HEADER    DNA                                     10-JAN-01   1HWV              
TITLE     MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA  
TITLE    2 ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3';                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: 5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3';                 
COMPND   7 CHAIN: B;                                                            
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: SYNTHESIZED FROM ABI-DNA SYNTHESIZER;                 
SOURCE   4 MOL_ID: 2;                                                           
SOURCE   5 SYNTHETIC: YES;                                                      
SOURCE   6 OTHER_DETAILS: SYNTHESIZED FROM ABI-DNA SYNTHESIZER                  
KEYWDS    CARCINOGEN-DNA ADDUCT, BENZO[C]PHENANTHRENE DNA ADDUCT, DNA           
EXPDTA    SOLUTION NMR                                                          
NUMMDL    7                                                                     
AUTHOR    D.J.PATEL,C.H.LIN,N.E.GEACINTOV,S.BROYDE,X.HUANG,A.KOLBANOVSKII,      
AUTHOR   2 B.E.HINGERTY,S.AMIN                                                  
REVDAT   4   22-MAY-24 1HWV    1       REMARK                                   
REVDAT   3   23-FEB-22 1HWV    1       REMARK LINK                              
REVDAT   2   24-FEB-09 1HWV    1       VERSN                                    
REVDAT   1   21-MAR-01 1HWV    0                                                
JRNL        AUTH   C.H.LIN,X.HUANG,A.KOLBANOVSKII,B.E.HINGERTY,S.AMIN,S.BROYDE, 
JRNL        AUTH 2 N.E.GEACINTOV,D.J.PATEL                                      
JRNL        TITL   MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS        
JRNL        TITL 2 DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC    
JRNL        TITL 3 ACTIVITY.                                                    
JRNL        REF    J.MOL.BIOL.                   V. 306  1059 2001              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   11237618                                                     
JRNL        DOI    10.1006/JMBI.2001.4425                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.1                                           
REMARK   3   AUTHORS     : BRUNGER, A. T.                                       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1HWV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-01.                  
REMARK 100 THE DEPOSITION ID IS D_1000012639.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 277                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 0.10                               
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : TRANS-ANTI-BPH (CARCINOGEN)        
REMARK 210                                   COVALENTLY BOUND TO 11MER DNA      
REMARK 210                                   DUPLEX                             
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; P-COSY; 1H-31P HSQC      
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 500 MHZ; 400 MHZ          
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR 6.1, FELIX FELIX2000          
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   SIMULATED ANNEALING, RELAXATION    
REMARK 210                                   MATRIX REFINEMENTS, ENERGE         
REMARK 210                                   MINIMIZATION                       
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 9                                  
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 7                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: D2O EXPERIMENTS WERE RUN AT 18 DEGREE C, H2O EXPERIMENTS     
REMARK 210  WERE RUN AT 4 DEGREE C                                              
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  1  DG A   6   N7     DG A   6   C8      0.052                       
REMARK 500  1  DC A  10   N1     DC A  10   C6     -0.039                       
REMARK 500  1  DG B  12   N7     DG B  12   C8      0.048                       
REMARK 500  1  DG B  13   C2'    DG B  13   C1'    -0.063                       
REMARK 500  1  DG B  13   N7     DG B  13   C8      0.044                       
REMARK 500  1  DG B  16   N7     DG B  16   C8      0.043                       
REMARK 500  1  DG B  18   N7     DG B  18   C8      0.040                       
REMARK 500  1  DG B  21   N7     DG B  21   C8      0.040                       
REMARK 500  1  DG B  22   N7     DG B  22   C8      0.045                       
REMARK 500  2  DG A   6   N7     DG A   6   C8      0.049                       
REMARK 500  2  DC A  10   N1     DC A  10   C6     -0.038                       
REMARK 500  2  DG B  12   N7     DG B  12   C8      0.051                       
REMARK 500  2  DG B  13   C2'    DG B  13   C1'    -0.063                       
REMARK 500  2  DG B  13   N7     DG B  13   C8      0.043                       
REMARK 500  2  DA B  15   N7     DA B  15   C8      0.042                       
REMARK 500  2  DG B  16   N7     DG B  16   C8      0.040                       
REMARK 500  2  DG B  18   N7     DG B  18   C8      0.043                       
REMARK 500  2  DG B  21   N7     DG B  21   C8      0.041                       
REMARK 500  2  DG B  22   N7     DG B  22   C8      0.044                       
REMARK 500  3  DG A   6   N7     DG A   6   C8      0.046                       
REMARK 500  3  DC A  10   N1     DC A  10   C6     -0.039                       
REMARK 500  3  DG B  12   N7     DG B  12   C8      0.049                       
REMARK 500  3  DG B  13   C2'    DG B  13   C1'    -0.068                       
REMARK 500  3  DG B  13   N7     DG B  13   C8      0.046                       
REMARK 500  3  DA B  15   N7     DA B  15   C8      0.043                       
REMARK 500  3  DG B  16   N7     DG B  16   C8      0.043                       
REMARK 500  3  DG B  18   N7     DG B  18   C8      0.042                       
REMARK 500  3  DG B  21   N7     DG B  21   C8      0.040                       
REMARK 500  3  DG B  21   C8     DG B  21   N9     -0.044                       
REMARK 500  3  DG B  22   N7     DG B  22   C8      0.044                       
REMARK 500  4  DG A   6   N7     DG A   6   C8      0.050                       
REMARK 500  4  DC A  10   N1     DC A  10   C6     -0.039                       
REMARK 500  4  DG B  12   N7     DG B  12   C8      0.049                       
REMARK 500  4  DG B  13   C2'    DG B  13   C1'    -0.061                       
REMARK 500  4  DG B  13   N7     DG B  13   C8      0.047                       
REMARK 500  4  DG B  16   N7     DG B  16   C8      0.043                       
REMARK 500  4  DG B  18   N7     DG B  18   C8      0.041                       
REMARK 500  4  DG B  21   N7     DG B  21   C8      0.043                       
REMARK 500  4  DG B  22   N7     DG B  22   C8      0.045                       
REMARK 500  5  DG A   6   N7     DG A   6   C8      0.049                       
REMARK 500  5  DG B  12   N7     DG B  12   C8      0.046                       
REMARK 500  5  DG B  13   C2'    DG B  13   C1'    -0.065                       
REMARK 500  5  DG B  13   N7     DG B  13   C8      0.048                       
REMARK 500  5  DG B  16   N7     DG B  16   C8      0.043                       
REMARK 500  5  DG B  18   C5     DG B  18   N7     -0.037                       
REMARK 500  5  DG B  18   N7     DG B  18   C8      0.040                       
REMARK 500  5  DG B  21   N7     DG B  21   C8      0.040                       
REMARK 500  5  DG B  21   C8     DG B  21   N9     -0.047                       
REMARK 500  5  DG B  22   N7     DG B  22   C8      0.043                       
REMARK 500  6  DT A   4   C5     DT A   4   C7      0.038                       
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      70 BOND DEVIATIONS.                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1  DC A   1   O4' -  C1' -  N1  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  1  DC A   2   N1  -  C2  -  O2  ANGL. DEV. =   3.9 DEGREES          
REMARK 500  1  DC A   2   C3' -  O3' -  P   ANGL. DEV. =   7.9 DEGREES          
REMARK 500  1  DA A   3   O4' -  C1' -  N9  ANGL. DEV. =   1.9 DEGREES          
REMARK 500  1  DA A   3   C3' -  O3' -  P   ANGL. DEV. =   7.8 DEGREES          
REMARK 500  1  DT A   4   C6  -  C5  -  C7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  1  DC A   5   N1  -  C2  -  O2  ANGL. DEV. =   4.2 DEGREES          
REMARK 500  1  DC A   5   C3' -  O3' -  P   ANGL. DEV. =   9.9 DEGREES          
REMARK 500  1  DC A   7   O4' -  C1' -  C2' ANGL. DEV. =  -7.3 DEGREES          
REMARK 500  1  DC A   7   O4' -  C1' -  N1  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  1  DC A   7   N1  -  C2  -  O2  ANGL. DEV. =   4.7 DEGREES          
REMARK 500  1  DC A   7   C3' -  O3' -  P   ANGL. DEV. =   8.9 DEGREES          
REMARK 500  1  DT A   8   O4' -  C4' -  C3' ANGL. DEV. =   5.5 DEGREES          
REMARK 500  1  DT A   8   O4' -  C1' -  C2' ANGL. DEV. =  -4.8 DEGREES          
REMARK 500  1  DT A   8   C6  -  C5  -  C7  ANGL. DEV. =  -4.4 DEGREES          
REMARK 500  1  DA A   9   O4' -  C4' -  C3' ANGL. DEV. =   5.2 DEGREES          
REMARK 500  1  DA A   9   C4' -  C3' -  C2' ANGL. DEV. =  -5.4 DEGREES          
REMARK 500  1  DC A  10   C1' -  O4' -  C4' ANGL. DEV. =  -6.5 DEGREES          
REMARK 500  1  DC A  10   O4' -  C1' -  C2' ANGL. DEV. =  -6.2 DEGREES          
REMARK 500  1  DC A  10   O4' -  C1' -  N1  ANGL. DEV. =   2.7 DEGREES          
REMARK 500  1  DC A  10   C3' -  O3' -  P   ANGL. DEV. =   8.7 DEGREES          
REMARK 500  1  DC A  11   C4' -  C3' -  C2' ANGL. DEV. =  -4.8 DEGREES          
REMARK 500  1  DC A  11   O4' -  C1' -  N1  ANGL. DEV. =   6.4 DEGREES          
REMARK 500  1  DG B  12   O4' -  C1' -  N9  ANGL. DEV. =   6.8 DEGREES          
REMARK 500  1  DG B  12   C3' -  O3' -  P   ANGL. DEV. =  10.3 DEGREES          
REMARK 500  1  DT B  14   O4' -  C4' -  C3' ANGL. DEV. =   4.6 DEGREES          
REMARK 500  1  DT B  14   C6  -  C5  -  C7  ANGL. DEV. =  -5.4 DEGREES          
REMARK 500  1  DA B  15   O4' -  C1' -  N9  ANGL. DEV. =   2.5 DEGREES          
REMARK 500  1  DA B  15   C3' -  O3' -  P   ANGL. DEV. =   8.1 DEGREES          
REMARK 500  1  DG B  16   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  1  DC B  17   O4' -  C1' -  C2' ANGL. DEV. =  -6.9 DEGREES          
REMARK 500  1  DC B  17   O4' -  C1' -  N1  ANGL. DEV. =   5.2 DEGREES          
REMARK 500  1  DG B  18   O4' -  C1' -  N9  ANGL. DEV. =   5.0 DEGREES          
REMARK 500  1  DG B  18   C8  -  N9  -  C4  ANGL. DEV. =  -2.5 DEGREES          
REMARK 500  1  DG B  18   C3' -  O3' -  P   ANGL. DEV. =   8.1 DEGREES          
REMARK 500  1  DT B  20   O4' -  C1' -  C2' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500  1  DT B  20   O4' -  C1' -  N1  ANGL. DEV. =  -5.4 DEGREES          
REMARK 500  1  DT B  20   C6  -  C5  -  C7  ANGL. DEV. =  -5.8 DEGREES          
REMARK 500  1  DT B  20   C3' -  O3' -  P   ANGL. DEV. =   8.0 DEGREES          
REMARK 500  1  DG B  21   O4' -  C1' -  N9  ANGL. DEV. =   6.3 DEGREES          
REMARK 500  2  DC A   2   N1  -  C2  -  O2  ANGL. DEV. =   4.0 DEGREES          
REMARK 500  2  DA A   3   O4' -  C1' -  N9  ANGL. DEV. =   6.1 DEGREES          
REMARK 500  2  DT A   4   C5' -  C4' -  O4' ANGL. DEV. =   8.1 DEGREES          
REMARK 500  2  DT A   4   C6  -  C5  -  C7  ANGL. DEV. =  -4.6 DEGREES          
REMARK 500  2  DT A   4   C3' -  O3' -  P   ANGL. DEV. =   8.3 DEGREES          
REMARK 500  2  DC A   5   N1  -  C2  -  O2  ANGL. DEV. =   4.0 DEGREES          
REMARK 500  2  DC A   5   C3' -  O3' -  P   ANGL. DEV. =  10.4 DEGREES          
REMARK 500  2  DC A   7   O4' -  C1' -  C2' ANGL. DEV. =  -5.3 DEGREES          
REMARK 500  2  DC A   7   N1  -  C2  -  O2  ANGL. DEV. =   4.4 DEGREES          
REMARK 500  2  DT A   8   O4' -  C4' -  C3' ANGL. DEV. =   5.6 DEGREES          
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     275 ANGLE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPI A 25                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1HX4   RELATED DB: PDB                                   
REMARK 900 1HX4 IS THE SAME DNA SEQUENCE WITH 1R-TRANS-ANTI-BENZO[C]            
REMARK 900 PHENANTHRENE                                                         
DBREF  1HWV A    1    11  PDB    1HWV     1HWV             1     11             
DBREF  1HWV B   12    22  PDB    1HWV     1HWV            12     22             
SEQRES   1 A   11   DC  DC  DA  DT  DC  DG  DC  DT  DA  DC  DC                  
SEQRES   1 B   11   DG  DG  DT  DA  DG  DC  DG  DA  DT  DG  DG                  
HET    BPI  A  25      36                                                       
HETNAM     BPI (1S)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-              
HETNAM   2 BPI  TRIOL                                                           
HETSYN     BPI 1S-TRANS-ANTI-BENZO[C]PHENANTHRENE                               
FORMUL   3  BPI    C18 H16 O3                                                   
LINK         N2   DG A   6                 C1  BPI A  25     1555   1555  1.34  
SITE     1 AC1  5  DC A   5   DG A   6   DC A   7   DC B  17                    
SITE     2 AC1  5  DG B  18                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1