARK 500 TRP K 148 -12.03 -155.63
REMARK 500 LEU K 155 156.14 -49.14
REMARK 500
REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG H 67 0.09 SIDE CHAIN
REMARK 500 ARG H 73 0.13 SIDE CHAIN
REMARK 500 ARG H 75 0.26 SIDE CHAIN
REMARK 500 ARG H 77A 0.10 SIDE CHAIN
REMARK 500 ARG H 206 0.17 SIDE CHAIN
REMARK 500 ARG J 14D 0.22 SIDE CHAIN
REMARK 500 ARG K 50 0.13 SIDE CHAIN
REMARK 500 ARG K 73 0.23 SIDE CHAIN
REMARK 500 ARG K 75 0.30 SIDE CHAIN
REMARK 500 ARG K 206 0.10 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 THE INHIBITOR IS COVALENTLY CONNECTED TO ACTIVE SITE. THE UNBOUND
REMARK 600 FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON
REMARK 600 REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT
REMARK 600 BOND TO SER 195 FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO
REMARK 600 NE2 OF HIS 57
REMARK 630
REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR
REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]
REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 630
REMARK 630 M RES C SSSEQI
REMARK 630 0G6 H 1
REMARK 630 0G6 K 1
REMARK 630 SOURCE: NULL
REMARK 630 TAXONOMY: NULL
REMARK 630 SUBCOMP: DPN PRO AR7 0QE
REMARK 630 DETAILS: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0G6 H 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0G6 K 1
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 CHYMOTRYPSIN NUMBERING SYSTEM IS USED BASED ON THE TOPOLOGICAL
REMARK 999 ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989,
REMARK 999 EMBO J. 8, 3467-3475).
DBREF 1HLT L 1 14 UNP P00734 THRB_HUMAN 334 360
DBREF 1HLT H 16 247 UNP P00734 THRB_HUMAN 364 622
DBREF 1HLT J 1 14 UNP P00734 THRB_HUMAN 334 360
DBREF 1HLT K 16 247 UNP P00734 THRB_HUMAN 364 622
DBREF 1HLT R 408 426 UNP P07204 TRBM_HUMAN 426 444
SEQRES 1 L 27 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER
SEQRES 2 L 27 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR
SEQRES 3 L 27 ILE
SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO
SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU
SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU
SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS
SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS
SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE
SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN
SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS
SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO
SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU
SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN
SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN
SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU
SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR
SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY
SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO
SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN
SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP
SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS
SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU
SEQRES 1 J 27 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER
SEQRES 2 J 27 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR
SEQRES 3 J 27 ILE
SEQRES 1 K 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO
SEQRES 2 K 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU
SEQRES 3 K 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU
SEQRES 4 K 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS
SEQRES 5 K 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS
SEQRES 6 K 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE
SEQRES 7 K 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN
SEQRES 8 K 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS
SEQRES 9 K 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO
SEQRES 10 K 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU
SEQRES 11 K 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN
SEQRES 12 K 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN
SEQRES 13 K 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU
SEQRES 14 K 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR
SEQRES 15 K 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY
SEQRES 16 K 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO
SEQRES 17 K 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN
SEQRES 18 K 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP
SEQRES 19 K 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS
SEQRES 20 K 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU
SEQRES 1 R 19 GLU CYS PRO GLU GLY TYR ILE LEU ASP ASP GLY PHE ILE
SEQRES 2 R 19 CYS THR ASP ILE ASP GLU
HET 0G6 H 1 30
HET 0G6 K 1 30
HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)
HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-
HETNAM 3 0G6 PROLINAMIDE
HETSYN 0G6 PPACK
FORMUL 6 0G6 2(C21 H34 CL N6 O3 1+)
FORMUL 8 HOH *121(H2 O)
HELIX 1 H1H ALA H 55 LEU H 60 1 6
HELIX 2 H2H GLU H 164 SER H 171 1 8
HELIX 3 H3H ASP H 125 LEU H 129C 1 8
HELIX 4 H4H VAL H 231 GLN H 244 1 14
HELIX 5 H1K ALA K 55 LEU K 60 1 6
HELIX 6 H2K GLU K 164 SER K 171 1 8
HELIX 7 H3K ASP K 125 LEU K 129C 1 8
HELIX 8 H4K VAL K 231 GLN K 244 1 14
SHEET 1 B1H 7 PRO H 28 ARG H 35 0
SHEET 2 B1H 7 CYS H 42 ASP H 49 -1
SHEET 3 B1H 7 ARG H 50 ALA H 56 -1
SHEET 4 B1H 7 ARG H 101 LYS H 110 -1
SHEET 5 B1H 7 LYS H 81 PRO H 92 -1
SHEET 6 B1H 7 ASP H 63 GLY H 69 -1
SHEET 7 B1H 7 PRO H 28 ARG H 35 -1
SHEET 1 B2H 7 GLY H 133 TRP H 141 0
SHEET 2 B2H 7 LEU H 155 ILE H 162 -1
SHEET 3 B2H 7 ASN H 179 PRO H 186 -1
SHEET 4 B2H 7 GLY H 223 THR H 229 -1
SHEET 5 B2H 7 ILE H 212 GLU H 217 -1
SHEET 6 B2H 7 GLY H 193 MET H 201 -1
SHEET 7 B2H 7 GLY H 133 TRP H 141 -1
SHEET 1 B1K 7 PRO K 28 ARG K 35 0
SHEET 2 B1K 7 CYS K 42 ASP K 49 -1
SHEET 3 B1K 7 ARG K 50 ALA K 56 -1
SHEET 4 B1K 7 ARG K 101 LYS K 110 -1
SHEET 5 B1K 7 LYS K 81 PRO K 92 -1
SHEET 6 B1K 7 ASP K 63 GLY K 69 -1
SHEET 7 B1K 7 PRO K 28 ARG K 35 -1
SHEET 1 B2K 7 GLY K 133 TRP K 141 0
SHEET 2 B2K 7 LEU K 155 ILE K 162 -1
SHEET 3 B2K 7 ASN K 179 PRO K 186 -1
SHEET 4 B2K 7 GLY K 223 THR K 229 -1
SHEET 5 B2K 7 ILE K 212 GLU K 217 -1
SHEET 6 B2K 7 GLY K 193 MET K 201 -1
SHEET 7 B2K 7 GLY K 133 TRP K 141 -1
SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.01
SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.09
SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.01
SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.01
SSBOND 5 CYS J 1 CYS K 122 1555 1555 1.99
SSBOND 6 CYS K 42 CYS K 58 1555 1555 2.05
SSBOND 7 CYS K 168 CYS K 182 1555 1555 2.03
SSBOND 8 CYS K 191 CYS K 220 1555 1555 1.99
LINK C3 0G6 H 1 NE2 HIS H 57 1555 1555 1.59
LINK C2 0G6 H 1 OG SER H 195 1555 1555 1.72
LINK C3 0G6 K 1 NE2 HIS K 57 1555 1555 1.66
LINK C2 0G6 K 1 OG SER K 195 1555 1555 1.77
CISPEP 1 SER H 36A PRO H 37 0 -0.65
CISPEP 2 SER K 36A PRO K 37 0 -0.83
SITE 1 AC1 14 HIS H 57 TYR H 60A ASN H 98 LEU H 99
SITE 2 AC1 14 ILE H 174 ASP H 189 ALA H 190 CYS H 191
SITE 3 AC1 14 SER H 195 SER H 214 TRP H 215 GLY H 216
SITE 4 AC1 14 GLY H 219 HOH H 915
SITE 1 AC2 14 HIS K 57 TYR K 60A TRP K 60D LEU K 99
SITE 2 AC2 14 ILE K 174 ASP K 189 ALA K 190 CYS K 191
SITE 3 AC2 14 GLY K 193 SER K 195 SER K 214 TRP K 215
SITE 4 AC2 14 GLY K 216 GLY K 219
CRYST1 50.900 50.900 325.800 90.00 90.00 90.00 P 43 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019646 0.000000 0.000000 0.00000
SCALE2 0.000000 0.019646 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003069 0.00000
MTRIX1 1 -1.000000 0.000000 0.000700 -0.00779 1
MTRIX2 1 0.000000 1.000000 -0.001700 -0.04665 1
MTRIX3 1 -0.000700 -0.001700 -1.000000 -10.04110 1