HEADER PHOSPHORIC DIESTER HYDROLASE 14-DEC-92 1HSP OBSLTE 31-AUG-94 1HSP 2HSP TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE TITLE 2 C$GAMMA COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS PHOSPHORIC DIESTER HYDROLASE EXPDTA NMR, 11 STRUCTURES AUTHOR D.KOHDA,H.HATANAKA,M.ODAKA,F.INAGAKI REVDAT 3 31-AUG-94 1HSP 3 OBSLTE REVDAT 2 31-OCT-93 1HSP 1 COMPND REVDAT 1 15-APR-93 1HSP 0 JRNL AUTH D.KOHDA,H.HATANAKA,M.ODAKA,V.MANDIYAN,A.ULLRICH, JRNL AUTH 2 J.SCHLESSINGER,F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF JRNL TITL 2 PHOSPHOLIPASE CGAMMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HSP COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1HSP PDB CONTENTS 1HSP MODEL 0 THE MEAN STRUCTURE OF PLC-$ REMARK 5 GAMMA SH3 DOMAIN 1HSP MODELS 1-10 THE 10 STRUCTURES REMARK 5 CONSISTENT WITH THE NMR 1HSP DATA 1HSP REMARK 6 REMARK 6 1HSP THE MEAN STRUCTURE WAS OBTAINED BY AVERAGING THE 1HSP REMARK 6 COORDINATES OF THE INDIVIDUAL STRUCTURES AND SUBJECTING THE REMARK 6 1HSP RESULTING COORDINATES TO FURTHER RESTRAINED REMARK 6 MINIMIZATION. 1HSP REMARK 7 REMARK 7 1HSP HYDROGEN ATOMS IN THIS ENTRY HAVE BEEN ASSIGNED NAMES REMARK 7 1HSP CONSISTENT WITH THE RECOMMENDATIONS OF THE IUPAC-IUB REMARK 7 1HSP COMMISSION ON BIOCHEMICAL NOMENCLATURE (SEE,E.G., REMARK 7 J.MOL. 1HSP BIOL. 52, 1-17 (1970)). WE HAVE FOLLOWED RULE REMARK 7 4.4 OF THE 1HSP RECOMMENDATIONS WITH THE FOLLOWING REMARK 7 MODIFICATION-WHEN MORE 1HSP THAN ONE HYDROGEN ATOM IS REMARK 7 BONDED TO A SINGLE NON-HYDROGEN 1HSP ATOM, THE HYDROGEN REMARK 7 ATOM NUMBER DESIGNATION IS GIVEN AS THE 1HSP FIRST REMARK 7 CHARACTER OF THE ATOM NAME RATHER THAN AS THE LAST 1HSP REMARK 7 CHARACTER (E.G. H*BETA*1 IS DENOTED AS 1HB). 1HSP REMARK 8 REMARK 8 1HSP THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT REMARK 8 THE 1HSP RMS DIFFERENCE (MODELS 1-10) OR THE AVERAGE OF THE REMARK 8 RMS 1HSP DIFFERENCES (MODEL 0) PER ATOM BETWEEN THE REMARK 8 INDIVIDUAL 1HSP STRUCTURES AND THE MEAN STRUCTURE (IN REMARK 8 ANGSTROMS). THE RMS 1HSP DIFFERENCES WERE OBTAINED FOR A REMARK 8 GIVEN STRUCTURE AFTER THE 1HSP BACKBONE ATOMS OF RESIDUES REMARK 8 8-37, 41-45 AND 51-62 WERE 1HSP FITTED TO THE BACKBONE OF REMARK 8 THE MEAN STRUCTURE, AND THEN 1HSP AVERAGED. 1HSP REMARK 9 REMARK 9 1HSP THE SH3 DOMAIN OF HUMAN PLC-$GAMMA ENCOMPASSING REMARK 9 RESIDUES 1HSP 790-852 WAS EXPRESSED AS A GLUTATHIONE-S- REMARK 9 TRANSFERASE FUSION 1HSP PROTEIN IN $E.COLI. THE FUSION REMARK 9 PROTEIN WAS CLEAVED USING 1HSP THROMBIN. THE PURIFIED REMARK 9 RECOMBINANT SH3 DOMAIN CONTAINS 71 1HSP AMINO ACID RESIDUES REMARK 9 OF WHICH TWO AMINO TERMINAL (GLY SER) 1HSP AND SIX CARBOXYL REMARK 9 TERMINAL (GLU GLY ILE HIS ARG ASP) 1HSP RESIDUES ARE REMARK 9 DERIVED FROM THE EXPRESSION VECTOR. 1HSP REMARK 10 REMARK 10 1HSP ALL PEPTIDE BONDS ARE IN THE TRANS CONFORMATION. 1HSP REMARK 11 REMARK 11 1HSP STRAND 3 OF SHEET B3 CONTAINS A BETA-BULGE AT GLN 51 - REMARK 11 1HSP LEU 52. THIS IS REPRESENTED BY PRESENTING THE SHEET REMARK 11 TWICE 1HSP (SHEETS B3A AND B3B) WITH DIFFERENT STRANDS 3. REMARK 11 1HSP REMARK 12 REMARK 12 1HSP A COMPLETE LIST OF EXPERIMENTAL RESTRAINTS HAS BEEN REMARK 12 1HSP DEPOSITED WITH THE PROTEIN DATA BANK AND IS GIVEN IN REMARK 12 1HSP ENTRY R1HSPMR. 1HSP REMARK 13 REMARK 13 1HSP CORRECTION. CORRECT DOMAIN IDENTIFICATION ON COMPND REMARK 13 1HSP RECORD. 31-OCT-93. 1HSP REMARK 14 REMARK 14 1HSP CORRECTION. THIS ENTRY IS OBSOLETE. 31-AUG-94. 1HSP REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 0 LYS 6 156.69 56.06 REMARK 500 0 GLU 20 -117.35 -175.32 REMARK 500 0 LYS 27 145.04 55.81 REMARK 500 1 LYS 6 142.28 54.48 REMARK 500 1 LYS 27 146.40 55.09 REMARK 500 2 ALA 17 -132.46 171.29 REMARK 500 2 LYS 27 144.79 60.00 REMARK 500 3 GLU 20 -113.92 -179.77 REMARK 500 3 LYS 27 139.64 56.87 REMARK 500 4 LYS 16 150.04 21.26 REMARK 500 4 GLU 20 -114.92 177.21 REMARK 500 4 LYS 27 151.36 48.28 REMARK 500 4 ILE 68 143.30 56.91 REMARK 500 5 ARG 19 88.20 102.49 REMARK 500 5 LYS 27 145.25 55.51 REMARK 500 6 ALA 17 111.25 101.95 REMARK 500 6 LYS 27 154.29 50.09 REMARK 500 6 TYR 46 147.32 83.26 REMARK 500 6 HIS 69 155.48 54.31 REMARK 500 7 PHE 5 134.55 66.95 REMARK 500 7 LYS 27 128.98 38.45 REMARK 500 8 SER 2 164.26 54.77 REMARK 500 8 ALA 17 92.17 148.97 REMARK 500 8 GLU 20 -115.75 -174.16 REMARK 500 8 LYS 27 145.75 59.43 REMARK 500 9 PHE 5 123.39 57.39 REMARK 500 9 ALA 17 122.95 124.87 REMARK 500 9 LYS 27 133.92 40.71 REMARK 500 10 ALA 8 154.50 87.01 REMARK 500 10 LYS 49 127.58 56.59 SEQRES 1 71 GLY SER PRO THR PHE LYS CYS ALA VAL LYS ALA LEU PHE SEQRES 2 71 ASP TYR LYS ALA GLN ARG GLU ASP GLU LEU THR PHE ILE SEQRES 3 71 LYS SER ALA ILE ILE GLN ASN VAL GLU LYS GLN GLU GLY SEQRES 4 71 GLY TRP TRP ARG GLY ASP TYR GLY GLY LYS LYS GLN LEU SEQRES 5 71 TRP PHE PRO SER ASN TYR VAL GLU GLU MET VAL ASN PRO SEQRES 6 71 GLU GLY ILE HIS ARG ASP FTNOTE 1 BETA-BULGE STRUCTURE OCCURS AT GLN 51 - LEU 52. SHEET 1 B1 3 ALA 29 ASN 33 0 SHEET 2 B1 3 CYS 7 ALA 11 -1 O VAL 9 N ILE 31 SHEET 3 B1 3 VAL 59 MET 62 -1 O GLU 60 N LYS 10 SHEET 1 B2 2 PHE 13 ALA 17 0 SHEET 2 B2 2 THR 24 LYS 27 -1 O PHE 25 N TYR 15 SHEET 1 B3A 3 VAL 34 GLN 37 0 SHEET 2 B3A 3 TRP 41 TYR 46 -1 O ARG 43 N GLU 35 SHEET 3 B3A 3 LYS 49 LYS 50 -1 O LYS 49 N TYR 46 SHEET 1 B3B 3 VAL 34 GLN 37 0 SHEET 2 B3B 3 TRP 41 TYR 46 -1 O ARG 43 N GLU 35 SHEET 3 B3B 3 LEU 52 PRO 55 -1 O PHE 54 N TRP 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 0