HEADER TRANSFERASE 18-DEC-00 1HQK TITLE CRYSTAL STRUCTURE ANALYSIS OF LUMAZINE SYNTHASE FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: LUMAZINE SYNTHASE; COMPND 5 EC: 2.5.1.78; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LUMAZINE SYNTHASE, AQUIFEX AEOLICUS, X-RAY STRUCTURE ANALYSIS, ENZYME KEYWDS 2 STABILITY, VITAMIN BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,W.MEINING,M.FISCHER,A.BACHER,R.LADENSTEIN REVDAT 7 07-FEB-24 1HQK 1 REMARK REVDAT 6 11-OCT-17 1HQK 1 REMARK REVDAT 5 04-OCT-17 1HQK 1 REMARK REVDAT 4 16-JAN-13 1HQK 1 COMPND REVDAT 3 13-JUL-11 1HQK 1 VERSN REVDAT 2 24-FEB-09 1HQK 1 VERSN REVDAT 1 18-DEC-01 1HQK 0 JRNL AUTH X.ZHANG,W.MEINING,M.FISCHER,A.BACHER,R.LADENSTEIN JRNL TITL X-RAY STRUCTURE ANALYSIS AND CRYSTALLOGRAPHIC REFINEMENT OF JRNL TITL 2 LUMAZINE SYNTHASE FROM THE HYPERTHERMOPHILE AQUIFEX AEOLICUS JRNL TITL 3 AT 1.6 A RESOLUTION: DETERMINANTS OF THERMOSTABILITY JRNL TITL 4 REVEALED FROM STRUCTURAL COMPARISONS. JRNL REF J.MOL.BIOL. V. 306 1099 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11237620 JRNL DOI 10.1006/JMBI.2000.4435 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 125145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6302 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.909 REMARK 200 MONOCHROMATOR : BENT SINGLE-CRYSTAL GERMANIUM REMARK 200 TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, AUTOMAR REMARK 200 DATA SCALING SOFTWARE : MARSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.440 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.03600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, LITHIUM SULFATE, SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.41000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.41000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 90.41000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.41000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 90.41000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 90.41000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 90.41000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.41000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 90.41000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 90.41000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 90.41000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 90.41000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 90.41000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 90.41000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 90.41000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 90.41000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 90.41000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 90.41000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 90.41000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 90.41000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 90.41000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 90.41000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 90.41000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 90.41000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 90.41000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 90.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 250270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 250350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1410.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 361.64000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 361.64000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 361.64000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 361.64000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 -180.82000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 180.82000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 180.82000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 180.82000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 361.64000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 180.82000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 180.82000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 361.64000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 -180.82000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 180.82000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 180.82000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 -180.82000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 180.82000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 -180.82000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 361.64000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 180.82000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 180.82000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 361.64000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 180.82000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 180.82000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 341 LIES ON A SPECIAL POSITION. REMARK 375 HOH D3341 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU A 45 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 21 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 40 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG C 40 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 44 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG D 40 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG D 40 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG D 44 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG D 52 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG E 40 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG E 40 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG E 44 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG E 44 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG E 68 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 130 -129.61 -126.63 REMARK 500 THR B 130 -126.04 -126.79 REMARK 500 THR C 130 -129.25 -126.73 REMARK 500 THR D 130 -125.65 -124.64 REMARK 500 THR E 130 -128.63 -122.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 1HQK A 1 154 UNP O66529 RISB_AQUAE 1 154 DBREF 1HQK B 1 154 UNP O66529 RISB_AQUAE 1 154 DBREF 1HQK C 1 154 UNP O66529 RISB_AQUAE 1 154 DBREF 1HQK D 1 154 UNP O66529 RISB_AQUAE 1 154 DBREF 1HQK E 1 154 UNP O66529 RISB_AQUAE 1 154 SEQRES 1 A 154 MET GLN ILE TYR GLU GLY LYS LEU THR ALA GLU GLY LEU SEQRES 2 A 154 ARG PHE GLY ILE VAL ALA SER ARG PHE ASN HIS ALA LEU SEQRES 3 A 154 VAL ASP ARG LEU VAL GLU GLY ALA ILE ASP CYS ILE VAL SEQRES 4 A 154 ARG HIS GLY GLY ARG GLU GLU ASP ILE THR LEU VAL ARG SEQRES 5 A 154 VAL PRO GLY SER TRP GLU ILE PRO VAL ALA ALA GLY GLU SEQRES 6 A 154 LEU ALA ARG LYS GLU ASP ILE ASP ALA VAL ILE ALA ILE SEQRES 7 A 154 GLY VAL LEU ILE ARG GLY ALA THR PRO HIS PHE ASP TYR SEQRES 8 A 154 ILE ALA SER GLU VAL SER LYS GLY LEU ALA ASN LEU SER SEQRES 9 A 154 LEU GLU LEU ARG LYS PRO ILE THR PHE GLY VAL ILE THR SEQRES 10 A 154 ALA ASP THR LEU GLU GLN ALA ILE GLU ARG ALA GLY THR SEQRES 11 A 154 LYS HIS GLY ASN LYS GLY TRP GLU ALA ALA LEU SER ALA SEQRES 12 A 154 ILE GLU MET ALA ASN LEU PHE LYS SER LEU ARG SEQRES 1 B 154 MET GLN ILE TYR GLU GLY LYS LEU THR ALA GLU GLY LEU SEQRES 2 B 154 ARG PHE GLY ILE VAL ALA SER ARG PHE ASN HIS ALA LEU SEQRES 3 B 154 VAL ASP ARG LEU VAL GLU GLY ALA ILE ASP CYS ILE VAL SEQRES 4 B 154 ARG HIS GLY GLY ARG GLU GLU ASP ILE THR LEU VAL ARG SEQRES 5 B 154 VAL PRO GLY SER TRP GLU ILE PRO VAL ALA ALA GLY GLU SEQRES 6 B 154 LEU ALA ARG LYS GLU ASP ILE ASP ALA VAL ILE ALA ILE SEQRES 7 B 154 GLY VAL LEU ILE ARG GLY ALA THR PRO HIS PHE ASP TYR SEQRES 8 B 154 ILE ALA SER GLU VAL SER LYS GLY LEU ALA ASN LEU SER SEQRES 9 B 154 LEU GLU LEU ARG LYS PRO ILE THR PHE GLY VAL ILE THR SEQRES 10 B 154 ALA ASP THR LEU GLU GLN ALA ILE GLU ARG ALA GLY THR SEQRES 11 B 154 LYS HIS GLY ASN LYS GLY TRP GLU ALA ALA LEU SER ALA SEQRES 12 B 154 ILE GLU MET ALA ASN LEU PHE LYS SER LEU ARG SEQRES 1 C 154 MET GLN ILE TYR GLU GLY LYS LEU THR ALA GLU GLY LEU SEQRES 2 C 154 ARG PHE GLY ILE VAL ALA SER ARG PHE ASN HIS ALA LEU SEQRES 3 C 154 VAL ASP ARG LEU VAL GLU GLY ALA ILE ASP CYS ILE VAL SEQRES 4 C 154 ARG HIS GLY GLY ARG GLU GLU ASP ILE THR LEU VAL ARG SEQRES 5 C 154 VAL PRO GLY SER TRP GLU ILE PRO VAL ALA ALA GLY GLU SEQRES 6 C 154 LEU ALA ARG LYS GLU ASP ILE ASP ALA VAL ILE ALA ILE SEQRES 7 C 154 GLY VAL LEU ILE ARG GLY ALA THR PRO HIS PHE ASP TYR SEQRES 8 C 154 ILE ALA SER GLU VAL SER LYS GLY LEU ALA ASN LEU SER SEQRES 9 C 154 LEU GLU LEU ARG LYS PRO ILE THR PHE GLY VAL ILE THR SEQRES 10 C 154 ALA ASP THR LEU GLU GLN ALA ILE GLU ARG ALA GLY THR SEQRES 11 C 154 LYS HIS GLY ASN LYS GLY TRP GLU ALA ALA LEU SER ALA SEQRES 12 C 154 ILE GLU MET ALA ASN LEU PHE LYS SER LEU ARG SEQRES 1 D 154 MET GLN ILE TYR GLU GLY LYS LEU THR ALA GLU GLY LEU SEQRES 2 D 154 ARG PHE GLY ILE VAL ALA SER ARG PHE ASN HIS ALA LEU SEQRES 3 D 154 VAL ASP ARG LEU VAL GLU GLY ALA ILE ASP CYS ILE VAL SEQRES 4 D 154 ARG HIS GLY GLY ARG GLU GLU ASP ILE THR LEU VAL ARG SEQRES 5 D 154 VAL PRO GLY SER TRP GLU ILE PRO VAL ALA ALA GLY GLU SEQRES 6 D 154 LEU ALA ARG LYS GLU ASP ILE ASP ALA VAL ILE ALA ILE SEQRES 7 D 154 GLY VAL LEU ILE ARG GLY ALA THR PRO HIS PHE ASP TYR SEQRES 8 D 154 ILE ALA SER GLU VAL SER LYS GLY LEU ALA ASN LEU SER SEQRES 9 D 154 LEU GLU LEU ARG LYS PRO ILE THR PHE GLY VAL ILE THR SEQRES 10 D 154 ALA ASP THR LEU GLU GLN ALA ILE GLU ARG ALA GLY THR SEQRES 11 D 154 LYS HIS GLY ASN LYS GLY TRP GLU ALA ALA LEU SER ALA SEQRES 12 D 154 ILE GLU MET ALA ASN LEU PHE LYS SER LEU ARG SEQRES 1 E 154 MET GLN ILE TYR GLU GLY LYS LEU THR ALA GLU GLY LEU SEQRES 2 E 154 ARG PHE GLY ILE VAL ALA SER ARG PHE ASN HIS ALA LEU SEQRES 3 E 154 VAL ASP ARG LEU VAL GLU GLY ALA ILE ASP CYS ILE VAL SEQRES 4 E 154 ARG HIS GLY GLY ARG GLU GLU ASP ILE THR LEU VAL ARG SEQRES 5 E 154 VAL PRO GLY SER TRP GLU ILE PRO VAL ALA ALA GLY GLU SEQRES 6 E 154 LEU ALA ARG LYS GLU ASP ILE ASP ALA VAL ILE ALA ILE SEQRES 7 E 154 GLY VAL LEU ILE ARG GLY ALA THR PRO HIS PHE ASP TYR SEQRES 8 E 154 ILE ALA SER GLU VAL SER LYS GLY LEU ALA ASN LEU SER SEQRES 9 E 154 LEU GLU LEU ARG LYS PRO ILE THR PHE GLY VAL ILE THR SEQRES 10 E 154 ALA ASP THR LEU GLU GLN ALA ILE GLU ARG ALA GLY THR SEQRES 11 E 154 LYS HIS GLY ASN LYS GLY TRP GLU ALA ALA LEU SER ALA SEQRES 12 E 154 ILE GLU MET ALA ASN LEU PHE LYS SER LEU ARG FORMUL 6 HOH *800(H2 O) HELIX 1 1 ASN A 23 HIS A 41 1 19 HELIX 2 2 ARG A 44 GLU A 46 5 3 HELIX 3 3 GLY A 55 TRP A 57 5 3 HELIX 4 4 GLU A 58 ARG A 68 1 11 HELIX 5 5 PRO A 87 ARG A 108 1 22 HELIX 6 6 THR A 120 ARG A 127 1 8 HELIX 7 7 LYS A 135 ARG A 154 1 20 HELIX 8 8 ASN B 23 HIS B 41 1 19 HELIX 9 9 ARG B 44 GLU B 46 5 3 HELIX 10 10 GLY B 55 TRP B 57 5 3 HELIX 11 11 GLU B 58 ARG B 68 1 11 HELIX 12 12 PRO B 87 ARG B 108 1 22 HELIX 13 13 THR B 120 ARG B 127 1 8 HELIX 14 14 LYS B 135 ARG B 154 1 20 HELIX 15 15 ASN C 23 HIS C 41 1 19 HELIX 16 16 ARG C 44 GLU C 46 5 3 HELIX 17 17 GLY C 55 TRP C 57 5 3 HELIX 18 18 GLU C 58 ARG C 68 1 11 HELIX 19 19 PRO C 87 ARG C 108 1 22 HELIX 20 20 THR C 120 ARG C 127 1 8 HELIX 21 21 LYS C 135 ARG C 154 1 20 HELIX 22 22 ASN D 23 HIS D 41 1 19 HELIX 23 23 ARG D 44 GLU D 46 5 3 HELIX 24 24 GLY D 55 TRP D 57 5 3 HELIX 25 25 GLU D 58 ARG D 68 1 11 HELIX 26 26 PRO D 87 ARG D 108 1 22 HELIX 27 27 THR D 120 ARG D 127 1 8 HELIX 28 28 LYS D 135 ARG D 154 1 20 HELIX 29 29 ASN E 23 HIS E 41 1 19 HELIX 30 30 ARG E 44 GLU E 46 5 3 HELIX 31 31 GLY E 55 TRP E 57 5 3 HELIX 32 32 GLU E 58 ARG E 68 1 11 HELIX 33 33 PRO E 87 ARG E 108 1 22 HELIX 34 34 THR E 120 ARG E 127 1 8 HELIX 35 35 LYS E 135 ARG E 154 1 20 SHEET 1 A 5 GLN A 2 TYR A 4 0 SHEET 2 A 5 ILE B 48 VAL B 53 1 O ILE B 48 N GLN A 2 SHEET 3 A 5 PHE B 15 SER B 20 1 O PHE B 15 N THR B 49 SHEET 4 A 5 ALA B 74 ILE B 82 1 O ALA B 74 N GLY B 16 SHEET 5 A 5 ILE B 111 ALA B 118 1 N THR B 112 O VAL B 75 SHEET 1 B 5 ILE A 111 ALA A 118 0 SHEET 2 B 5 ALA A 74 ILE A 82 1 O VAL A 75 N THR A 112 SHEET 3 B 5 PHE A 15 SER A 20 1 O GLY A 16 N ILE A 76 SHEET 4 B 5 ILE A 48 VAL A 53 1 O THR A 49 N ILE A 17 SHEET 5 B 5 GLN E 2 TYR E 4 1 O GLN E 2 N LEU A 50 SHEET 1 C 2 ALA A 128 THR A 130 0 SHEET 2 C 2 GLY A 133 ASN A 134 -1 O GLY A 133 N GLY A 129 SHEET 1 D 5 GLN B 2 TYR B 4 0 SHEET 2 D 5 ILE C 48 VAL C 53 1 O ILE C 48 N GLN B 2 SHEET 3 D 5 PHE C 15 SER C 20 1 O PHE C 15 N THR C 49 SHEET 4 D 5 ALA C 74 ILE C 82 1 O ALA C 74 N GLY C 16 SHEET 5 D 5 ILE C 111 ALA C 118 1 N THR C 112 O VAL C 75 SHEET 1 E 2 ALA B 128 THR B 130 0 SHEET 2 E 2 GLY B 133 ASN B 134 -1 O GLY B 133 N GLY B 129 SHEET 1 F 5 GLN C 2 TYR C 4 0 SHEET 2 F 5 ILE D 48 VAL D 53 1 O ILE D 48 N GLN C 2 SHEET 3 F 5 PHE D 15 SER D 20 1 O PHE D 15 N THR D 49 SHEET 4 F 5 ALA D 74 ILE D 82 1 O ALA D 74 N GLY D 16 SHEET 5 F 5 ILE D 111 ALA D 118 1 N THR D 112 O VAL D 75 SHEET 1 G 2 ALA C 128 THR C 130 0 SHEET 2 G 2 GLY C 133 ASN C 134 -1 O GLY C 133 N GLY C 129 SHEET 1 H 5 GLN D 2 TYR D 4 0 SHEET 2 H 5 ILE E 48 VAL E 53 1 O ILE E 48 N GLN D 2 SHEET 3 H 5 PHE E 15 SER E 20 1 O PHE E 15 N THR E 49 SHEET 4 H 5 ALA E 74 ILE E 82 1 O ALA E 74 N GLY E 16 SHEET 5 H 5 ILE E 111 ALA E 118 1 N THR E 112 O VAL E 75 SHEET 1 I 2 ALA D 128 THR D 130 0 SHEET 2 I 2 GLY D 133 ASN D 134 -1 O GLY D 133 N GLY D 129 SHEET 1 J 2 ALA E 128 THR E 130 0 SHEET 2 J 2 GLY E 133 ASN E 134 -1 O GLY E 133 N GLY E 129 CRYST1 180.820 180.820 180.820 90.00 90.00 90.00 I 2 3 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005530 0.00000