data_1HX4 # _entry.id 1HX4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HX4 pdb_00001hx4 10.2210/pdb1hx4/pdb RCSB RCSB012648 ? ? WWPDB D_1000012648 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-03-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HX4 _pdbx_database_status.recvd_initial_deposition_date 2001-01-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1HWV _pdbx_database_related.details '1S-trans-anti-(BPH)-N2-dG adduct, carcinogen-DNA adduct' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Patel, D.J.' 1 'Lin, C.H.' 2 'Geacintov, N.E.' 3 'Broyde, S.' 4 'Huang, X.' 5 'Kolbanovskii, A.' 6 'Hingerty, B.E.' 7 'Amin, S.' 8 # _citation.id primary _citation.title 'Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 306 _citation.page_first 1059 _citation.page_last 1080 _citation.year 2001 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11237618 _citation.pdbx_database_id_DOI 10.1006/jmbi.2001.4425 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, C.H.' 1 ? primary 'Huang, X.' 2 ? primary 'Kolbanovskii, A.' 3 ? primary 'Hingerty, B.E.' 4 ? primary 'Amin, S.' 5 ? primary 'Broyde, S.' 6 ? primary 'Geacintov, N.E.' 7 ? primary 'Patel, D.J.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3'" 3254.138 1 ? ? ? ? 2 polymer syn "5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3'" 3454.258 1 ? ? ? ? 3 non-polymer syn '(1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL' 280.318 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC)' CCATCGCTACC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DG)(DC)(DG)(DA)(DT)(DG)(DG)' GGTAGCGATGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '(1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL' _pdbx_entity_nonpoly.comp_id BPJ # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DC n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Synthesized from ABI-DNA Synthesizer' 2 1 sample ? ? ? ? ? 'Synthesized from ABI-DNA Synthesizer' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BPJ non-polymer . '(1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL' '1R-TRANS-ANTI-BENZO[C]PHENANTHRENE' 'C18 H16 O3' 280.318 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DC 11 11 11 DC C A . n B 2 1 DG 1 12 12 DG G B . n B 2 2 DG 2 13 13 DG G B . n B 2 3 DT 3 14 14 DT T B . n B 2 4 DA 4 15 15 DA A B . n B 2 5 DG 5 16 16 DG G B . n B 2 6 DC 6 17 17 DC C B . n B 2 7 DG 7 18 18 DG G B . n B 2 8 DA 8 19 19 DA A B . n B 2 9 DT 9 20 20 DT T B . n B 2 10 DG 10 21 21 DG G B . n B 2 11 DG 11 22 22 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BPJ _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 25 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id BPJ _pdbx_nonpoly_scheme.auth_mon_id BPH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.entry_id 1HX4 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HX4 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1HX4 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1HX4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1HX4 _struct.title 'MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HX4 _struct_keywords.pdbx_keywords DNA _struct_keywords.text '1R-trans-anti-BPh-N2-G adduct, carcinogen-dna adduct, benzo[c]phenanthrene dna adduct, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1HX4 1HX4 ? ? ? 2 2 PDB 1HX4 1HX4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HX4 A 1 ? 11 ? 1HX4 1 ? 11 ? 1 11 2 2 1HX4 B 1 ? 11 ? 1HX4 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 6 N2 ? ? ? 1_555 C BPJ . C1 ? ? A DG 6 A BPJ 25 1_555 ? ? ? ? ? ? ? 1.343 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 3 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 3 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 4 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 4 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 6 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 6 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 6 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BPJ _struct_site.pdbx_auth_seq_id 25 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE BPJ A 25' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 6 DC A 7 ? DC A 7 . ? 1_555 ? 3 AC1 6 DG B 5 ? DG B 16 . ? 1_555 ? 4 AC1 6 DC B 6 ? DC B 17 . ? 1_555 ? 5 AC1 6 DG B 7 ? DG B 18 . ? 1_555 ? 6 AC1 6 DA B 8 ? DA B 19 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 N2 A DG 6 ? ? C13 A BPJ 25 ? ? 2.18 2 5 N2 A DG 6 ? ? C13 A BPJ 25 ? ? 2.15 3 6 N2 A DG 6 ? ? C13 A BPJ 25 ? ? 2.19 4 8 N2 A DG 6 ? ? C13 A BPJ 25 ? ? 2.18 5 9 N2 A DG 6 ? ? C13 A BPJ 25 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.329 1.367 -0.038 0.006 N 2 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.350 1.305 0.045 0.006 N 3 1 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.457 1.516 -0.059 0.008 N 4 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.346 1.305 0.041 0.006 N 5 1 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.355 1.305 0.050 0.006 N 6 1 N7 B DA 15 ? ? C8 B DA 15 ? ? 1.354 1.311 0.043 0.007 N 7 1 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.350 1.305 0.045 0.006 N 8 1 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.345 1.305 0.040 0.006 N 9 1 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.350 1.305 0.045 0.006 N 10 1 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.350 1.305 0.045 0.006 N 11 2 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.330 1.367 -0.037 0.006 N 12 2 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.351 1.305 0.046 0.006 N 13 2 C6 A DT 8 ? ? N1 A DT 8 ? ? 1.335 1.378 -0.043 0.007 N 14 2 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.459 1.516 -0.057 0.008 N 15 2 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.351 1.305 0.046 0.006 N 16 2 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.467 1.516 -0.049 0.008 N 17 2 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.351 1.305 0.046 0.006 N 18 2 C6 B DT 14 ? ? N1 B DT 14 ? ? 1.335 1.378 -0.043 0.007 N 19 2 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.348 1.305 0.043 0.006 N 20 2 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.348 1.305 0.043 0.006 N 21 2 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.353 1.305 0.048 0.006 N 22 2 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.351 1.305 0.046 0.006 N 23 3 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.329 1.367 -0.038 0.006 N 24 3 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.352 1.305 0.047 0.006 N 25 3 C6 A DT 8 ? ? N1 A DT 8 ? ? 1.336 1.378 -0.042 0.007 N 26 3 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.457 1.516 -0.059 0.008 N 27 3 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.352 1.305 0.047 0.006 N 28 3 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.354 1.305 0.049 0.006 N 29 3 C6 B DT 14 ? ? N1 B DT 14 ? ? 1.335 1.378 -0.043 0.007 N 30 3 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.347 1.305 0.042 0.006 N 31 3 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.347 1.305 0.042 0.006 N 32 3 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.353 1.305 0.048 0.006 N 33 3 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.347 1.305 0.042 0.006 N 34 4 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.328 1.367 -0.039 0.006 N 35 4 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.353 1.305 0.048 0.006 N 36 4 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.459 1.516 -0.057 0.008 N 37 4 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.353 1.305 0.048 0.006 N 38 4 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.356 1.305 0.051 0.006 N 39 4 C6 B DT 14 ? ? N1 B DT 14 ? ? 1.335 1.378 -0.043 0.007 N 40 4 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.347 1.305 0.042 0.006 N 41 4 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.346 1.305 0.041 0.006 N 42 4 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.351 1.305 0.046 0.006 N 43 4 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.350 1.305 0.045 0.006 N 44 5 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.329 1.367 -0.038 0.006 N 45 5 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.352 1.305 0.047 0.006 N 46 5 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.457 1.516 -0.059 0.008 N 47 5 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.349 1.305 0.044 0.006 N 48 5 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.452 1.516 -0.064 0.008 N 49 5 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.354 1.305 0.049 0.006 N 50 5 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.346 1.305 0.041 0.006 N 51 5 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.347 1.305 0.042 0.006 N 52 5 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.350 1.305 0.045 0.006 N 53 5 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.350 1.305 0.045 0.006 N 54 6 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.353 1.305 0.048 0.006 N 55 6 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.533 1.496 0.037 0.006 N 56 6 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.460 1.516 -0.056 0.008 N 57 6 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.351 1.305 0.046 0.006 N 58 6 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.354 1.305 0.049 0.006 N 59 6 C6 B DT 14 ? ? N1 B DT 14 ? ? 1.333 1.378 -0.045 0.007 N 60 6 N7 B DA 15 ? ? C8 B DA 15 ? ? 1.353 1.311 0.042 0.007 N 61 6 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.348 1.305 0.043 0.006 N 62 6 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.350 1.305 0.045 0.006 N 63 6 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.351 1.305 0.046 0.006 N 64 7 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.329 1.367 -0.038 0.006 N 65 7 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.351 1.305 0.046 0.006 N 66 7 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.457 1.516 -0.059 0.008 N 67 7 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.347 1.305 0.042 0.006 N 68 7 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.466 1.516 -0.050 0.008 N 69 7 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.354 1.305 0.049 0.006 N 70 7 N7 B DA 15 ? ? C8 B DA 15 ? ? 1.355 1.311 0.044 0.007 N 71 7 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.348 1.305 0.043 0.006 N 72 7 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.345 1.305 0.040 0.006 N 73 7 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.350 1.305 0.045 0.006 N 74 7 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.349 1.305 0.044 0.006 N 75 8 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.328 1.367 -0.039 0.006 N 76 8 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.351 1.305 0.046 0.006 N 77 8 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.459 1.516 -0.057 0.008 N 78 8 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.350 1.305 0.045 0.006 N 79 8 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.460 1.516 -0.056 0.008 N 80 8 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.351 1.305 0.046 0.006 N 81 8 N7 B DA 15 ? ? C8 B DA 15 ? ? 1.354 1.311 0.043 0.007 N 82 8 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.346 1.305 0.041 0.006 N 83 8 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.346 1.305 0.041 0.006 N 84 8 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.352 1.305 0.047 0.006 N 85 8 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.347 1.305 0.042 0.006 N 86 9 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.330 1.367 -0.037 0.006 N 87 9 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.353 1.305 0.048 0.006 N 88 9 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 1.458 1.516 -0.058 0.008 N 89 9 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.350 1.305 0.045 0.006 N 90 9 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.457 1.516 -0.059 0.008 N 91 9 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.351 1.305 0.046 0.006 N 92 9 N7 B DG 16 ? ? C8 B DG 16 ? ? 1.345 1.305 0.040 0.006 N 93 9 N7 B DG 18 ? ? C8 B DG 18 ? ? 1.344 1.305 0.039 0.006 N 94 9 N7 B DG 21 ? ? C8 B DG 21 ? ? 1.350 1.305 0.045 0.006 N 95 9 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.349 1.305 0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.86 118.90 3.96 0.60 N 2 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.23 105.90 -5.67 0.80 N 3 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.10 122.90 -5.80 0.60 N 4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.86 105.90 -6.04 0.80 N 5 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.73 118.90 3.83 0.60 N 6 1 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.76 110.10 -7.34 1.00 N 7 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.94 108.30 4.64 0.30 N 8 1 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 110.38 106.00 4.38 0.60 N 9 1 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 124.18 114.30 9.88 1.40 N 10 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 112.33 108.30 4.03 0.30 N 11 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 124.88 119.00 5.88 0.60 N 12 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.61 122.90 -7.29 0.60 N 13 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 128.01 119.70 8.31 1.20 Y 14 1 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.68 118.90 3.78 0.60 N 15 1 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.81 118.90 3.91 0.60 N 16 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.54 105.90 -5.36 0.80 N 17 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.71 108.30 3.41 0.30 N 18 1 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 96.91 102.20 -5.29 0.70 N 19 1 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DT 14 ? ? 127.81 119.70 8.11 1.20 Y 20 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 100.19 105.90 -5.71 0.80 N 21 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.92 108.30 2.62 0.30 N 22 1 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.49 119.00 4.49 0.60 N 23 1 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 116.12 122.90 -6.78 0.60 N 24 1 "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? P B DA 15 ? ? 128.61 119.70 8.91 1.20 Y 25 1 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.96 110.10 -7.14 1.00 N 26 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.23 108.30 1.93 0.30 N 27 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.42 108.30 3.12 0.30 N 28 1 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.83 118.90 3.93 0.60 N 29 1 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.37 119.70 7.67 1.20 Y 30 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.36 105.90 -6.54 0.80 N 31 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.53 105.90 -5.37 0.80 N 32 1 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 123.01 119.00 4.01 0.60 N 33 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.27 122.90 -6.63 0.60 N 34 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 100.43 105.90 -5.47 0.80 N 35 2 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.66 118.90 3.76 0.60 N 36 2 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DA 3 ? ? 127.23 119.70 7.53 1.20 Y 37 2 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.23 105.90 -5.67 0.80 N 38 2 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.94 108.30 3.64 0.30 N 39 2 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "O4'" A DT 4 ? ? 116.61 109.80 6.81 1.10 N 40 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 99.26 105.90 -6.64 0.80 N 41 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 116.66 122.90 -6.24 0.60 N 42 2 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 101.57 110.10 -8.53 1.00 N 43 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 101.07 105.90 -4.83 0.80 N 44 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.82 108.30 6.52 0.30 N 45 2 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 110.38 106.00 4.38 0.60 N 46 2 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 124.04 114.30 9.74 1.40 N 47 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 112.60 108.30 4.30 0.30 N 48 2 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 125.15 119.00 6.15 0.60 N 49 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.35 122.90 -7.55 0.60 N 50 2 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 127.78 119.70 8.08 1.20 Y 51 2 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.80 118.90 3.90 0.60 N 52 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.21 105.90 -5.69 0.80 N 53 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 116.94 108.30 8.64 0.30 N 54 2 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 128.73 119.70 9.03 1.20 Y 55 2 "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.80 102.20 -4.40 0.70 N 56 2 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 100.33 105.90 -5.57 0.80 N 57 2 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 111.50 108.30 3.20 0.30 N 58 2 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 124.16 119.00 5.16 0.60 N 59 2 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.34 122.90 -7.56 0.60 N 60 2 "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? P B DA 15 ? ? 128.90 119.70 9.20 1.20 Y 61 2 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.02 110.10 -7.08 1.00 N 62 2 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.35 108.30 3.05 0.30 N 63 2 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.95 118.90 4.05 0.60 N 64 2 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.34 119.70 7.64 1.20 Y 65 2 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.60 105.90 -6.30 0.80 N 66 2 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 122.85 119.00 3.85 0.60 N 67 2 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.71 122.90 -6.19 0.60 N 68 2 "C1'" B DG 21 ? ? "O4'" B DG 21 ? ? "C4'" B DG 21 ? ? 103.68 110.10 -6.42 1.00 N 69 2 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 126.99 119.70 7.29 1.20 Y 70 3 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.87 118.90 3.97 0.60 N 71 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 101.02 105.90 -4.88 0.80 N 72 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.25 122.90 -5.65 0.60 N 73 3 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.78 118.90 3.88 0.60 N 74 3 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 101.98 110.10 -8.12 1.00 N 75 3 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 111.27 106.00 5.27 0.60 N 76 3 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 110.36 102.50 7.86 1.20 N 77 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 114.06 108.30 5.76 0.30 N 78 3 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 123.16 118.90 4.26 0.60 N 79 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 101.08 105.90 -4.82 0.80 N 80 3 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 124.23 119.00 5.23 0.60 N 81 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.91 122.90 -6.99 0.60 N 82 3 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 128.59 119.70 8.89 1.20 Y 83 3 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.87 118.90 3.97 0.60 N 84 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.91 105.90 -4.99 0.80 N 85 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 114.31 108.30 6.01 0.30 N 86 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 99.76 105.90 -6.14 0.80 N 87 3 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 117.10 109.80 7.30 1.10 N 88 3 "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.59 102.20 -4.61 0.70 N 89 3 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.02 105.90 -8.88 0.80 N 90 3 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 112.28 108.30 3.98 0.30 N 91 3 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.71 119.00 4.71 0.60 N 92 3 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.51 122.90 -7.39 0.60 N 93 3 "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? P B DA 15 ? ? 128.80 119.70 9.10 1.20 Y 94 3 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 103.49 108.00 -4.51 0.70 N 95 3 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.97 110.10 -6.13 1.00 N 96 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.62 108.30 2.32 0.30 N 97 3 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.93 108.30 3.63 0.30 N 98 3 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.67 118.90 3.77 0.60 N 99 3 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "O4'" B DG 18 ? ? 116.68 109.80 6.88 1.10 N 100 3 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 98.69 105.90 -7.21 0.80 N 101 3 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.36 105.90 -5.54 0.80 N 102 3 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 123.01 119.00 4.01 0.60 N 103 3 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.48 122.90 -6.42 0.60 N 104 3 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 100.82 105.90 -5.08 0.80 N 105 3 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 127.01 119.70 7.31 1.20 Y 106 4 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.86 118.90 3.96 0.60 N 107 4 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.70 105.90 -5.20 0.80 N 108 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.26 122.90 -5.64 0.60 N 109 4 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.86 118.90 3.96 0.60 N 110 4 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.56 110.10 -7.54 1.00 N 111 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.84 108.30 4.54 0.30 N 112 4 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 111.71 106.00 5.71 0.60 N 113 4 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 110.76 102.50 8.26 1.20 N 114 4 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 124.99 114.30 10.69 1.40 N 115 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 113.56 108.30 5.26 0.30 N 116 4 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.98 118.90 4.08 0.60 N 117 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 101.07 105.90 -4.83 0.80 N 118 4 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 124.67 119.00 5.67 0.60 N 119 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.41 122.90 -7.49 0.60 N 120 4 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 128.09 119.70 8.39 1.20 Y 121 4 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.72 118.90 3.82 0.60 N 122 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.98 105.90 -4.92 0.80 N 123 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.98 108.30 5.68 0.30 N 124 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 99.71 105.90 -6.19 0.80 N 125 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.23 108.30 1.93 0.30 N 126 4 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 117.14 109.80 7.34 1.10 N 127 4 "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.46 102.20 -4.74 0.70 N 128 4 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.26 105.90 -8.64 0.80 N 129 4 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 112.03 108.30 3.73 0.30 N 130 4 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.86 119.00 4.86 0.60 N 131 4 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.37 122.90 -7.53 0.60 N 132 4 "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? P B DA 15 ? ? 128.87 119.70 9.17 1.20 Y 133 4 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.43 110.10 -6.67 1.00 N 134 4 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.12 108.30 2.82 0.30 N 135 4 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.69 118.90 3.79 0.60 N 136 4 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.88 119.70 8.18 1.20 Y 137 4 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 100.04 105.90 -5.86 0.80 N 138 4 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.42 105.90 -5.48 0.80 N 139 4 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 122.85 119.00 3.85 0.60 N 140 4 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.33 122.90 -6.57 0.60 N 141 4 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.12 108.30 1.82 0.30 N 142 4 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 128.25 119.70 8.55 1.20 Y 143 5 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.77 118.90 3.87 0.60 N 144 5 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.52 105.90 -5.38 0.80 N 145 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.28 108.30 1.98 0.30 N 146 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.29 122.90 -5.61 0.60 N 147 5 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? "O4'" A DC 5 ? ? 118.03 109.80 8.23 1.10 N 148 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.04 105.90 -6.86 0.80 N 149 5 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.26 118.90 4.36 0.60 N 150 5 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 101.99 110.10 -8.11 1.00 N 151 5 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 107.87 105.40 2.47 0.40 N 152 5 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 110.91 106.00 4.91 0.60 N 153 5 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 109.80 102.50 7.30 1.20 N 154 5 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 123.24 114.30 8.94 1.40 N 155 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 113.15 108.30 4.85 0.30 N 156 5 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 123.20 118.90 4.30 0.60 N 157 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 101.07 105.90 -4.83 0.80 N 158 5 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 124.66 119.00 5.66 0.60 N 159 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.50 122.90 -7.40 0.60 N 160 5 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 128.18 119.70 8.48 1.20 Y 161 5 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.63 118.90 3.73 0.60 N 162 5 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.63 118.90 3.73 0.60 N 163 5 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 97.18 102.20 -5.02 0.70 N 164 5 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.51 108.30 2.21 0.30 N 165 5 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 97.30 102.20 -4.90 0.70 N 166 5 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 116.85 109.80 7.05 1.10 N 167 5 "C1'" B DT 14 ? ? "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? 103.76 110.10 -6.34 1.00 N 168 5 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 99.67 105.90 -6.23 0.80 N 169 5 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.88 108.30 2.58 0.30 N 170 5 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.33 119.00 4.33 0.60 N 171 5 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.83 122.90 -7.07 0.60 N 172 5 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.97 110.10 -6.13 1.00 N 173 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.01 108.30 4.71 0.30 N 174 5 "C1'" B DC 17 ? ? "O4'" B DC 17 ? ? "C4'" B DC 17 ? ? 103.72 110.10 -6.38 1.00 N 175 5 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.60 108.30 3.30 0.30 N 176 5 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 123.00 118.90 4.10 0.60 N 177 5 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.28 105.90 -6.62 0.80 N 178 5 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.56 105.90 -5.34 0.80 N 179 5 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 123.10 119.00 4.10 0.60 N 180 5 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.44 122.90 -6.46 0.60 N 181 5 "C1'" B DG 21 ? ? "O4'" B DG 21 ? ? "C4'" B DG 21 ? ? 103.92 110.10 -6.18 1.00 N 182 5 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 101.03 105.90 -4.87 0.80 N 183 5 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 126.97 119.70 7.27 1.20 Y 184 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.05 105.90 -5.85 0.80 N 185 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.08 108.30 2.78 0.30 N 186 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 116.80 122.90 -6.10 0.60 N 187 6 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.91 118.90 4.01 0.60 N 188 6 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.52 110.10 -7.58 1.00 N 189 6 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 96.67 102.20 -5.53 0.70 N 190 6 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.83 118.90 3.93 0.60 N 191 6 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 125.60 119.00 6.60 0.60 N 192 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 114.69 122.90 -8.21 0.60 N 193 6 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 127.92 119.70 8.22 1.20 Y 194 6 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.58 118.90 3.68 0.60 N 195 6 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 101.06 105.90 -4.84 0.80 N 196 6 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.76 108.30 5.46 0.30 N 197 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 100.05 105.90 -5.85 0.80 N 198 6 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 117.42 109.80 7.62 1.10 N 199 6 "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.19 102.20 -5.01 0.70 N 200 6 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 96.71 105.90 -9.19 0.80 N 201 6 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 111.62 108.30 3.32 0.30 N 202 6 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 124.16 119.00 5.16 0.60 N 203 6 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.07 122.90 -7.83 0.60 N 204 6 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 99.46 105.90 -6.44 0.80 N 205 6 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.57 110.10 -6.53 1.00 N 206 6 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.30 108.30 2.00 0.30 N 207 6 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 112.42 108.30 4.12 0.30 N 208 6 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.63 118.90 3.73 0.60 N 209 6 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.59 119.70 7.89 1.20 Y 210 6 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 100.38 105.90 -5.52 0.80 N 211 6 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 123.25 119.00 4.25 0.60 N 212 6 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.48 122.90 -6.42 0.60 N 213 7 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.73 118.90 3.83 0.60 N 214 7 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.17 105.90 -5.73 0.80 N 215 7 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.65 108.30 2.35 0.30 N 216 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 116.96 122.90 -5.94 0.60 N 217 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.91 105.90 -5.99 0.80 N 218 7 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.72 118.90 3.82 0.60 N 219 7 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.55 110.10 -7.55 1.00 N 220 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 114.17 108.30 5.87 0.30 N 221 7 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 110.63 106.00 4.63 0.60 N 222 7 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 125.12 114.30 10.82 1.40 N 223 7 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.87 108.30 3.57 0.30 N 224 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.93 105.90 -4.97 0.80 N 225 7 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 125.26 119.00 6.26 0.60 N 226 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 115.32 122.90 -7.58 0.60 N 227 7 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 127.69 119.70 7.99 1.20 Y 228 7 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.78 118.90 3.88 0.60 N 229 7 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.54 105.90 -5.36 0.80 N 230 7 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 114.04 108.30 5.74 0.30 N 231 7 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DT 14 ? ? 127.78 119.70 8.08 1.20 Y 232 7 "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? 109.62 106.00 3.62 0.60 N 233 7 "C1'" B DT 14 ? ? "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? 104.02 110.10 -6.08 1.00 N 234 7 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.65 119.00 4.65 0.60 N 235 7 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.85 122.90 -7.05 0.60 N 236 7 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.85 110.10 -7.25 1.00 N 237 7 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.78 108.30 3.48 0.30 N 238 7 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.86 118.90 3.96 0.60 N 239 7 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.09 119.70 7.39 1.20 Y 240 7 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.46 105.90 -6.44 0.80 N 241 7 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.51 105.90 -5.39 0.80 N 242 7 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 123.15 119.00 4.15 0.60 N 243 7 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.11 122.90 -6.79 0.60 N 244 7 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 100.48 105.90 -5.42 0.80 N 245 8 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.73 118.90 3.83 0.60 N 246 8 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.83 105.90 -5.07 0.80 N 247 8 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.50 108.30 2.20 0.30 N 248 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 116.86 122.90 -6.04 0.60 N 249 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.51 105.90 -6.39 0.80 N 250 8 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.74 118.90 3.84 0.60 N 251 8 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.73 110.10 -7.37 1.00 N 252 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.21 108.30 1.91 0.30 N 253 8 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 97.35 102.20 -4.85 0.70 N 254 8 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.98 118.90 4.08 0.60 N 255 8 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 103.26 110.10 -6.84 1.00 N 256 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.59 108.30 3.29 0.30 N 257 8 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.80 122.90 -5.10 0.60 N 258 8 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 128.30 119.70 8.60 1.20 Y 259 8 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.53 118.90 3.63 0.60 N 260 8 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 97.89 102.20 -4.31 0.70 N 261 8 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.15 105.90 -5.75 0.80 N 262 8 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 115.00 108.30 6.70 0.30 N 263 8 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 128.36 119.70 8.66 1.20 Y 264 8 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 116.49 109.80 6.69 1.10 N 265 8 "C1'" B DT 14 ? ? "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? 103.67 110.10 -6.43 1.00 N 266 8 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 99.65 105.90 -6.25 0.80 N 267 8 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.88 108.30 2.58 0.30 N 268 8 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.49 119.00 4.49 0.60 N 269 8 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.54 122.90 -7.36 0.60 N 270 8 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.47 110.10 -6.63 1.00 N 271 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.77 108.30 2.47 0.30 N 272 8 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 112.30 108.30 4.00 0.30 N 273 8 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.64 118.90 3.74 0.60 N 274 8 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.52 119.70 7.82 1.20 Y 275 8 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.38 105.90 -6.52 0.80 N 276 8 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.78 105.90 -5.12 0.80 N 277 8 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 122.70 119.00 3.70 0.60 N 278 8 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.57 122.90 -6.33 0.60 N 279 8 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 100.59 105.90 -5.31 0.80 N 280 9 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.94 118.90 4.04 0.60 N 281 9 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.32 105.90 -5.58 0.80 N 282 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.01 122.90 -5.89 0.60 N 283 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.39 105.90 -6.51 0.80 N 284 9 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.01 118.90 4.11 0.60 N 285 9 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 103.22 110.10 -6.88 1.00 N 286 9 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 96.19 102.20 -6.01 0.70 N 287 9 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.92 118.90 4.02 0.60 N 288 9 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 125.53 119.00 6.53 0.60 N 289 9 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 114.90 122.90 -8.00 0.60 N 290 9 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DA 9 ? ? 127.97 119.70 8.27 1.20 Y 291 9 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.57 118.90 3.67 0.60 N 292 9 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.54 118.90 3.64 0.60 N 293 9 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 97.95 102.20 -4.25 0.70 N 294 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 99.98 105.90 -5.92 0.80 N 295 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 115.04 108.30 6.74 0.30 N 296 9 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DG 13 ? ? 128.64 119.70 8.94 1.20 Y 297 9 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 117.48 109.80 7.68 1.10 N 298 9 "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.81 102.20 -4.39 0.70 N 299 9 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 97.06 105.90 -8.84 0.80 N 300 9 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 112.44 108.30 4.14 0.30 N 301 9 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 124.10 119.00 5.10 0.60 N 302 9 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.24 122.90 -7.66 0.60 N 303 9 "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? P B DA 15 ? ? 128.64 119.70 8.94 1.20 Y 304 9 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 103.07 108.00 -4.93 0.70 N 305 9 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 104.01 110.10 -6.09 1.00 N 306 9 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.64 108.30 2.34 0.30 N 307 9 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 112.26 108.30 3.96 0.30 N 308 9 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 122.59 118.90 3.69 0.60 N 309 9 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DG 18 ? ? 127.65 119.70 7.95 1.20 Y 310 9 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.70 105.90 -6.20 0.80 N 311 9 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.05 105.90 -5.85 0.80 N 312 9 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 122.97 119.00 3.97 0.60 N 313 9 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.24 122.90 -6.66 0.60 N 314 9 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 100.62 105.90 -5.28 0.80 N # _pdbx_nmr_ensemble.entry_id 1HX4 _pdbx_nmr_ensemble.conformers_calculated_total_number 9 _pdbx_nmr_ensemble.conformers_submitted_total_number 9 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1HX4 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1R-trans-anti-BPh (carcinogen) covalently bound to 11mer DNA duplex' _pdbx_nmr_sample_details.solvent_system 'aqueous solution' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 277 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.10 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 P-COSY 3 1 1 '1H-31P HSQC' # _pdbx_nmr_details.entry_id 1HX4 _pdbx_nmr_details.text 'D2O NMR experiments were performed at 13 degree C, H2O NMR experiments were performed at 4 degree C' # _pdbx_nmr_refine.entry_id 1HX4 _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing, relaxation matrix refinements, energe minimization' _pdbx_nmr_refine.details ;Nonexchangeable interproton distance restraints were obtained from the buildup of NOE cross peak volumes in NOESY data sets (55, 100, 150 and 200 ms mixing times) on the 1S-(-)-trans-anti-(BPh)G*C and the 1R-(+)-trans-anti-(BPh)G*C 11-mer DNA duplex adducts in D2O buffer at 23 and 18 sC, respectively, and bounds were set between 15% and 25% of the calculated distances using the fixed cytidine H5-H6 reference distance of 2.45 . Non-stereospecific assignments were treated with r-6 averaging. Interproton distance restraints involving exchangeable protons of the same complex were obtained from NOESY spectra (90 and 150 ms mixing times) in H2O buffer at 4 sC with bounds set between 20% and 25% of the calculated distance using the thymine imino to adenine H2 reference distance of 2.91 across an A*T base pair. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1 processing 'Varian Associates Inc.' 1 Felix felix2000 'data analysis' MSI 2 X-PLOR 3.1 refinement 'Brunger, A. T.' 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BPJ C1 C N N 1 BPJ C2 C N S 2 BPJ O2 O N N 3 BPJ C3 C N S 4 BPJ O3 O N N 5 BPJ C4 C N S 6 BPJ O4 O N N 7 BPJ C5 C Y N 8 BPJ C6 C Y N 9 BPJ C7 C Y N 10 BPJ C8 C Y N 11 BPJ C9 C Y N 12 BPJ C10 C Y N 13 BPJ C11 C Y N 14 BPJ C12 C Y N 15 BPJ C13 C Y N 16 BPJ C14 C Y N 17 BPJ C15 C Y N 18 BPJ C16 C Y N 19 BPJ C17 C Y N 20 BPJ C18 C Y N 21 BPJ H11A H N N 22 BPJ H12A H N N 23 BPJ H2 H N N 24 BPJ HO2 H N N 25 BPJ H3 H N N 26 BPJ HO3 H N N 27 BPJ H4 H N N 28 BPJ HO4 H N N 29 BPJ H5 H N N 30 BPJ H6 H N N 31 BPJ H7 H N N 32 BPJ H8 H N N 33 BPJ H9 H N N 34 BPJ H10 H N N 35 BPJ H11 H N N 36 BPJ H12 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BPJ C1 C2 sing N N 1 BPJ C1 C13 sing N N 2 BPJ C1 H11A sing N N 3 BPJ C1 H12A sing N N 4 BPJ C2 O2 sing N N 5 BPJ C2 C3 sing N N 6 BPJ C2 H2 sing N N 7 BPJ O2 HO2 sing N N 8 BPJ C3 O3 sing N N 9 BPJ C3 C4 sing N N 10 BPJ C3 H3 sing N N 11 BPJ O3 HO3 sing N N 12 BPJ C4 O4 sing N N 13 BPJ C4 C14 sing N N 14 BPJ C4 H4 sing N N 15 BPJ O4 HO4 sing N N 16 BPJ C5 C6 doub Y N 17 BPJ C5 C14 sing Y N 18 BPJ C5 H5 sing N N 19 BPJ C6 C15 sing Y N 20 BPJ C6 H6 sing N N 21 BPJ C7 C8 doub Y N 22 BPJ C7 C15 sing Y N 23 BPJ C7 H7 sing N N 24 BPJ C8 C18 sing Y N 25 BPJ C8 H8 sing N N 26 BPJ C9 C10 doub Y N 27 BPJ C9 C18 sing Y N 28 BPJ C9 H9 sing N N 29 BPJ C10 C11 sing Y N 30 BPJ C10 H10 sing N N 31 BPJ C11 C12 doub Y N 32 BPJ C11 H11 sing N N 33 BPJ C12 C17 sing Y N 34 BPJ C12 H12 sing N N 35 BPJ C13 C14 doub Y N 36 BPJ C13 C16 sing Y N 37 BPJ C15 C16 doub Y N 38 BPJ C16 C17 sing Y N 39 BPJ C17 C18 doub Y N 40 DA OP3 P sing N N 41 DA OP3 HOP3 sing N N 42 DA P OP1 doub N N 43 DA P OP2 sing N N 44 DA P "O5'" sing N N 45 DA OP2 HOP2 sing N N 46 DA "O5'" "C5'" sing N N 47 DA "C5'" "C4'" sing N N 48 DA "C5'" "H5'" sing N N 49 DA "C5'" "H5''" sing N N 50 DA "C4'" "O4'" sing N N 51 DA "C4'" "C3'" sing N N 52 DA "C4'" "H4'" sing N N 53 DA "O4'" "C1'" sing N N 54 DA "C3'" "O3'" sing N N 55 DA "C3'" "C2'" sing N N 56 DA "C3'" "H3'" sing N N 57 DA "O3'" "HO3'" sing N N 58 DA "C2'" "C1'" sing N N 59 DA "C2'" "H2'" sing N N 60 DA "C2'" "H2''" sing N N 61 DA "C1'" N9 sing N N 62 DA "C1'" "H1'" sing N N 63 DA N9 C8 sing Y N 64 DA N9 C4 sing Y N 65 DA C8 N7 doub Y N 66 DA C8 H8 sing N N 67 DA N7 C5 sing Y N 68 DA C5 C6 sing Y N 69 DA C5 C4 doub Y N 70 DA C6 N6 sing N N 71 DA C6 N1 doub Y N 72 DA N6 H61 sing N N 73 DA N6 H62 sing N N 74 DA N1 C2 sing Y N 75 DA C2 N3 doub Y N 76 DA C2 H2 sing N N 77 DA N3 C4 sing Y N 78 DC OP3 P sing N N 79 DC OP3 HOP3 sing N N 80 DC P OP1 doub N N 81 DC P OP2 sing N N 82 DC P "O5'" sing N N 83 DC OP2 HOP2 sing N N 84 DC "O5'" "C5'" sing N N 85 DC "C5'" "C4'" sing N N 86 DC "C5'" "H5'" sing N N 87 DC "C5'" "H5''" sing N N 88 DC "C4'" "O4'" sing N N 89 DC "C4'" "C3'" sing N N 90 DC "C4'" "H4'" sing N N 91 DC "O4'" "C1'" sing N N 92 DC "C3'" "O3'" sing N N 93 DC "C3'" "C2'" sing N N 94 DC "C3'" "H3'" sing N N 95 DC "O3'" "HO3'" sing N N 96 DC "C2'" "C1'" sing N N 97 DC "C2'" "H2'" sing N N 98 DC "C2'" "H2''" sing N N 99 DC "C1'" N1 sing N N 100 DC "C1'" "H1'" sing N N 101 DC N1 C2 sing N N 102 DC N1 C6 sing N N 103 DC C2 O2 doub N N 104 DC C2 N3 sing N N 105 DC N3 C4 doub N N 106 DC C4 N4 sing N N 107 DC C4 C5 sing N N 108 DC N4 H41 sing N N 109 DC N4 H42 sing N N 110 DC C5 C6 doub N N 111 DC C5 H5 sing N N 112 DC C6 H6 sing N N 113 DG OP3 P sing N N 114 DG OP3 HOP3 sing N N 115 DG P OP1 doub N N 116 DG P OP2 sing N N 117 DG P "O5'" sing N N 118 DG OP2 HOP2 sing N N 119 DG "O5'" "C5'" sing N N 120 DG "C5'" "C4'" sing N N 121 DG "C5'" "H5'" sing N N 122 DG "C5'" "H5''" sing N N 123 DG "C4'" "O4'" sing N N 124 DG "C4'" "C3'" sing N N 125 DG "C4'" "H4'" sing N N 126 DG "O4'" "C1'" sing N N 127 DG "C3'" "O3'" sing N N 128 DG "C3'" "C2'" sing N N 129 DG "C3'" "H3'" sing N N 130 DG "O3'" "HO3'" sing N N 131 DG "C2'" "C1'" sing N N 132 DG "C2'" "H2'" sing N N 133 DG "C2'" "H2''" sing N N 134 DG "C1'" N9 sing N N 135 DG "C1'" "H1'" sing N N 136 DG N9 C8 sing Y N 137 DG N9 C4 sing Y N 138 DG C8 N7 doub Y N 139 DG C8 H8 sing N N 140 DG N7 C5 sing Y N 141 DG C5 C6 sing N N 142 DG C5 C4 doub Y N 143 DG C6 O6 doub N N 144 DG C6 N1 sing N N 145 DG N1 C2 sing N N 146 DG N1 H1 sing N N 147 DG C2 N2 sing N N 148 DG C2 N3 doub N N 149 DG N2 H21 sing N N 150 DG N2 H22 sing N N 151 DG N3 C4 sing N N 152 DT OP3 P sing N N 153 DT OP3 HOP3 sing N N 154 DT P OP1 doub N N 155 DT P OP2 sing N N 156 DT P "O5'" sing N N 157 DT OP2 HOP2 sing N N 158 DT "O5'" "C5'" sing N N 159 DT "C5'" "C4'" sing N N 160 DT "C5'" "H5'" sing N N 161 DT "C5'" "H5''" sing N N 162 DT "C4'" "O4'" sing N N 163 DT "C4'" "C3'" sing N N 164 DT "C4'" "H4'" sing N N 165 DT "O4'" "C1'" sing N N 166 DT "C3'" "O3'" sing N N 167 DT "C3'" "C2'" sing N N 168 DT "C3'" "H3'" sing N N 169 DT "O3'" "HO3'" sing N N 170 DT "C2'" "C1'" sing N N 171 DT "C2'" "H2'" sing N N 172 DT "C2'" "H2''" sing N N 173 DT "C1'" N1 sing N N 174 DT "C1'" "H1'" sing N N 175 DT N1 C2 sing N N 176 DT N1 C6 sing N N 177 DT C2 O2 doub N N 178 DT C2 N3 sing N N 179 DT N3 C4 sing N N 180 DT N3 H3 sing N N 181 DT C4 O4 doub N N 182 DT C4 C5 sing N N 183 DT C5 C7 sing N N 184 DT C5 C6 doub N N 185 DT C7 H71 sing N N 186 DT C7 H72 sing N N 187 DT C7 H73 sing N N 188 DT C6 H6 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HX4 'double helix' 1HX4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.792 -0.331 0.395 -9.922 -12.295 0.771 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DC 2 1_555 B DG 10 1_555 0.423 -0.268 0.266 -5.023 -5.111 -3.216 2 A_DC2:DG21_B A 2 ? B 21 ? 19 1 1 A DA 3 1_555 B DT 9 1_555 0.129 -0.070 0.055 5.496 -13.796 -5.506 3 A_DA3:DT20_B A 3 ? B 20 ? 20 1 1 A DT 4 1_555 B DA 8 1_555 -0.172 -0.061 -0.041 12.637 -6.438 -7.300 4 A_DT4:DA19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.604 -0.289 -0.088 5.017 -12.948 -4.713 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DG 6 1_555 B DC 6 1_555 -0.852 -0.364 0.200 27.294 31.059 -5.739 6 A_DG6:DC17_B A 6 ? B 17 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.495 -0.216 0.652 -19.486 -3.812 -2.202 7 A_DC7:DG16_B A 7 ? B 16 ? 19 1 1 A DT 8 1_555 B DA 4 1_555 -0.197 -0.119 0.421 -2.011 7.088 2.425 8 A_DT8:DA15_B A 8 ? B 15 ? 20 1 1 A DA 9 1_555 B DT 3 1_555 -0.014 -0.174 0.290 7.123 -20.665 -6.565 9 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DC 10 1_555 B DG 2 1_555 0.750 -0.207 0.177 -5.354 -12.091 1.520 10 A_DC10:DG13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.622 -0.330 0.172 -13.005 3.586 -3.562 11 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DC 2 1_555 B DG 10 1_555 0.428 -0.208 2.892 2.526 -0.016 34.977 -0.343 -0.374 2.915 -0.026 -4.196 35.065 1 AA_DC1DC2:DG21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DC 2 1_555 B DG 10 1_555 A DA 3 1_555 B DT 9 1_555 -0.208 -1.368 2.631 3.983 14.188 25.316 -4.855 1.014 1.604 29.409 -8.256 29.233 2 AA_DC2DA3:DT20DG21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DA 3 1_555 B DT 9 1_555 A DT 4 1_555 B DA 8 1_555 -0.255 -0.604 2.902 1.077 6.306 31.255 -2.097 0.634 2.721 11.552 -1.974 31.887 3 AA_DA3DT4:DA19DT20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DT 4 1_555 B DA 8 1_555 A DC 5 1_555 B DG 7 1_555 0.689 0.052 3.237 4.881 0.586 42.822 0.013 -0.457 3.293 0.800 -6.659 43.091 4 AA_DT4DC5:DG18DA19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DC 5 1_555 B DG 7 1_555 A DG 6 1_555 B DC 6 1_555 0.650 -1.864 2.929 -11.161 -15.351 20.463 -0.059 -4.127 2.922 -34.989 25.440 27.841 5 AA_DC5DG6:DC17DG18_BB A 5 ? B 18 ? A 6 ? B 17 ? 1 A DC 7 1_555 B DG 5 1_555 A DT 8 1_555 B DA 4 1_555 0.143 -0.154 2.704 2.703 5.194 27.989 -1.284 0.216 2.635 10.593 -5.512 28.583 6 AA_DC7DT8:DA15DG16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DT 8 1_555 B DA 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.754 -0.030 2.885 1.630 -8.427 37.216 0.890 1.335 2.792 -12.993 -2.514 38.158 7 AA_DT8DA9:DT14DA15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DC 10 1_555 B DG 2 1_555 0.328 -0.778 3.293 -0.221 -0.252 39.274 -1.128 -0.514 3.296 -0.376 0.328 39.276 8 AA_DA9DC10:DG13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DC 10 1_555 B DG 2 1_555 A DC 11 1_555 B DG 1 1_555 0.372 -0.734 3.191 2.392 3.035 38.355 -1.476 -0.276 3.142 4.606 -3.629 38.542 9 AA_DC10DC11:DG12DG13_BB A 10 ? B 13 ? A 11 ? B 12 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 600 2 ? Varian INOVA 500 3 ? Varian INOVA 400 # _atom_sites.entry_id 1HX4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_