HEADER CYTOKINE(CHEMOTACTIC) 31-JAN-94 1HUN TITLE SOLUTION STRUCTURE OF THE CHEMOKINE HMIP-1BETA(SLASH)ACT-2 BY MULTI- TITLE 2 DIMENSIONAL NMR: A NOVEL CHEMOKINE DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN MACROPHAGE INFLAMMATORY PROTEIN 1 BETA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS CYTOKINE(CHEMOTACTIC) EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR G.M.CLORE,P.J.LODI,D.S.GARRETT,A.M.GRONENBORN REVDAT 3 23-FEB-22 1HUN 1 REMARK REVDAT 2 24-FEB-09 1HUN 1 VERSN REVDAT 1 30-APR-94 1HUN 0 JRNL AUTH P.J.LODI,D.S.GARRETT,J.KUSZEWSKI,M.L.TSANG,J.A.WEATHERBEE, JRNL AUTH 2 W.J.LEONARD,A.M.GRONENBORN,G.M.CLORE JRNL TITL HIGH-RESOLUTION SOLUTION STRUCTURE OF THE BETA CHEMOKINE JRNL TITL 2 HMIP-1 BETA BY MULTIDIMENSIONAL NMR. JRNL REF SCIENCE V. 263 1762 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8134838 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESTRAINED MINIMIZED AVERAGE STRUCTURE OVER 35 FILES REMARK 3 AVE.RMS DIFF. TO MEAN FOR BACKBONE REMARK 3 (4-69)= 0.304637 ANGSTROMS REMARK 3 AVE.RMS DIFF. TO MEAN FOR ALL ORDERED NON-H-ATOMS REMARK 3 (4-69)= 0.45 ANGSTROMS REMARK 3 AVE.RMS DIFF. TO MEAN FOR ALL NON-H-ATOMS REMARK 3 (4-69)= 0.706906 ANGSTROMS REMARK 3 REMARK 3 THE 3D STRUCTURE OF THE HMIP-1BETA DIMER IN SOLUTION BY NMR REMARK 3 IS BASED ON 3586 EXPERIMENTAL RESTRAINTS COMPRISING: 3132 REMARK 3 STRUCTURE USEFUL INTERPROTON DISTANCE RESTRAINTS OF WHICH REMARK 3 228 ARE INTERSUBUNIT; 24 RESTRAINTS FOR 12 H-BONDS REMARK 3 INVOLVING TIGHTLY BOUND WATER MOLECULES; 108 RESTRAINTS FOR REMARK 3 54 BACKBONE HYDROGEN BONDS INVOLVING SLOWLY EXCHANGING REMARK 3 AMIDE PROTONS; 220 TORSION ANGLE RESTRAINTS (122 PHI, 10 REMARK 3 PSI, 80 CHI1 AND 8 CHI2); AND 102 HN-HALPHA THREE-BOND REMARK 3 COUPLING CONSTANTS. A COMPLETE LIST OF EXPERIMENTAL REMARK 3 RESTRAINTS AND 1H, 13C AND 15N ASSIGNMENTS ARE AVAILABLE REMARK 3 FROM THE PROTEIN DATA BANK AS A SEPARATE ENTRY. REMARK 3 REMARK 3 THE STRUCTURES ARE CALCULATED USING THE HYBRID METRIC REMARK 3 MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING REMARK 3 METHOD DESCRIBED BY: NILGES, M., CLORE, G.M. & GRONENBORN, REMARK 3 A.M. (1988) FEBS LETT 229, 317-324. ALL STRUCTURAL REMARK 3 STATISTICS ARE GIVEN IN THE REFERENCE. REMARK 3 REMARK 3 THE FIELD THAT CONTAINS THE B VALUE IN X-RAY STRUCTURES REMARK 3 (COLUMNS 61 - 66) HAS NO MEANING IN THIS ENTRY. REMARK 4 REMARK 4 1HUN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174032. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS B 48 HE21 GLN B 49 1.30 REMARK 500 HZ1 LYS A 48 HE21 GLN A 49 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 102.83 -55.26 REMARK 500 1 SER A 5 -97.66 -91.23 REMARK 500 1 ASP A 6 68.31 -156.45 REMARK 500 1 PRO A 8 -157.67 -60.75 REMARK 500 1 ALA A 10 82.20 -69.56 REMARK 500 1 SER A 14 -156.99 -157.10 REMARK 500 1 THR A 16 -161.38 -59.92 REMARK 500 1 ASP A 27 -171.36 -170.25 REMARK 500 1 THR A 31 -164.84 -74.58 REMARK 500 1 SER A 32 -141.83 -86.52 REMARK 500 1 SER A 33 -36.82 -145.89 REMARK 500 1 SER A 36 31.49 -66.10 REMARK 500 1 GLN A 37 66.06 -154.58 REMARK 500 1 THR A 44 -152.95 -99.27 REMARK 500 1 SER A 47 -121.00 -165.75 REMARK 500 1 LYS A 48 -79.15 -162.28 REMARK 500 1 LEU A 68 -105.69 -77.38 REMARK 500 1 PRO B 2 102.86 -55.26 REMARK 500 1 SER B 5 -97.64 -91.24 REMARK 500 1 ASP B 6 68.37 -156.46 REMARK 500 1 PRO B 8 -157.66 -60.66 REMARK 500 1 ALA B 10 82.28 -69.66 REMARK 500 1 SER B 14 -157.01 -157.04 REMARK 500 1 THR B 16 -161.38 -59.98 REMARK 500 1 ASP B 27 -171.40 -170.17 REMARK 500 1 THR B 31 -164.87 -74.49 REMARK 500 1 SER B 32 -141.86 -86.52 REMARK 500 1 SER B 33 -36.93 -145.83 REMARK 500 1 SER B 36 31.55 -66.13 REMARK 500 1 GLN B 37 65.93 -154.59 REMARK 500 1 THR B 44 -152.97 -99.34 REMARK 500 1 SER B 47 -121.04 -165.75 REMARK 500 1 LYS B 48 -79.15 -162.17 REMARK 500 1 LEU B 68 -105.61 -77.48 REMARK 500 2 ASP A 6 69.78 -157.10 REMARK 500 2 PRO A 8 -159.20 -60.53 REMARK 500 2 ALA A 10 81.97 -69.52 REMARK 500 2 SER A 14 -154.06 -156.43 REMARK 500 2 THR A 16 -163.71 -58.38 REMARK 500 2 ALA A 17 11.61 -143.38 REMARK 500 2 PHE A 24 29.41 -140.24 REMARK 500 2 ASP A 27 -172.73 -170.04 REMARK 500 2 THR A 31 -166.19 -73.14 REMARK 500 2 SER A 32 -146.10 -84.57 REMARK 500 2 SER A 33 -36.38 -141.37 REMARK 500 2 SER A 36 32.04 -66.61 REMARK 500 2 GLN A 37 66.11 -154.23 REMARK 500 2 PRO A 38 -178.66 -67.65 REMARK 500 2 SER A 47 -122.07 -169.38 REMARK 500 2 LYS A 48 -92.40 -159.85 REMARK 500 REMARK 500 THIS ENTRY HAS 1154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HUM RELATED DB: PDB DBREF 1HUN A 1 69 UNP P13236 CCL4_HUMAN 24 92 DBREF 1HUN B 1 69 UNP P13236 CCL4_HUMAN 24 92 SEQRES 1 A 69 ALA PRO MET GLY SER ASP PRO PRO THR ALA CYS CYS PHE SEQRES 2 A 69 SER TYR THR ALA ARG LYS LEU PRO ARG ASN PHE VAL VAL SEQRES 3 A 69 ASP TYR TYR GLU THR SER SER LEU CYS SER GLN PRO ALA SEQRES 4 A 69 VAL VAL PHE GLN THR LYS ARG SER LYS GLN VAL CYS ALA SEQRES 5 A 69 ASP PRO SER GLU SER TRP VAL GLN GLU TYR VAL TYR ASP SEQRES 6 A 69 LEU GLU LEU ASN SEQRES 1 B 69 ALA PRO MET GLY SER ASP PRO PRO THR ALA CYS CYS PHE SEQRES 2 B 69 SER TYR THR ALA ARG LYS LEU PRO ARG ASN PHE VAL VAL SEQRES 3 B 69 ASP TYR TYR GLU THR SER SER LEU CYS SER GLN PRO ALA SEQRES 4 B 69 VAL VAL PHE GLN THR LYS ARG SER LYS GLN VAL CYS ALA SEQRES 5 B 69 ASP PRO SER GLU SER TRP VAL GLN GLU TYR VAL TYR ASP SEQRES 6 B 69 LEU GLU LEU ASN FORMUL 3 HOH *4(H2 O) HELIX 1 1 PRO A 21 VAL A 25 5 5 HELIX 2 2 GLU A 56 LEU A 68 1 13 HELIX 3 3 PRO B 21 VAL B 25 5 5 HELIX 4 4 GLU B 56 LEU B 68 1 13 SHEET 1 A 3 ASP A 27 GLU A 30 0 SHEET 2 A 3 VAL A 40 GLN A 43 -1 O VAL A 41 N TYR A 29 SHEET 3 A 3 GLN A 49 ALA A 52 -1 O VAL A 50 N PHE A 42 SHEET 1 B 3 ASP B 27 GLU B 30 0 SHEET 2 B 3 VAL B 40 GLN B 43 -1 O VAL B 41 N TYR B 29 SHEET 3 B 3 GLN B 49 ALA B 52 -1 O VAL B 50 N PHE B 42 SSBOND 1 CYS A 11 CYS A 35 1555 1555 2.02 SSBOND 2 CYS A 12 CYS A 51 1555 1555 2.02 SSBOND 3 CYS B 11 CYS B 35 1555 1555 2.02 SSBOND 4 CYS B 12 CYS B 51 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1