HEADER ISOMERASE 08-DEC-00 1HNU TITLE CRYSTAL STRUCTURE OF PEROXISOMAL DELTA3-DELTA2-ENOYL-COA ISOMERASE TITLE 2 FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D3,D2-ENOYL COA ISOMERASE ECI1; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.3.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ALPHA/BETA, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.MURSULA,D.M.F.VAN AALTEN,J.K.HILTUNEN,R.K.WIERENGA REVDAT 7 07-FEB-24 1HNU 1 REMARK REVDAT 6 27-OCT-21 1HNU 1 REMARK SEQADV REVDAT 5 13-JUL-11 1HNU 1 VERSN REVDAT 4 24-FEB-09 1HNU 1 VERSN REVDAT 3 01-APR-03 1HNU 1 JRNL REVDAT 2 05-SEP-01 1HNU 3 ATOM SEQRES SEQADV REVDAT 1 20-JUN-01 1HNU 0 JRNL AUTH A.M.MURSULA,D.M.VAN AALTEN,J.K.HILTUNEN,R.K.WIERENGA JRNL TITL THE CRYSTAL STRUCTURE OF DELTA(3)-DELTA(2)-ENOYL-COA JRNL TITL 2 ISOMERASE. JRNL REF J.MOL.BIOL. V. 309 845 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11399063 JRNL DOI 10.1006/JMBI.2001.4671 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.M.MURSULA,D.M.VAN AALTEN,Y.MODIS,J.K.HILTUNEN,R.K.WIERENGA REMARK 1 TITL CRYSTALLIZATION AND X-RAY DIFFRACTION ANALYSIS OF REMARK 1 TITL 2 PEROXISOMAL DELTA3-DELTA2-ENOYL-COA ISOMERASE FROM REMARK 1 TITL 3 SACCHAROMYCES CEREVISIAE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1020 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900006533 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 26907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1347 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.182 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1765, 1.1773, 1.1697, 1.1836 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULFATE, 1,4-DIOXANE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.63800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.63800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.63800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.63800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.63800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.63800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 116.13900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 58.06950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 100.57932 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 58.06950 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 100.57932 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 61.63800 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 116.13900 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 61.63800 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 61.63800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 116.13900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 58.06950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 100.57932 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 793 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 795 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 74 REMARK 465 ILE A 75 REMARK 465 ALA A 76 REMARK 465 LYS A 77 REMARK 465 ALA A 78 REMARK 465 GLN A 79 REMARK 465 GLY A 80 REMARK 465 ASP A 81 REMARK 465 ASP A 82 REMARK 465 THR A 83 REMARK 465 ASN A 84 REMARK 465 LYS A 85 REMARK 465 TYR A 86 REMARK 465 PRO A 87 REMARK 465 SER A 88 REMARK 465 LEU A 271 REMARK 465 GLY A 272 REMARK 465 SER A 273 REMARK 465 LYS A 274 REMARK 465 GLN A 275 REMARK 465 ARG A 276 REMARK 465 LYS A 277 REMARK 465 HIS A 278 REMARK 465 ARG A 279 REMARK 465 LEU A 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O12 REO A 502 O HOH A 762 1.97 REMARK 500 N GLY A 193 O HOH A 633 2.08 REMARK 500 CA GLY A 193 O HOH A 633 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 254 O HOH A 777 3665 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 GLU A 36 CA - CB - CG ANGL. DEV. = 19.3 DEGREES REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP A 93 C - N - CA ANGL. DEV. = 23.1 DEGREES REMARK 500 LEU A 119 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 TYR A 186 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 187 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU A 254 OE1 - CD - OE2 ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 40.22 39.13 REMARK 500 SER A 61 -146.00 -128.65 REMARK 500 SER A 67 132.24 178.26 REMARK 500 LYS A 92 21.50 -59.07 REMARK 500 PRO A 149 47.48 -92.72 REMARK 500 ILE A 156 -169.93 -125.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 61 -11.78 REMARK 500 SER A 91 -14.62 REMARK 500 LYS A 92 -10.07 REMARK 500 SER A 127 -10.42 REMARK 500 LEU A 167 10.07 REMARK 500 ASN A 205 -11.32 REMARK 500 VAL A 252 -10.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE REO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE REO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HNO RELATED DB: PDB REMARK 900 1HNO IS THE UNLIGANDED STRUCTURE DBREF 1HNU A 1 280 UNP Q05871 ECI1_YEAST 1 280 SEQADV 1HNU A 25 UNP Q05871 25 ENGINEERED MUTATION SEQRES 1 A 280 MET SER GLN GLU ILE ARG GLN ASN GLU LYS ILE SER TYR SEQRES 2 A 280 ARG ILE GLU GLY PRO PHE PHE ILE ILE HIS LEU ILE ASN SEQRES 3 A 280 PRO ASP ASN LEU ASN ALA LEU GLU GLY GLU ASP TYR ILE SEQRES 4 A 280 TYR LEU GLY GLU LEU LEU GLU LEU ALA ASP ARG ASN ARG SEQRES 5 A 280 ASP VAL TYR PHE THR ILE ILE GLN SER SER GLY ARG PHE SEQRES 6 A 280 PHE SER SER GLY ALA ASP PHE LYS GLY ILE ALA LYS ALA SEQRES 7 A 280 GLN GLY ASP ASP THR ASN LYS TYR PRO SER GLU THR SER SEQRES 8 A 280 LYS TRP VAL SER ASN PHE VAL ALA ARG ASN VAL TYR VAL SEQRES 9 A 280 THR ASP ALA PHE ILE LYS HIS SER LYS VAL LEU ILE CYS SEQRES 10 A 280 CYS LEU ASN GLY PRO ALA ILE GLY LEU SER ALA ALA LEU SEQRES 11 A 280 VAL ALA LEU CYS ASP ILE VAL TYR SER ILE ASN ASP LYS SEQRES 12 A 280 VAL TYR LEU LEU TYR PRO PHE ALA ASN LEU GLY LEU ILE SEQRES 13 A 280 THR GLU GLY GLY THR THR VAL SER LEU PRO LEU LYS PHE SEQRES 14 A 280 GLY THR ASN THR THR TYR GLU CYS LEU MET PHE ASN LYS SEQRES 15 A 280 PRO PHE LYS TYR ASP ILE MET CYS GLU ASN GLY PHE ILE SEQRES 16 A 280 SER LYS ASN PHE ASN MET PRO SER SER ASN ALA GLU ALA SEQRES 17 A 280 PHE ASN ALA LYS VAL LEU GLU GLU LEU ARG GLU LYS VAL SEQRES 18 A 280 LYS GLY LEU TYR LEU PRO SER CYS LEU GLY MET LYS LYS SEQRES 19 A 280 LEU LEU LYS SER ASN HIS ILE ASP ALA PHE ASN LYS ALA SEQRES 20 A 280 ASN SER VAL GLU VAL ASN GLU SER LEU LYS TYR TRP VAL SEQRES 21 A 280 ASP GLY GLU PRO LEU LYS ARG PHE ARG GLN LEU GLY SER SEQRES 22 A 280 LYS GLN ARG LYS HIS ARG LEU HET REO A 501 5 HET REO A 502 5 HET EDO A 601 4 HET EDO A 602 4 HETNAM REO PERRHENATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 REO 2(O4 RE 1-) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *194(H2 O) HELIX 1 1 ASN A 26 LEU A 30 5 5 HELIX 2 2 GLU A 34 ASN A 51 1 18 HELIX 3 3 GLU A 89 LYS A 92 5 4 HELIX 4 4 TRP A 93 HIS A 111 1 19 HELIX 5 5 GLY A 125 LEU A 133 1 9 HELIX 6 6 PRO A 149 LEU A 153 5 5 HELIX 7 7 GLY A 160 GLY A 170 1 11 HELIX 8 8 GLY A 170 PHE A 180 1 11 HELIX 9 9 TYR A 186 ASN A 192 1 7 HELIX 10 10 ASN A 205 LYS A 222 1 18 HELIX 11 11 TYR A 225 ASN A 239 1 15 HELIX 12 12 HIS A 240 GLY A 262 1 23 HELIX 13 13 GLY A 262 ARG A 269 1 8 SHEET 1 A 6 ILE A 11 GLU A 16 0 SHEET 2 A 6 PHE A 19 LEU A 24 -1 O PHE A 19 N GLU A 16 SHEET 3 A 6 PHE A 56 GLN A 60 1 O PHE A 56 N PHE A 20 SHEET 4 A 6 VAL A 114 LEU A 119 1 O VAL A 114 N THR A 57 SHEET 5 A 6 ILE A 136 SER A 139 1 O ILE A 136 N CYS A 117 SHEET 6 A 6 LYS A 197 ASN A 198 1 O LYS A 197 N SER A 139 SHEET 1 B 3 ALA A 123 ILE A 124 0 SHEET 2 B 3 TYR A 145 LEU A 147 1 O TYR A 145 N ALA A 123 SHEET 3 B 3 PHE A 184 LYS A 185 -1 N PHE A 184 O LEU A 146 SITE 1 AC1 5 TYR A 175 LEU A 236 LYS A 237 ASN A 239 SITE 2 AC1 5 HIS A 240 SITE 1 AC2 7 GLY A 125 LEU A 126 PHE A 150 LEU A 153 SITE 2 AC2 7 GLU A 158 HOH A 731 HOH A 762 SITE 1 AC3 7 LEU A 133 CYS A 134 LYS A 168 PHE A 244 SITE 2 AC3 7 HOH A 628 HOH A 629 HOH A 796 SITE 1 AC4 4 ARG A 64 LYS A 143 PRO A 202 SER A 203 CRYST1 116.139 116.139 123.276 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008610 0.004970 0.000000 0.00000 SCALE2 0.000000 0.009940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008110 0.00000