HEADER SIGNALING PROTEIN 10-JAN-01 1HWU TITLE STRUCTURE OF PII PROTEIN FROM HERBASPIRILLUM SEROPEDICAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERBASPIRILLUM SEROPEDICAE; SOURCE 3 ORGANISM_TAXID: 964; SOURCE 4 GENE: GLNB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RB9065(LAMBDA)DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS HERBASPIRILLUM SEROPEDICAE PII, BETA-ALPHA-BETA MOTIF, SIGNAL KEYWDS 2 TRANSDUCTION PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.BENELLI,M.BUCK,I.POLIKARPOV,E.M.DE SOUZA,L.M.CRUZ,F.O.PEDROSA REVDAT 3 09-AUG-23 1HWU 1 REMARK REVDAT 2 24-FEB-09 1HWU 1 VERSN REVDAT 1 17-JUN-03 1HWU 0 JRNL AUTH E.MACHADO BENELLI,M.BUCK,I.POLIKARPOV,E.MALTEMPI DE SOUZA, JRNL AUTH 2 L.M.CRUZ,F.O.PEDROSA JRNL TITL HERBASPIRILLUM SEROPEDICAE SIGNAL TRANSDUCTION PROTEIN PII JRNL TITL 2 IS STRUCTURALLY SIMILAR TO THE ENTERIC GLNK. JRNL REF EUR.J.BIOCHEM. V. 269 3296 2002 JRNL REFN ISSN 0014-2956 JRNL PMID 12084071 JRNL DOI 10.1046/J.1432-1033.2002.03011.X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 146413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.38 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 13.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PII REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, MAGNESIUM ACETATE, REMARK 280 METHYLPENTADIOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.41000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -41.16000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.47500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 HIS A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 LEU A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 GLY B 37 REMARK 465 ARG B 38 REMARK 465 GLN B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 HIS B 42 REMARK 465 GLY B 108 REMARK 465 PRO B 109 REMARK 465 ASP B 110 REMARK 465 ALA B 111 REMARK 465 VAL B 112 REMARK 465 GLY C 37 REMARK 465 ARG C 38 REMARK 465 GLN C 39 REMARK 465 LYS C 40 REMARK 465 GLY C 41 REMARK 465 HIS C 42 REMARK 465 THR C 43 REMARK 465 GLU C 44 REMARK 465 LEU C 45 REMARK 465 TYR C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 ALA C 49 REMARK 465 GLU C 50 REMARK 465 TYR C 51 REMARK 465 VAL C 52 REMARK 465 VAL C 53 REMARK 465 ASP C 54 REMARK 465 PHE C 55 REMARK 465 LEU C 56 REMARK 465 GLY D 37 REMARK 465 ARG D 38 REMARK 465 GLN D 39 REMARK 465 LYS D 40 REMARK 465 GLY D 41 REMARK 465 HIS D 42 REMARK 465 THR D 43 REMARK 465 GLU D 44 REMARK 465 LEU D 45 REMARK 465 TYR D 46 REMARK 465 ARG D 47 REMARK 465 GLY D 48 REMARK 465 ALA D 49 REMARK 465 PHE E 36 REMARK 465 GLY E 37 REMARK 465 ARG E 38 REMARK 465 GLN E 39 REMARK 465 LYS E 40 REMARK 465 GLY E 41 REMARK 465 HIS E 42 REMARK 465 THR E 43 REMARK 465 GLU E 44 REMARK 465 LEU E 45 REMARK 465 TYR E 46 REMARK 465 ARG E 47 REMARK 465 GLY E 48 REMARK 465 ALA E 49 REMARK 465 GLU E 50 REMARK 465 TYR E 51 REMARK 465 VAL E 52 REMARK 465 VAL E 53 REMARK 465 ASP E 54 REMARK 465 PHE E 55 REMARK 465 LEU E 56 REMARK 465 GLU E 106 REMARK 465 THR E 107 REMARK 465 GLY E 108 REMARK 465 PRO E 109 REMARK 465 ASP E 110 REMARK 465 ALA E 111 REMARK 465 VAL E 112 REMARK 465 PHE F 36 REMARK 465 GLY F 37 REMARK 465 ARG F 38 REMARK 465 GLN F 39 REMARK 465 LYS F 40 REMARK 465 GLY F 41 REMARK 465 HIS F 42 REMARK 465 THR F 43 REMARK 465 GLU F 44 REMARK 465 LEU F 45 REMARK 465 TYR F 46 REMARK 465 ARG F 47 REMARK 465 GLY F 48 REMARK 465 ALA F 49 REMARK 465 GLU F 50 REMARK 465 TYR F 51 REMARK 465 VAL F 52 REMARK 465 VAL F 53 REMARK 465 ASP F 54 REMARK 465 PHE F 55 REMARK 465 LEU F 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 LYS F 68 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 17 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PHE B 92 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 101 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG C 17 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP C 88 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG C 103 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU D 20 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG D 101 NE - CZ - NH2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG D 103 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP D 110 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP E 14 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL F 63 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG F 82 CD - NE - CZ ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG F 101 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG F 101 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG F 103 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 -71.60 -103.03 REMARK 500 THR C 26 -163.03 -126.18 REMARK 500 THR E 83 -32.13 -135.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 21 -10.85 REMARK 500 LYS A 79 11.63 REMARK 500 VAL A 96 -10.58 REMARK 500 PRO B 10 -10.65 REMARK 500 LYS C 58 -11.78 REMARK 500 VAL C 64 12.06 REMARK 500 LYS C 90 -10.03 REMARK 500 PRO D 57 15.26 REMARK 500 GLU D 62 10.22 REMARK 500 VAL D 69 10.01 REMARK 500 THR F 104 10.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH F 130 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PII RELATED DB: PDB REMARK 900 PII, GLNB PRODUCT DBREF 1HWU A 1 112 UNP P94852 P94852_HERSE 1 112 DBREF 1HWU B 1 112 UNP P94852 P94852_HERSE 1 112 DBREF 1HWU C 1 112 UNP P94852 P94852_HERSE 1 112 DBREF 1HWU D 1 112 UNP P94852 P94852_HERSE 1 112 DBREF 1HWU E 1 112 UNP P94852 P94852_HERSE 1 112 DBREF 1HWU F 1 112 UNP P94852 P94852_HERSE 1 112 SEQRES 1 A 112 MET LYS GLN VAL THR ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL ARG GLU SER LEU ALA GLU VAL GLY VAL THR SEQRES 3 A 112 GLY LEU THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR VAL SEQRES 5 A 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU VAL VAL VAL SEQRES 6 A 112 ASP ASP LYS VAL VAL GLU GLN ALA VAL ASP ALA ILE ILE SEQRES 7 A 112 LYS ALA ALA ARG THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL GLN GLU VAL GLU GLN VAL ILE ARG ILE ARG THR SEQRES 9 A 112 GLY GLU THR GLY PRO ASP ALA VAL SEQRES 1 B 112 MET LYS GLN VAL THR ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL ARG GLU SER LEU ALA GLU VAL GLY VAL THR SEQRES 3 B 112 GLY LEU THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR VAL SEQRES 5 B 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU VAL VAL VAL SEQRES 6 B 112 ASP ASP LYS VAL VAL GLU GLN ALA VAL ASP ALA ILE ILE SEQRES 7 B 112 LYS ALA ALA ARG THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE VAL GLN GLU VAL GLU GLN VAL ILE ARG ILE ARG THR SEQRES 9 B 112 GLY GLU THR GLY PRO ASP ALA VAL SEQRES 1 C 112 MET LYS GLN VAL THR ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 C 112 ASP GLU VAL ARG GLU SER LEU ALA GLU VAL GLY VAL THR SEQRES 3 C 112 GLY LEU THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 C 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR VAL SEQRES 5 C 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU VAL VAL VAL SEQRES 6 C 112 ASP ASP LYS VAL VAL GLU GLN ALA VAL ASP ALA ILE ILE SEQRES 7 C 112 LYS ALA ALA ARG THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 C 112 PHE VAL GLN GLU VAL GLU GLN VAL ILE ARG ILE ARG THR SEQRES 9 C 112 GLY GLU THR GLY PRO ASP ALA VAL SEQRES 1 D 112 MET LYS GLN VAL THR ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 D 112 ASP GLU VAL ARG GLU SER LEU ALA GLU VAL GLY VAL THR SEQRES 3 D 112 GLY LEU THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 D 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR VAL SEQRES 5 D 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU VAL VAL VAL SEQRES 6 D 112 ASP ASP LYS VAL VAL GLU GLN ALA VAL ASP ALA ILE ILE SEQRES 7 D 112 LYS ALA ALA ARG THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 D 112 PHE VAL GLN GLU VAL GLU GLN VAL ILE ARG ILE ARG THR SEQRES 9 D 112 GLY GLU THR GLY PRO ASP ALA VAL SEQRES 1 E 112 MET LYS GLN VAL THR ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 E 112 ASP GLU VAL ARG GLU SER LEU ALA GLU VAL GLY VAL THR SEQRES 3 E 112 GLY LEU THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 E 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR VAL SEQRES 5 E 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU VAL VAL VAL SEQRES 6 E 112 ASP ASP LYS VAL VAL GLU GLN ALA VAL ASP ALA ILE ILE SEQRES 7 E 112 LYS ALA ALA ARG THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 E 112 PHE VAL GLN GLU VAL GLU GLN VAL ILE ARG ILE ARG THR SEQRES 9 E 112 GLY GLU THR GLY PRO ASP ALA VAL SEQRES 1 F 112 MET LYS GLN VAL THR ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 F 112 ASP GLU VAL ARG GLU SER LEU ALA GLU VAL GLY VAL THR SEQRES 3 F 112 GLY LEU THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 F 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR VAL SEQRES 5 F 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU VAL VAL VAL SEQRES 6 F 112 ASP ASP LYS VAL VAL GLU GLN ALA VAL ASP ALA ILE ILE SEQRES 7 F 112 LYS ALA ALA ARG THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 F 112 PHE VAL GLN GLU VAL GLU GLN VAL ILE ARG ILE ARG THR SEQRES 9 F 112 GLY GLU THR GLY PRO ASP ALA VAL FORMUL 7 HOH *118(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 VAL A 23 1 12 HELIX 3 3 ASP A 66 LYS A 68 5 3 HELIX 4 4 VAL A 69 ARG A 82 1 14 HELIX 5 5 GLY A 108 ALA A 111 5 4 HELIX 6 6 LYS B 9 PHE B 11 5 3 HELIX 7 7 LYS B 12 VAL B 23 1 12 HELIX 8 8 ASP B 66 LYS B 68 5 3 HELIX 9 9 VAL B 69 ARG B 82 1 14 HELIX 10 10 LYS C 9 PHE C 11 5 3 HELIX 11 11 LYS C 12 VAL C 23 1 12 HELIX 12 12 ASP C 66 LYS C 68 5 3 HELIX 13 13 VAL C 69 ARG C 82 1 14 HELIX 14 14 GLY C 108 VAL C 112 5 5 HELIX 15 15 LYS D 9 PHE D 11 5 3 HELIX 16 16 LYS D 12 GLU D 22 1 11 HELIX 17 17 ASP D 66 LYS D 68 5 3 HELIX 18 18 VAL D 69 ARG D 82 1 14 HELIX 19 19 GLY D 108 VAL D 112 5 5 HELIX 20 20 LYS E 9 PHE E 11 5 3 HELIX 21 21 LYS E 12 VAL E 23 1 12 HELIX 22 22 ASP E 66 LYS E 68 5 3 HELIX 23 23 VAL E 69 ARG E 82 1 14 HELIX 24 24 LYS F 12 VAL F 23 1 12 HELIX 25 25 ASP F 66 LYS F 68 5 3 HELIX 26 26 VAL F 69 ARG F 82 1 14 HELIX 27 27 GLY F 108 VAL F 112 5 5 SHEET 1 A 5 THR A 29 PHE A 36 0 SHEET 2 A 5 PHE A 55 VAL A 65 -1 N LEU A 56 O GLY A 35 SHEET 3 A 5 LYS A 2 ILE A 8 -1 N LYS A 2 O VAL A 65 SHEET 4 A 5 LYS A 90 GLU A 95 -1 O LYS A 90 N ILE A 7 SHEET 5 A 5 GLN C 98 ARG C 101 -1 O GLN C 98 N VAL A 93 SHEET 1 B10 GLN A 98 ARG A 101 0 SHEET 2 B10 LYS B 90 GLU B 95 -1 N ILE B 91 O ILE A 100 SHEET 3 B10 LYS B 2 ILE B 8 -1 N GLN B 3 O GLN B 94 SHEET 4 B10 LEU B 56 VAL B 65 -1 O VAL B 59 N ILE B 8 SHEET 5 B10 LEU B 28 GLY B 35 -1 O THR B 29 N GLU B 62 SHEET 6 B10 THR C 29 PHE C 36 -1 N LYS C 34 O VAL B 30 SHEET 7 B10 LYS C 58 VAL C 65 -1 N LYS C 58 O VAL C 33 SHEET 8 B10 LYS C 2 ILE C 8 -1 O LYS C 2 N VAL C 65 SHEET 9 B10 LYS C 90 GLU C 95 -1 O LYS C 90 N ILE C 7 SHEET 10 B10 GLN B 98 ARG B 101 -1 O GLN B 98 N VAL C 93 SHEET 1 C 2 GLU B 44 TYR B 46 0 SHEET 2 C 2 ALA B 49 TYR B 51 -1 O ALA B 49 N TYR B 46 SHEET 1 D 5 THR D 29 GLY D 35 0 SHEET 2 D 5 LEU D 56 VAL D 65 -1 N LEU D 56 O GLY D 35 SHEET 3 D 5 LYS D 2 ILE D 8 -1 N LYS D 2 O VAL D 65 SHEET 4 D 5 LYS D 90 GLU D 95 -1 O LYS D 90 N ILE D 7 SHEET 5 D 5 GLN F 98 ARG F 101 -1 O GLN F 98 N VAL D 93 SHEET 1 E 5 GLN D 98 ARG D 101 0 SHEET 2 E 5 LYS E 90 GLU E 95 -1 N ILE E 91 O ILE D 100 SHEET 3 E 5 LYS E 2 ILE E 8 -1 N GLN E 3 O GLN E 94 SHEET 4 E 5 LYS E 58 VAL E 65 -1 O VAL E 59 N ILE E 8 SHEET 5 E 5 THR E 29 VAL E 33 -1 O THR E 29 N GLU E 62 SHEET 1 F 5 GLN E 98 ARG E 101 0 SHEET 2 F 5 GLY F 89 GLU F 95 -1 O ILE F 91 N ILE E 100 SHEET 3 F 5 LYS F 2 ILE F 8 -1 O GLN F 3 N GLN F 94 SHEET 4 F 5 LYS F 58 VAL F 65 -1 N VAL F 59 O ILE F 8 SHEET 5 F 5 THR F 29 VAL F 33 -1 O THR F 29 N GLU F 62 CRYST1 78.410 82.320 100.950 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009906 0.00000