HEADER HYDROLASE 16-DEC-00 1HQG TITLE CRYSTAL STRUCTURE OF THE H141C ARGINASE VARIANT COMPLEXED WITH TITLE 2 PRODUCTS ORNITHINE AND UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINUCLEAR MANGANESE CLUSTER, PRODUCT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.COX,E.CAMA,D.M.COLLELUORI,D.E.ASH,D.W.CHRISTIANSON REVDAT 4 13-JUL-11 1HQG 1 VERSN REVDAT 3 24-FEB-09 1HQG 1 VERSN REVDAT 2 01-APR-03 1HQG 1 JRNL REVDAT 1 04-APR-01 1HQG 0 JRNL AUTH J.D.COX,E.CAMA,D.M.COLLELUORI,S.PETHE,J.L.BOUCHER,D.MANSUY, JRNL AUTH 2 D.E.ASH,D.W.CHRISTIANSON JRNL TITL MECHANISTIC AND METABOLIC INFERENCES FROM THE BINDING OF JRNL TITL 2 SUBSTRATE ANALOGUES AND PRODUCTS TO ARGINASE. JRNL REF BIOCHEMISTRY V. 40 2689 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11258880 JRNL DOI 10.1021/BI002318+ REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HQG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, BICINE, MANGANESE CHLORIDE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 -118.40 62.70 REMARK 500 ARG A 180 7.99 -163.76 REMARK 500 ASP A 181 76.07 -150.74 REMARK 500 GLN B 65 -118.43 62.71 REMARK 500 ARG B 180 8.04 -163.78 REMARK 500 ASP B 181 76.05 -150.74 REMARK 500 GLN C 65 -118.39 62.64 REMARK 500 ARG C 180 8.00 -163.73 REMARK 500 ASP C 181 76.06 -150.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD2 REMARK 620 2 ASP A 128 OD2 162.8 REMARK 620 3 URE A1901 O 72.4 106.7 REMARK 620 4 HOH A 604 O 78.6 84.3 81.5 REMARK 620 5 ASP A 124 OD2 84.0 91.8 152.9 80.8 REMARK 620 6 HIS A 101 ND1 103.4 93.6 100.7 177.3 97.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 232 OD2 170.6 REMARK 620 3 ASP A 234 OD1 99.8 89.5 REMARK 620 4 ASP A 234 OD2 98.8 85.8 56.2 REMARK 620 5 ASP A 124 OD1 90.2 92.1 80.2 136.3 REMARK 620 6 HOH A 604 O 85.9 85.2 163.5 138.6 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 URE B1902 O REMARK 620 2 HIS B 101 ND1 100.7 REMARK 620 3 ASP B 124 OD2 152.9 97.6 REMARK 620 4 ASP B 232 OD2 72.4 103.4 84.0 REMARK 620 5 HOH B 660 O 81.5 177.3 80.8 78.6 REMARK 620 6 ASP B 128 OD2 106.7 93.6 91.8 162.9 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 126 ND1 90.2 REMARK 620 3 ASP B 232 OD2 92.2 170.6 REMARK 620 4 ASP B 234 OD1 80.2 99.8 89.5 REMARK 620 5 HOH B 660 O 84.3 85.9 85.3 163.5 REMARK 620 6 ASP B 234 OD2 136.3 98.8 85.8 56.2 138.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 232 OD2 REMARK 620 2 URE C1903 O 72.4 REMARK 620 3 HOH C 714 O 78.6 81.5 REMARK 620 4 ASP C 128 OD2 162.9 106.7 84.4 REMARK 620 5 ASP C 124 OD2 84.0 152.9 80.8 91.8 REMARK 620 6 HIS C 101 ND1 103.4 100.7 177.4 93.6 97.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 234 OD1 REMARK 620 2 ASP C 234 OD2 56.2 REMARK 620 3 ASP C 124 OD1 80.2 136.3 REMARK 620 4 HOH C 714 O 163.5 138.6 84.3 REMARK 620 5 ASP C 232 OD2 89.5 85.8 92.1 85.2 REMARK 620 6 HIS C 126 ND1 99.8 98.8 90.2 86.0 170.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 1901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE B 1902 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE C 1903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLA RELATED DB: PDB REMARK 900 NATIVE ARGINASE DBREF 1HQG A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQG B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQG C 1 323 UNP P07824 ARGI1_RAT 1 323 SEQADV 1HQG CME A 141 UNP P07824 HIS 141 SEE REMARK 999 SEQADV 1HQG CME B 141 UNP P07824 HIS 141 SEE REMARK 999 SEQADV 1HQG CME C 141 UNP P07824 HIS 141 SEE REMARK 999 SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR THR SER SER GLY ASN LEU CME GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR THR SER SER GLY ASN LEU CME GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR THR SER SER GLY ASN LEU CME GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS MODRES 1HQG CME A 141 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 1HQG CME B 141 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 1HQG CME C 141 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 141 10 HET CME B 141 10 HET CME C 141 10 HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1 HET ORN A 801 9 HET ORN B 902 9 HET ORN C 903 9 HET URE A1901 4 HET URE B1902 4 HET URE C1903 4 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM MN MANGANESE (II) ION HETNAM ORN L-ORNITHINE HETNAM URE UREA FORMUL 1 CME 3(C5 H11 N O3 S2) FORMUL 4 MN 6(MN 2+) FORMUL 10 ORN 3(C5 H12 N2 O2) FORMUL 13 URE 3(C H4 N2 O) FORMUL 16 HOH *167(H2 O) HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 LYS A 41 1 7 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 GLN A 143 LEU A 149 1 7 HELIX 8 8 LYS A 150 LYS A 153 5 4 HELIX 9 9 SER A 170 LYS A 172 5 3 HELIX 10 10 ASP A 183 LEU A 193 1 11 HELIX 11 11 SER A 199 GLY A 207 1 9 HELIX 12 12 GLY A 207 GLY A 221 1 15 HELIX 13 13 SER A 253 GLY A 268 1 16 HELIX 14 14 ASN A 279 GLY A 283 5 5 HELIX 15 15 THR A 285 PHE A 304 1 20 HELIX 16 16 GLY B 23 GLU B 25 5 3 HELIX 17 17 LYS B 26 ALA B 34 1 9 HELIX 18 18 GLY B 35 LYS B 41 1 7 HELIX 19 19 ASN B 69 ASN B 90 1 22 HELIX 20 20 ASP B 100 SER B 102 5 3 HELIX 21 21 MET B 103 HIS B 115 1 13 HELIX 22 22 GLN B 143 LEU B 149 1 7 HELIX 23 23 LYS B 150 LYS B 153 5 4 HELIX 24 24 SER B 170 LYS B 172 5 3 HELIX 25 25 ASP B 183 LEU B 193 1 11 HELIX 26 26 SER B 199 GLY B 207 1 9 HELIX 27 27 GLY B 207 GLY B 221 1 15 HELIX 28 28 SER B 253 GLY B 268 1 16 HELIX 29 29 ASN B 279 GLY B 283 5 5 HELIX 30 30 THR B 285 PHE B 304 1 20 HELIX 31 31 GLY C 23 GLU C 25 5 3 HELIX 32 32 LYS C 26 ALA C 34 1 9 HELIX 33 33 GLY C 35 LYS C 41 1 7 HELIX 34 34 ASN C 69 ASN C 90 1 22 HELIX 35 35 ASP C 100 SER C 102 5 3 HELIX 36 36 MET C 103 HIS C 115 1 13 HELIX 37 37 GLN C 143 LEU C 149 1 7 HELIX 38 38 LYS C 150 LYS C 153 5 4 HELIX 39 39 SER C 170 LYS C 172 5 3 HELIX 40 40 ASP C 183 LEU C 193 1 11 HELIX 41 41 SER C 199 GLY C 207 1 9 HELIX 42 42 GLY C 207 GLY C 221 1 15 HELIX 43 43 SER C 253 GLY C 268 1 16 HELIX 44 44 ASN C 279 GLY C 283 5 5 HELIX 45 45 THR C 285 PHE C 304 1 20 SHEET 1 A 8 VAL A 47 ASP A 52 0 SHEET 2 A 8 ILE A 8 ALA A 13 1 O ILE A 8 N ARG A 48 SHEET 3 A 8 ILE A 93 GLY A 98 1 O ILE A 93 N GLU A 9 SHEET 4 A 8 LEU A 270 MET A 276 1 O SER A 271 N SER A 94 SHEET 5 A 8 ILE A 227 ASP A 232 1 O ILE A 227 N SER A 271 SHEET 6 A 8 CYS A 119 VAL A 123 1 O CYS A 119 N HIS A 228 SHEET 7 A 8 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 PHE A 198 1 O LYS A 196 N TYR A 176 SHEET 1 B 8 VAL B 47 ASP B 52 0 SHEET 2 B 8 ILE B 8 ALA B 13 1 O ILE B 8 N ARG B 48 SHEET 3 B 8 ILE B 93 GLY B 98 1 O ILE B 93 N GLU B 9 SHEET 4 B 8 LEU B 270 MET B 276 1 O SER B 271 N SER B 94 SHEET 5 B 8 ILE B 227 ASP B 232 1 O ILE B 227 N SER B 271 SHEET 6 B 8 CYS B 119 VAL B 123 1 O CYS B 119 N HIS B 228 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O LYS B 196 N TYR B 176 SHEET 1 C 8 VAL C 47 ASP C 52 0 SHEET 2 C 8 ILE C 8 ALA C 13 1 O ILE C 8 N ARG C 48 SHEET 3 C 8 ILE C 93 GLY C 98 1 O ILE C 93 N GLU C 9 SHEET 4 C 8 LEU C 270 MET C 276 1 O SER C 271 N SER C 94 SHEET 5 C 8 ILE C 227 ASP C 232 1 O ILE C 227 N SER C 271 SHEET 6 C 8 CYS C 119 VAL C 123 1 O CYS C 119 N HIS C 228 SHEET 7 C 8 ILE C 174 ILE C 177 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 PHE C 198 1 O LYS C 196 N TYR C 176 LINK C LEU A 140 N CME A 141 1555 1555 1.33 LINK C CME A 141 N GLY A 142 1555 1555 1.33 LINK MN MN A 500 OD2 ASP A 232 1555 1555 2.34 LINK MN MN A 500 OD2 ASP A 128 1555 1555 2.10 LINK MN MN A 500 O URE A1901 1555 1555 1.82 LINK MN MN A 500 O HOH A 604 1555 1555 2.30 LINK MN MN A 500 OD2 ASP A 124 1555 1555 2.09 LINK MN MN A 500 ND1 HIS A 101 1555 1555 2.25 LINK MN MN A 501 ND1 HIS A 126 1555 1555 2.25 LINK MN MN A 501 OD2 ASP A 232 1555 1555 2.35 LINK MN MN A 501 OD1 ASP A 234 1555 1555 2.46 LINK MN MN A 501 OD2 ASP A 234 1555 1555 2.19 LINK MN MN A 501 OD1 ASP A 124 1555 1555 2.15 LINK MN MN A 501 O HOH A 604 1555 1555 1.97 LINK C LEU B 140 N CME B 141 1555 1555 1.33 LINK C CME B 141 N GLY B 142 1555 1555 1.33 LINK MN MN B 502 O URE B1902 1555 1555 1.82 LINK MN MN B 502 ND1 HIS B 101 1555 1555 2.25 LINK MN MN B 502 OD2 ASP B 124 1555 1555 2.09 LINK MN MN B 502 OD2 ASP B 232 1555 1555 2.34 LINK MN MN B 502 O HOH B 660 1555 1555 2.30 LINK MN MN B 502 OD2 ASP B 128 1555 1555 2.10 LINK MN MN B 503 OD1 ASP B 124 1555 1555 2.15 LINK MN MN B 503 ND1 HIS B 126 1555 1555 2.25 LINK MN MN B 503 OD2 ASP B 232 1555 1555 2.35 LINK MN MN B 503 OD1 ASP B 234 1555 1555 2.46 LINK MN MN B 503 O HOH B 660 1555 1555 1.97 LINK MN MN B 503 OD2 ASP B 234 1555 1555 2.19 LINK C LEU C 140 N CME C 141 1555 1555 1.33 LINK C CME C 141 N GLY C 142 1555 1555 1.33 LINK MN MN C 504 OD2 ASP C 232 1555 1555 2.34 LINK MN MN C 504 O URE C1903 1555 1555 1.82 LINK MN MN C 504 O HOH C 714 1555 1555 2.30 LINK MN MN C 504 OD2 ASP C 128 1555 1555 2.10 LINK MN MN C 504 OD2 ASP C 124 1555 1555 2.09 LINK MN MN C 504 ND1 HIS C 101 1555 1555 2.25 LINK MN MN C 505 OD1 ASP C 234 1555 1555 2.46 LINK MN MN C 505 OD2 ASP C 234 1555 1555 2.19 LINK MN MN C 505 OD1 ASP C 124 1555 1555 2.15 LINK MN MN C 505 O HOH C 714 1555 1555 1.97 LINK MN MN C 505 OD2 ASP C 232 1555 1555 2.35 LINK MN MN C 505 ND1 HIS C 126 1555 1555 2.25 CISPEP 1 GLY A 98 GLY A 99 0 -0.11 CISPEP 2 GLY B 98 GLY B 99 0 -0.13 CISPEP 3 GLY C 98 GLY C 99 0 -0.10 SITE 1 AC1 7 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC1 7 MN A 501 HOH A 604 URE A1901 SITE 1 AC2 7 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 7 MN A 500 HOH A 604 URE A1901 SITE 1 AC3 7 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC3 7 MN B 503 HOH B 660 URE B1902 SITE 1 AC4 7 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 7 MN B 502 HOH B 660 URE B1902 SITE 1 AC5 7 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC5 7 MN C 505 HOH C 714 URE C1903 SITE 1 AC6 7 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC6 7 MN C 504 HOH C 714 URE C1903 SITE 1 AC7 11 HIS A 126 ASP A 128 ASN A 130 SER A 137 SITE 2 AC7 11 CME A 141 ASP A 183 GLU A 186 HOH A 604 SITE 3 AC7 11 HOH A 641 HOH A 642 URE A1901 SITE 1 AC8 11 HIS B 126 ASP B 128 ASN B 130 SER B 137 SITE 2 AC8 11 CME B 141 ASP B 183 GLU B 186 HOH B 660 SITE 3 AC8 11 HOH B 696 HOH B 697 URE B1902 SITE 1 AC9 11 HIS C 126 ASP C 128 ASN C 130 SER C 137 SITE 2 AC9 11 CME C 141 ASP C 183 GLU C 186 HOH C 714 SITE 3 AC9 11 HOH C 752 HOH C 753 URE C1903 SITE 1 BC1 11 HIS A 101 ASP A 128 CME A 141 ASP A 232 SITE 2 BC1 11 ASP A 234 GLU A 277 MN A 500 MN A 501 SITE 3 BC1 11 HOH A 604 HOH A 644 ORN A 801 SITE 1 BC2 11 HIS B 101 ASP B 128 CME B 141 ASP B 232 SITE 2 BC2 11 ASP B 234 GLU B 277 MN B 502 MN B 503 SITE 3 BC2 11 HOH B 660 HOH B 699 ORN B 902 SITE 1 BC3 11 HIS C 101 ASP C 128 CME C 141 ASP C 232 SITE 2 BC3 11 ASP C 234 GLU C 277 MN C 504 MN C 505 SITE 3 BC3 11 HOH C 714 HOH C 755 ORN C 903 CRYST1 88.200 88.200 106.500 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011338 0.006546 0.000000 0.00000 SCALE2 0.000000 0.013092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000