HEADER GENE REGULATION 22-DEC-00 1HS5 TITLE NMR SOLUTION STRUCTURE OF DESIGNED P53 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 324-357; COMPND 5 SYNONYM: P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, ANTI-PARALLEL BETA-TURN-HELIX, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.S.DAVISON,X.NIE,W.MA,Y.LI,C.KAY,S.BENCHIMOL,C.H.ARROWSMITH REVDAT 4 27-OCT-21 1HS5 1 REMARK SEQADV REVDAT 3 24-FEB-09 1HS5 1 VERSN REVDAT 2 28-MAR-01 1HS5 1 JRNL REVDAT 1 10-JAN-01 1HS5 0 JRNL AUTH T.S.DAVISON,X.NIE,W.MA,Y.LIN,C.KAY,S.BENCHIMOL, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL STRUCTURE AND FUNCTIONALITY OF A DESIGNED P53 DIMER. JRNL REF J.MOL.BIOL. V. 307 605 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11254385 JRNL DOI 10.1006/JMBI.2001.4450 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER, A.T. (X-PLOR), BRUNGER, A.T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HS5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012556. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 25MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM U-15N,13C; 25MM SODIUM REMARK 210 PHOSPHATE; 150MM SODIUM CHLORIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNHA; 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; 15N TOCSY-HSQC; REMARK 210 HCCH-TOCSY; CCC_TOCSY; (HB) REMARK 210 CBCA(CO)NNH; HNCACB; 2D 13C-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 18 H ASN A 22 1.52 REMARK 500 O PHE B 18 H ASN B 22 1.53 REMARK 500 H LEU A 7 O LEU B 7 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 4 -157.25 -157.32 REMARK 500 1 ALA A 32 -142.06 57.64 REMARK 500 1 TYR B 4 -157.37 -157.31 REMARK 500 1 ALA B 32 -142.21 57.27 REMARK 500 2 GLU A 3 53.89 -142.15 REMARK 500 2 GLU B 3 53.92 -142.02 REMARK 500 3 ARG A 19 -72.58 -43.89 REMARK 500 3 GLN A 31 -82.12 -102.77 REMARK 500 3 ALA A 32 86.22 -57.09 REMARK 500 3 ARG B 19 -72.20 -44.74 REMARK 500 3 GLN B 31 -82.25 -102.83 REMARK 500 3 ALA B 32 86.32 -56.96 REMARK 500 4 GLU A 3 107.48 -162.11 REMARK 500 4 GLN A 31 -75.48 -55.98 REMARK 500 4 GLU B 3 107.55 -162.07 REMARK 500 4 GLN B 31 -75.49 -56.06 REMARK 500 7 ARG A 10 29.69 -149.34 REMARK 500 7 ALA A 32 94.14 -42.22 REMARK 500 7 ARG B 10 29.71 -149.21 REMARK 500 7 ALA B 32 94.41 -42.14 REMARK 500 9 ALA A 32 54.17 -92.14 REMARK 500 9 ALA B 32 54.09 -92.19 REMARK 500 10 GLN A 31 -77.48 -135.01 REMARK 500 10 GLN B 31 -77.44 -134.83 REMARK 500 11 GLU A 3 93.99 -172.47 REMARK 500 11 GLU B 3 93.98 -172.37 REMARK 500 15 ARG A 10 40.65 -95.30 REMARK 500 15 GLN A 31 -61.95 -92.35 REMARK 500 15 ALA A 32 47.60 -95.45 REMARK 500 15 ARG B 10 40.77 -95.48 REMARK 500 15 GLN B 31 -61.77 -92.23 REMARK 500 15 ALA B 32 47.67 -95.73 REMARK 500 16 ALA A 32 68.95 -111.80 REMARK 500 16 ALA B 32 69.07 -111.78 REMARK 500 18 ALA A 32 -89.28 53.42 REMARK 500 18 ALA B 32 -89.35 53.53 REMARK 500 19 GLU A 3 -143.28 -136.45 REMARK 500 19 GLU B 3 -143.31 -136.54 REMARK 500 20 GLU A 3 -177.65 -178.90 REMARK 500 20 GLU B 3 -177.26 -178.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 12 0.32 SIDE CHAIN REMARK 500 1 ARG A 14 0.28 SIDE CHAIN REMARK 500 1 ARG A 19 0.22 SIDE CHAIN REMARK 500 1 ARG A 21 0.32 SIDE CHAIN REMARK 500 1 ARG B 12 0.32 SIDE CHAIN REMARK 500 1 ARG B 14 0.28 SIDE CHAIN REMARK 500 1 ARG B 19 0.22 SIDE CHAIN REMARK 500 1 ARG B 21 0.32 SIDE CHAIN REMARK 500 2 ARG A 10 0.31 SIDE CHAIN REMARK 500 2 ARG A 12 0.20 SIDE CHAIN REMARK 500 2 ARG A 14 0.22 SIDE CHAIN REMARK 500 2 ARG A 19 0.28 SIDE CHAIN REMARK 500 2 ARG A 21 0.12 SIDE CHAIN REMARK 500 2 ARG B 10 0.31 SIDE CHAIN REMARK 500 2 ARG B 12 0.20 SIDE CHAIN REMARK 500 2 ARG B 14 0.22 SIDE CHAIN REMARK 500 2 ARG B 19 0.28 SIDE CHAIN REMARK 500 2 ARG B 21 0.13 SIDE CHAIN REMARK 500 3 ARG A 10 0.31 SIDE CHAIN REMARK 500 3 ARG A 12 0.32 SIDE CHAIN REMARK 500 3 ARG A 14 0.28 SIDE CHAIN REMARK 500 3 ARG A 19 0.18 SIDE CHAIN REMARK 500 3 ARG A 21 0.29 SIDE CHAIN REMARK 500 3 ARG B 10 0.31 SIDE CHAIN REMARK 500 3 ARG B 12 0.32 SIDE CHAIN REMARK 500 3 ARG B 14 0.28 SIDE CHAIN REMARK 500 3 ARG B 19 0.18 SIDE CHAIN REMARK 500 3 ARG B 21 0.29 SIDE CHAIN REMARK 500 4 ARG A 10 0.28 SIDE CHAIN REMARK 500 4 ARG A 12 0.18 SIDE CHAIN REMARK 500 4 ARG A 14 0.09 SIDE CHAIN REMARK 500 4 ARG A 19 0.32 SIDE CHAIN REMARK 500 4 ARG A 21 0.17 SIDE CHAIN REMARK 500 4 ARG B 10 0.28 SIDE CHAIN REMARK 500 4 ARG B 12 0.18 SIDE CHAIN REMARK 500 4 ARG B 14 0.09 SIDE CHAIN REMARK 500 4 ARG B 19 0.32 SIDE CHAIN REMARK 500 4 ARG B 21 0.17 SIDE CHAIN REMARK 500 5 ARG A 10 0.23 SIDE CHAIN REMARK 500 5 ARG A 12 0.29 SIDE CHAIN REMARK 500 5 ARG A 19 0.24 SIDE CHAIN REMARK 500 5 ARG A 21 0.29 SIDE CHAIN REMARK 500 5 ARG B 10 0.23 SIDE CHAIN REMARK 500 5 ARG B 12 0.29 SIDE CHAIN REMARK 500 5 ARG B 19 0.24 SIDE CHAIN REMARK 500 5 ARG B 21 0.29 SIDE CHAIN REMARK 500 6 ARG A 10 0.31 SIDE CHAIN REMARK 500 6 ARG A 12 0.31 SIDE CHAIN REMARK 500 6 ARG A 14 0.20 SIDE CHAIN REMARK 500 6 ARG A 19 0.21 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 192 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1HS5 A 1 34 UNP P04637 P53_HUMAN 324 357 DBREF 1HS5 B 1 34 UNP P04637 P53_HUMAN 324 357 SEQADV 1HS5 GLN A 17 UNP P04637 MET 340 ENGINEERED MUTATION SEQADV 1HS5 ARG A 21 UNP P04637 LEU 344 ENGINEERED MUTATION SEQADV 1HS5 GLN B 17 UNP P04637 MET 340 ENGINEERED MUTATION SEQADV 1HS5 ARG B 21 UNP P04637 LEU 344 ENGINEERED MUTATION SEQRES 1 A 34 ASP GLY GLU TYR PHE THR LEU GLN ILE ARG GLY ARG GLU SEQRES 2 A 34 ARG PHE GLU GLN PHE ARG GLU ARG ASN GLU ALA LEU GLU SEQRES 3 A 34 LEU LYS ASP ALA GLN ALA GLY LYS SEQRES 1 B 34 ASP GLY GLU TYR PHE THR LEU GLN ILE ARG GLY ARG GLU SEQRES 2 B 34 ARG PHE GLU GLN PHE ARG GLU ARG ASN GLU ALA LEU GLU SEQRES 3 B 34 LEU LYS ASP ALA GLN ALA GLY LYS HELIX 1 1 GLY A 11 GLN A 31 1 21 HELIX 2 2 GLY B 11 GLN B 31 1 21 SHEET 1 A 2 PHE A 5 ILE A 9 0 SHEET 2 A 2 PHE B 5 ILE B 9 -1 N PHE B 5 O ILE A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1