HEADER TRANSPORT PROTEIN 14-DEC-00 1HQB TITLE TERTIARY STRUCTURE OF APO-D-ALANYL CARRIER PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APO-D-ALANYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-81; COMPND 5 SYNONYM: APO-DCP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; SOURCE 3 ORGANISM_TAXID: 1582; SOURCE 4 GENE: DLTC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDCP1 KEYWDS 3-HELIX BUNDLE, TRANSPORT PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR B.F.VOLKMAN,Q.ZHANG,D.V.DEBABOV,E.RIVERA,G.KRESHECK,F.C.NEUHAUS REVDAT 4 23-FEB-22 1HQB 1 REMARK REVDAT 3 24-FEB-09 1HQB 1 VERSN REVDAT 2 01-APR-03 1HQB 1 JRNL REVDAT 1 01-AUG-01 1HQB 0 JRNL AUTH B.F.VOLKMAN,Q.ZHANG,D.V.DEBABOV,E.RIVERA,G.C.KRESHECK, JRNL AUTH 2 F.C.NEUHAUS JRNL TITL BIOSYNTHESIS OF D-ALANYL-LIPOTEICHOIC ACID: THE TERTIARY JRNL TITL 2 STRUCTURE OF APO-D-ALANYL CARRIER PROTEIN. JRNL REF BIOCHEMISTRY V. 40 7964 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11434765 JRNL DOI 10.1021/BI010355A REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.V.DEBABOV,M.P.HEATON,Q.ZHANG,K.D.STEWART,R.H.LAMBALOT, REMARK 1 AUTH 2 F.C.NEUHAUS REMARK 1 TITL THE D-ALANYL CARRIER PROTEIN IN LACTOBACILLUS CASEI: REMARK 1 TITL 2 CLONING, SEQUENCING AND EXPRESSION OF DLTC REMARK 1 REF J.BACTERIOL. V. 178 3869 1996 REMARK 1 REFN ISSN 0021-9193 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : PETER GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1582 NON-TRIVIAL UPPER-LIMIT DISTANCE CONSTRAINTS (332 LONG- REMARK 3 RANGE, 560 MEDIUM-RANGE, 372 SEQUENTIAL AND 318 INTRARESIDUE), REMARK 3 DERIVED FROM 3288 ASSIGNED NOES FROM 4 2D AND 3D SPECTRA. THIS REMARK 3 CORRESPONDS TO AN AVERAGE OF 19.8 CONSTRAINTS/RESIDUE. NO REMARK 3 ADDITIONAL CONSTRAINTS WERE INCLUDED. STRUCTURES WERE GENERATED REMARK 3 USING THE ANNEAL FUNCTION OF THE PROGRAM DYANA 1.5, WITH 8000 REMARK 3 TORSION ANGLE DYNAMICS STEPS FOR EACH STRUCTURE. THE AVERAGE REMARK 3 DYANA TARGET FUNCTION FOR THE 30 CONFORMERS WAS 0.68 +/- 0.11. REMARK 3 THE AVERAGE BACKBONE ATOMIC RMSD TO THE MEAN STRUCTURE FOR REMARK 3 RESIDUES 4-81 IS 0.43 +/- 0.08 ANGSTROMS, AND 0.86 +/- 0.09 FOR REMARK 3 ALL NON-HYDROGEN ATOMS (RESIDUES 4-81). REMARK 4 REMARK 4 1HQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012513. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.00 REMARK 210 PH : 5.80 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-15N]APO-DCP, 50 MM REMARK 210 PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D 15N- REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 95, NMRPIPE, XWINNMR 2.3, REMARK 210 XEASY 1.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: COMPLETE RESONANCE ASSIGNMENTS OBTAINED WITH TRIPLE REMARK 210 -RESONANCE NMR DATA AS DESCRIBED IN THE PRIMARY CITATION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 31 O ASP A 68 1.47 REMARK 500 O LEU A 49 H VAL A 55 1.50 REMARK 500 O ASP A 63 H GLU A 66 1.50 REMARK 500 O ASN A 8 H ASP A 12 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 37.25 -91.95 REMARK 500 LYS A 25 -75.24 -111.63 REMARK 500 ASP A 28 33.97 -155.49 REMARK 500 ASP A 38 -60.98 -130.00 REMARK 500 SER A 39 -53.16 -179.42 REMARK 500 SER A 51 -58.79 -124.04 REMARK 500 VAL A 59 -45.55 -136.70 REMARK 500 SER A 60 -35.05 -36.10 REMARK 500 GLU A 61 66.90 178.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ACP RELATED DB: PDB REMARK 900 FAS ACYL CARRIER PROTEIN FROM E. COLI. DBREF 1HQB A 2 81 UNP P55153 DLTC_LACRH 2 81 SEQRES 1 A 80 ALA ASP GLU ALA ILE LYS ASN GLY VAL LEU ASP ILE LEU SEQRES 2 A 80 ALA ASP LEU THR GLY SER ASP ASP VAL LYS LYS ASN LEU SEQRES 3 A 80 ASP LEU ASN LEU PHE GLU THR GLY LEU LEU ASP SER MET SEQRES 4 A 80 GLY THR VAL GLN LEU LEU LEU GLU LEU GLN SER GLN PHE SEQRES 5 A 80 GLY VAL ASP ALA PRO VAL SER GLU PHE ASP ARG LYS GLU SEQRES 6 A 80 TRP ASP THR PRO ASN LYS ILE ILE ALA LYS VAL GLU GLN SEQRES 7 A 80 ALA GLN HELIX 1 1 ASP A 3 GLY A 19 1 17 HELIX 2 2 SER A 39 GLN A 50 1 12 HELIX 3 3 THR A 69 GLN A 79 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000