HEADER OXIDOREDUCTASE 10-AUG-95 1HTB TITLE CRYSTALLIZATION OF HUMAN BETA3 ALCOHOL DEHYDROGENASE (10 MG/ML) IN 100 TITLE 2 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ AND 1 MM 4-IODOPYRAZOLE AT TITLE 3 25 C COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA3 ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA3 ADH; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: HOMODIMERIC WITH ONE NAD+ AND ONE 4-IODOPYRAZOLE PER COMPND 8 SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: LIVER; SOURCE 6 GENE: HUMAN BETA3 CDNA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3; SOURCE 10 EXPRESSION_SYSTEM_GENE: HUMAN BETA3 CDNA KEYWDS NAD+ DEPENDENT ALCOHOL DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.D.HURLEY,G.J.DAVIS REVDAT 4 07-FEB-24 1HTB 1 REMARK LINK REVDAT 3 24-FEB-09 1HTB 1 VERSN REVDAT 2 01-APR-03 1HTB 1 JRNL REVDAT 1 07-DEC-95 1HTB 0 JRNL AUTH G.J.DAVIS,W.F.BOSRON,C.L.STONE,K.OWUSU-DEKYI,T.D.HURLEY JRNL TITL X-RAY STRUCTURE OF HUMAN BETA3BETA3 ALCOHOL DEHYDROGENASE. JRNL TITL 2 THE CONTRIBUTION OF IONIC INTERACTIONS TO COENZYME BINDING. JRNL REF J.BIOL.CHEM. V. 271 17057 1996 JRNL REFN ISSN 0021-9258 JRNL PMID 8663387 JRNL DOI 10.1074/JBC.271.29.17057 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.D.HURLEY,W.F.BOSRON,C.L.STONE,L.M.AMZEL REMARK 1 TITL STRUCTURE OF THREE HUMAN BETA ALCOHOL DEHYDROGENASE VARIANTS REMARK 1 REF J.MOL.BIOL. V. 239 415 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 25643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.650 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.22 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.280 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.000 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE FOLLOWING DISTANCES ARE SIMILAR TO THOSE FOUND IN 1HDY REMARK 3 (REFERENCE 1 ABOVE) AND ARE ALSO SIMILAR TO THE INTERACTION REMARK 3 DISTANCES REPORTED BY EKLUND, H., SAMAMA, J.-P., WALLEN, L. REMARK 3 (1982) PYRAZOLE BINDING IN CRYSTALLINE BINARY AND TERNARY REMARK 3 COMPLEXES WITH LIVER ALCOHOL DEHYDROGENASE. BIOCHEMISTRY, REMARK 3 VOL. 21, PP. 4858 - 4866) BETWEEN 4-IODOPYRAZOLE AND HORSE REMARK 3 LIVER EE ADH (NO PDB ENTRY). SIMILAR CONTACT DISTANCES ARE REMARK 3 ALSO FOUND IN 1DEH. 4-IODOPYRAZOLE FORMS A REMARK 3 TRANSITION-STATE-LIKE COMPLEX WITH ADH AND EXHIBITS NEARLY REMARK 3 COVALENT BOND CONTACT DISTANCES BETWEEN ITS TWO ADJACENT REMARK 3 NITROGENS AND THE C4 ATOM OF NAD+ AND THE CATALYTIC ZINC REMARK 3 ATOM: REMARK 3 377 A NAD NC4 378 A PYZ N2 HET-HET 1.7 REMARK 3 376 B ZN ZN 378 B PYZ N1 HET-HET 2.0 REMARK 3 377 B NAD NC4 378 B PYZ N2 HET-HET 2.1 REMARK 3 376 A ZN ZN 378 A PYZ N1 HET-HET 2.3 REMARK 3 REMARK 3 RESIDUE ILE 368 IS AN OUTLIER IN THE RAMACHANDRAN PLOT. IT REMARK 3 LIES IN THIS REGION OF THE RAMACHANDRAN PLOT IN ALL ADH REMARK 3 STRUCTURES DEPOSITED IN THE DATA BANK. THUS, IT APPEARS REMARK 3 THAT LOCAL STRUCTURAL FEATURES CONSTRAIN ITS CONFORMATION REMARK 3 TO THIS POSITION. REMARK 3 REMARK 3 SER B 298 APPEARS TO OCCUPY AT LEAST TWO DISTINCT REMARK 3 CONFORMATIONS. THE AUTHORS HAVE NOT ATTEMPTED TO MODEL REMARK 3 POSITIONAL DISORDER, BUT ANY ONE CONFORMATION DOES NOT REMARK 3 REFINE WELL TO THE OBSERVED DENSITY. THIS PROBLEM DOES NOT REMARK 3 OCCUR IN THE A SUBUNIT. REMARK 4 REMARK 4 1HTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS IIC (HAGASHI/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26989 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 47.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C4N NAD B 377 N2 PYZ B 378 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 17.84 59.19 REMARK 500 HIS A 67 -10.16 -152.23 REMARK 500 PRO A 119 98.40 -50.33 REMARK 500 CYS A 174 -74.71 -156.83 REMARK 500 ILE A 269 -55.33 -128.14 REMARK 500 CYS A 286 24.23 -140.64 REMARK 500 SER A 324 -76.35 -44.24 REMARK 500 ILE A 368 -89.05 -113.09 REMARK 500 HIS B 67 -20.50 -153.92 REMARK 500 SER B 144 71.40 50.82 REMARK 500 ILE B 160 -168.76 -123.10 REMARK 500 ALA B 162 47.40 -75.99 REMARK 500 ALA B 163 3.09 -164.81 REMARK 500 PRO B 165 92.57 -66.72 REMARK 500 CYS B 174 -78.90 -159.13 REMARK 500 LYS B 188 47.04 70.71 REMARK 500 ILE B 269 -71.20 -126.44 REMARK 500 CYS B 286 23.43 -140.35 REMARK 500 SER B 298 -24.79 65.38 REMARK 500 ILE B 368 -84.89 -104.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 103.2 REMARK 620 3 CYS A 174 SG 116.2 124.4 REMARK 620 4 PYZ A 378 N1 110.8 104.0 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 108.4 REMARK 620 3 CYS A 103 SG 115.9 102.9 REMARK 620 4 CYS A 111 SG 106.0 118.0 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 101.2 REMARK 620 3 CYS B 174 SG 105.8 113.7 REMARK 620 4 PYZ B 378 N1 112.1 103.9 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 108.4 REMARK 620 3 CYS B 103 SG 117.3 107.1 REMARK 620 4 CYS B 111 SG 101.6 119.2 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ZA2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ZB1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ZB2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYZ A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYZ B 378 DBREF 1HTB A 1 374 UNP P00325 ADHB_HUMAN 2 375 DBREF 1HTB B 1 374 UNP P00325 ADHB_HUMAN 2 375 SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU VAL LYS LYS PRO PHE SER ILE GLU ASP VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA TYR GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA VAL GLY ILE CYS ARG THR ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 A 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL ASN VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA VAL SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 A 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ALA SER GLN SEQRES 24 A 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA VAL TYR GLY GLY PHE LYS SER LYS SEQRES 26 A 374 GLU GLY ILE PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE SER LEU ASP ALA LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU HIS SER SEQRES 29 A 374 GLY LYS SER ILE CYS THR VAL LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU VAL LYS LYS PRO PHE SER ILE GLU ASP VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA TYR GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA VAL GLY ILE CYS ARG THR ASP ASP HIS VAL SEQRES 5 B 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 B 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 B 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 B 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL ASN VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA VAL SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 B 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 B 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ALA SER GLN SEQRES 24 B 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA VAL TYR GLY GLY PHE LYS SER LYS SEQRES 26 B 374 GLU GLY ILE PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE SER LEU ASP ALA LEU ILE THR HIS VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU HIS SER SEQRES 29 B 374 GLY LYS SER ILE CYS THR VAL LEU THR PHE HET ZN A 375 1 HET ZN A 376 1 HET NAD A 377 44 HET PYZ A 378 6 HET ZN B 375 1 HET ZN B 376 1 HET CL B 601 1 HET NAD B 377 44 HET PYZ B 378 6 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PYZ 4-IODOPYRAZOLE HETNAM CL CHLORIDE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 PYZ 2(C3 H3 I N2) FORMUL 9 CL CL 1- FORMUL 12 HOH *142(H2 O) HELIX 1 1 ARG A 47 VAL A 53 1 7 HELIX 2 2 GLU A 154 ALA A 156 5 3 HELIX 3 3 LEU A 166 GLY A 173 1 8 HELIX 4 4 GLY A 175 VAL A 184 1 10 HELIX 5 5 GLY A 202 ALA A 214 1 13 HELIX 6 6 LYS A 226 LEU A 235 5 10 HELIX 7 7 PRO A 243 ASP A 245 5 3 HELIX 8 8 ILE A 250 MET A 257 1 8 HELIX 9 9 LEU A 272 LEU A 280 1 9 HELIX 10 10 PRO A 305 LEU A 309 5 5 HELIX 11 11 TYR A 319 GLY A 321 5 3 HELIX 12 12 SER A 324 MET A 336 1 13 HELIX 13 13 PHE A 352 SER A 364 5 13 HELIX 14 14 ARG B 47 VAL B 53 1 7 HELIX 15 15 ARG B 101 LYS B 104 1 4 HELIX 16 16 GLU B 154 ALA B 156 5 3 HELIX 17 17 LEU B 166 GLY B 173 1 8 HELIX 18 18 GLY B 175 VAL B 184 1 10 HELIX 19 19 GLY B 202 ALA B 213 1 12 HELIX 20 20 LYS B 226 LEU B 235 5 10 HELIX 21 21 PRO B 243 ASP B 245 5 3 HELIX 22 22 ILE B 250 GLU B 256 1 7 HELIX 23 23 LEU B 272 LEU B 280 1 9 HELIX 24 24 PRO B 305 LEU B 309 5 5 HELIX 25 25 TYR B 319 GLY B 321 5 3 HELIX 26 26 SER B 324 MET B 336 1 13 HELIX 27 27 PHE B 352 SER B 364 5 13 SHEET 1 A 4 ILE A 7 VAL A 13 0 SHEET 2 A 4 SER A 22 VAL A 28 -1 N VAL A 28 O ILE A 7 SHEET 3 A 4 PHE A 130 CYS A 132 -1 N THR A 131 O GLU A 27 SHEET 4 A 4 LYS A 135 ILE A 137 -1 N ILE A 137 O PHE A 130 SHEET 1 B 3 TYR A 149 ASP A 153 0 SHEET 2 B 3 GLU A 35 MET A 40 -1 N ILE A 38 O THR A 150 SHEET 3 B 3 GLY A 71 VAL A 76 -1 N SER A 75 O ARG A 37 SHEET 1 C 4 GLU A 68 ALA A 70 0 SHEET 2 C 4 ALA A 42 GLY A 44 -1 N GLY A 44 O GLU A 68 SHEET 3 C 4 CYS A 369 THR A 373 -1 N LEU A 372 O VAL A 43 SHEET 4 C 4 ILE A 346 PRO A 351 1 N THR A 347 O CYS A 369 SHEET 1 D 2 VAL A 89 PRO A 91 0 SHEET 2 D 2 VAL A 157 LYS A 159 -1 N ALA A 158 O ILE A 90 SHEET 1 E12 GLU B 239 ILE B 241 0 SHEET 2 E12 ARG B 218 VAL B 222 1 N ALA B 221 O GLU B 239 SHEET 3 E12 THR B 194 PHE B 198 1 N CYS B 195 O ARG B 218 SHEET 4 E12 PHE B 264 GLU B 267 1 N PHE B 264 O ALA B 196 SHEET 5 E12 THR B 288 ILE B 291 1 N THR B 288 O SER B 265 SHEET 6 E12 THR B 313 GLY B 316 1 N THR B 313 O SER B 289 SHEET 7 E12 THR A 313 GLY A 316 -1 N TRP A 314 O TRP B 314 SHEET 8 E12 THR A 288 ILE A 291 1 N SER A 289 O THR A 313 SHEET 9 E12 PHE A 264 GLU A 267 1 N SER A 265 O THR A 288 SHEET 10 E12 THR A 194 PHE A 198 1 N ALA A 196 O PHE A 264 SHEET 11 E12 ARG A 218 VAL A 222 1 N ARG A 218 O CYS A 195 SHEET 12 E12 GLU A 239 ILE A 241 1 N GLU A 239 O ALA A 221 SHEET 1 F 2 LEU A 301 ILE A 303 0 SHEET 2 F 2 LEU B 301 ILE B 303 -1 N ILE B 303 O LEU A 301 SHEET 1 G 2 ILE B 7 VAL B 13 0 SHEET 2 G 2 SER B 22 VAL B 28 -1 N VAL B 28 O ILE B 7 SHEET 1 H 3 TYR B 149 ASP B 153 0 SHEET 2 H 3 GLU B 35 MET B 40 -1 N ILE B 38 O THR B 150 SHEET 3 H 3 GLY B 71 VAL B 76 -1 N SER B 75 O ARG B 37 SHEET 1 I 3 ALA B 42 GLY B 44 0 SHEET 2 I 3 CYS B 369 THR B 373 -1 N LEU B 372 O VAL B 43 SHEET 3 I 3 ILE B 346 PRO B 351 1 N THR B 347 O CYS B 369 SHEET 1 J 2 VAL B 89 PRO B 91 0 SHEET 2 J 2 VAL B 157 LYS B 159 -1 N ALA B 158 O ILE B 90 SHEET 1 K 2 PHE B 130 CYS B 132 0 SHEET 2 K 2 LYS B 135 ILE B 137 -1 N ILE B 137 O PHE B 130 LINK C4N NAD A 377 N2 PYZ A 378 1555 1555 1.74 LINK SG CYS A 46 ZN ZN A 376 1555 1555 2.26 LINK NE2 HIS A 67 ZN ZN A 376 1555 1555 2.10 LINK SG CYS A 97 ZN ZN A 375 1555 1555 2.38 LINK SG CYS A 100 ZN ZN A 375 1555 1555 2.28 LINK SG CYS A 103 ZN ZN A 375 1555 1555 2.26 LINK SG CYS A 111 ZN ZN A 375 1555 1555 2.20 LINK SG CYS A 174 ZN ZN A 376 1555 1555 2.17 LINK ZN ZN A 376 N1 PYZ A 378 1555 1555 2.30 LINK SG CYS B 46 ZN ZN B 376 1555 1555 2.32 LINK NE2 HIS B 67 ZN ZN B 376 1555 1555 2.26 LINK SG CYS B 97 ZN ZN B 375 1555 1555 2.23 LINK SG CYS B 100 ZN ZN B 375 1555 1555 2.22 LINK SG CYS B 103 ZN ZN B 375 1555 1555 2.22 LINK SG CYS B 111 ZN ZN B 375 1555 1555 2.37 LINK SG CYS B 174 ZN ZN B 376 1555 1555 2.04 LINK ZN ZN B 376 N1 PYZ B 378 1555 1555 1.99 CISPEP 1 LEU A 61 PRO A 62 0 -0.38 CISPEP 2 LEU B 61 PRO B 62 0 0.13 SITE 1 ZA1 5 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 2 ZA1 5 ZN A 375 SITE 1 ZA2 5 CYS A 46 HIS A 67 CYS A 174 ZN A 376 SITE 2 ZA2 5 PYZ A 378 SITE 1 ZB1 5 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 2 ZB1 5 ZN B 375 SITE 1 ZB2 5 CYS B 46 HIS B 67 CYS B 174 ZN B 376 SITE 2 ZB2 5 PYZ B 378 SITE 1 AC1 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC2 5 CYS A 46 HIS A 67 CYS A 174 NAD A 377 SITE 2 AC2 5 PYZ A 378 SITE 1 AC3 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC4 5 CYS B 46 HIS B 67 CYS B 174 NAD B 377 SITE 2 AC4 5 PYZ B 378 SITE 1 AC5 2 LYS A 5 ARG B 128 SITE 1 AC6 30 CYS A 46 ARG A 47 THR A 48 HIS A 51 SITE 2 AC6 30 CYS A 174 THR A 178 GLY A 199 GLY A 201 SITE 3 AC6 30 GLY A 202 VAL A 203 ASP A 223 ILE A 224 SITE 4 AC6 30 ASN A 225 LYS A 228 VAL A 268 ILE A 269 SITE 5 AC6 30 ARG A 271 VAL A 292 GLY A 293 VAL A 294 SITE 6 AC6 30 ALA A 317 VAL A 318 TYR A 319 LEU A 362 SITE 7 AC6 30 ZN A 376 PYZ A 378 HOH A 387 HOH A 410 SITE 8 AC6 30 HOH A 412 HOH A 437 SITE 1 AC7 7 THR A 48 HIS A 67 PHE A 93 LEU A 116 SITE 2 AC7 7 CYS A 174 ZN A 376 NAD A 377 SITE 1 AC8 30 CYS B 46 ARG B 47 THR B 48 HIS B 51 SITE 2 AC8 30 CYS B 174 THR B 178 GLY B 201 GLY B 202 SITE 3 AC8 30 VAL B 203 ASP B 223 ILE B 224 ASN B 225 SITE 4 AC8 30 LYS B 228 VAL B 268 ILE B 269 ARG B 271 SITE 5 AC8 30 VAL B 292 GLY B 293 VAL B 294 ALA B 317 SITE 6 AC8 30 VAL B 318 TYR B 319 LEU B 362 ZN B 376 SITE 7 AC8 30 PYZ B 378 HOH B 622 HOH B 623 HOH B 645 SITE 8 AC8 30 HOH B 653 HOH B 658 SITE 1 AC9 8 CYS B 46 THR B 48 HIS B 67 PHE B 93 SITE 2 AC9 8 LEU B 116 CYS B 174 ZN B 376 NAD B 377 CRYST1 54.030 44.430 92.740 92.71 103.17 69.15 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018508 -0.007049 0.004596 0.00000 SCALE2 0.000000 0.024084 -0.000896 0.00000 SCALE3 0.000000 0.000000 0.011082 0.00000 MTRIX1 1 0.073700 0.979900 -0.185300 -10.21800 1 MTRIX2 1 0.978400 -0.107100 -0.176800 -6.41500 1 MTRIX3 1 -0.193000 -0.168300 -0.966700 -90.96700 1