HEADER ANTIBIOTIC 25-JAN-01 1HZK TITLE SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE TITLE 2 AROMATIZED CHROMOPHORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-1027 APOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANTITUMOR ANTIBIOTIC C-1027 APOPROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GLOBISPORUS; SOURCE 3 ORGANISM_TAXID: 1908; SOURCE 4 STRAIN: C-1027 KEYWDS CHROMOPROTEIN, C-1027, APOPROTEIN, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR T.TANAKA,S.FUKUDA-ISHISAKA,M.HIRAMA,T.OTANI REVDAT 3 23-FEB-22 1HZK 1 REMARK REVDAT 2 24-FEB-09 1HZK 1 VERSN REVDAT 1 23-MAY-01 1HZK 0 JRNL AUTH T.TANAKA,S.FUKUDA-ISHISAKA,M.HIRAMA,T.OTANI JRNL TITL SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX JRNL TITL 2 WITH THE AROMATIZED CHROMOPHORE. JRNL REF J.MOL.BIOL. V. 309 267 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11491295 JRNL DOI 10.1006/JMBI.2001.4621 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER, A.T. (X-PLOR), BRUNGER, A.T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1539 RESTRAINTS: 1383 NOE-DERIVED DISTANCE RESTRAINTS, 86 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 64 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS, AND 6 DISTANCE RESTRAINTS FROM DISULFIDE BONDS. REMARK 4 REMARK 4 1HZK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012719. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : SAMPLE 1: 6.6-7.6MM C-1027 REMARK 210 APOPROTEIN; 99.996% D2O; SAMPLE REMARK 210 2: 6.6-7.6MM C-1027 APOPROTEIN; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; COSY; HOHAHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 7 -72.89 -46.62 REMARK 500 1 ALA A 25 -138.68 -59.97 REMARK 500 1 GLN A 42 -86.02 -147.79 REMARK 500 1 ASP A 56 -79.73 -177.13 REMARK 500 1 ALA A 57 86.92 -65.43 REMARK 500 1 ALA A 61 78.37 -163.53 REMARK 500 1 THR A 72 99.91 -58.35 REMARK 500 2 PRO A 2 -162.73 -73.19 REMARK 500 2 ALA A 3 115.50 -162.14 REMARK 500 2 PRO A 8 -87.82 -69.09 REMARK 500 2 SER A 10 149.13 -178.13 REMARK 500 2 GLN A 16 154.75 -45.68 REMARK 500 2 ALA A 26 133.17 58.57 REMARK 500 2 ALA A 27 141.63 -39.08 REMARK 500 2 GLN A 42 -161.45 -116.41 REMARK 500 2 THR A 55 -160.67 -56.19 REMARK 500 2 ASP A 56 -158.29 -153.92 REMARK 500 2 THR A 79 99.70 -166.11 REMARK 500 2 ALA A 89 -163.20 -103.64 REMARK 500 2 ASN A 97 -157.14 -83.58 REMARK 500 3 PRO A 2 -162.20 -72.64 REMARK 500 3 SER A 7 -70.54 -81.97 REMARK 500 3 ALA A 25 -175.20 -52.82 REMARK 500 3 ALA A 27 136.37 -30.19 REMARK 500 3 GLN A 42 -163.25 -78.77 REMARK 500 3 THR A 55 -156.00 -67.28 REMARK 500 3 ALA A 61 83.87 -159.11 REMARK 500 3 VAL A 81 -37.00 -173.83 REMARK 500 3 ASN A 97 -104.24 -129.69 REMARK 500 3 SER A 98 -84.41 -65.42 REMARK 500 3 ASP A 101 101.14 50.83 REMARK 500 3 PHE A 109 71.44 -152.72 REMARK 500 4 PRO A 2 -160.38 -70.46 REMARK 500 4 ALA A 25 -158.37 -57.45 REMARK 500 4 ALA A 26 149.99 -170.95 REMARK 500 4 THR A 55 -156.35 -62.66 REMARK 500 4 SER A 74 -149.80 -134.73 REMARK 500 4 GLU A 77 16.69 -155.14 REMARK 500 4 THR A 79 127.60 -172.53 REMARK 500 4 VAL A 81 -33.91 -132.64 REMARK 500 4 ALA A 89 -140.13 -143.56 REMARK 500 4 ASN A 97 -150.69 -139.33 REMARK 500 4 SER A 98 40.32 -101.81 REMARK 500 4 LEU A 100 -153.74 -103.27 REMARK 500 4 ASP A 101 117.26 -170.58 REMARK 500 4 ALA A 106 94.30 -63.05 REMARK 500 5 PRO A 2 -159.56 -71.24 REMARK 500 5 ALA A 25 -139.67 -63.92 REMARK 500 5 VAL A 39 58.37 -141.15 REMARK 500 5 GLN A 42 -150.98 -88.18 REMARK 500 REMARK 500 THIS ENTRY HAS 310 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 68 0.29 SIDE CHAIN REMARK 500 2 ARG A 68 0.12 SIDE CHAIN REMARK 500 3 ARG A 68 0.25 SIDE CHAIN REMARK 500 4 ARG A 68 0.30 SIDE CHAIN REMARK 500 5 ARG A 68 0.24 SIDE CHAIN REMARK 500 6 ARG A 68 0.29 SIDE CHAIN REMARK 500 7 ARG A 68 0.31 SIDE CHAIN REMARK 500 8 ARG A 68 0.21 SIDE CHAIN REMARK 500 9 ARG A 68 0.12 SIDE CHAIN REMARK 500 10 ARG A 68 0.30 SIDE CHAIN REMARK 500 11 ARG A 68 0.31 SIDE CHAIN REMARK 500 12 ARG A 68 0.22 SIDE CHAIN REMARK 500 13 ARG A 68 0.24 SIDE CHAIN REMARK 500 14 ARG A 68 0.32 SIDE CHAIN REMARK 500 15 ARG A 68 0.26 SIDE CHAIN REMARK 500 16 ARG A 68 0.31 SIDE CHAIN REMARK 500 17 ARG A 68 0.19 SIDE CHAIN REMARK 500 18 ARG A 68 0.10 SIDE CHAIN REMARK 500 19 ARG A 68 0.30 SIDE CHAIN REMARK 500 20 ARG A 68 0.17 SIDE CHAIN REMARK 500 21 ARG A 68 0.25 SIDE CHAIN REMARK 500 22 ARG A 68 0.22 SIDE CHAIN REMARK 500 23 ARG A 68 0.17 SIDE CHAIN REMARK 500 24 ARG A 68 0.25 SIDE CHAIN REMARK 500 25 ARG A 68 0.17 SIDE CHAIN REMARK 500 26 ARG A 68 0.32 SIDE CHAIN REMARK 500 27 ARG A 68 0.32 SIDE CHAIN REMARK 500 28 ARG A 68 0.15 SIDE CHAIN REMARK 500 29 ARG A 68 0.29 SIDE CHAIN REMARK 500 30 ARG A 68 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4946 RELATED DB: BMRB REMARK 900 4946 CONTAINS 1H RESONANCE ASSIGNMENTS OF C-1027 APOPROTEIN. REMARK 900 RELATED ID: 1HZL RELATED DB: PDB REMARK 900 1HZL IS C-1027 APOPROTEIN COMPLEXED WITH THE AROMATIZED CHROMOPHORE. DBREF 1HZK A 1 110 UNP Q06110 CAGA_STRGL 34 143 SEQRES 1 A 110 ALA PRO ALA PHE SER VAL SER PRO ALA SER GLY LEU SER SEQRES 2 A 110 ASP GLY GLN SER VAL SER VAL SER VAL SER GLY ALA ALA SEQRES 3 A 110 ALA GLY GLU THR TYR TYR ILE ALA GLN CYS ALA PRO VAL SEQRES 4 A 110 GLY GLY GLN ASP ALA CYS ASN PRO ALA THR ALA THR SER SEQRES 5 A 110 PHE THR THR ASP ALA SER GLY ALA ALA SER PHE SER PHE SEQRES 6 A 110 VAL VAL ARG LYS SER TYR THR GLY SER THR PRO GLU GLY SEQRES 7 A 110 THR PRO VAL GLY SER VAL ASP CYS ALA THR ALA ALA CYS SEQRES 8 A 110 ASN LEU GLY ALA GLY ASN SER GLY LEU ASP LEU GLY HIS SEQRES 9 A 110 VAL ALA LEU THR PHE GLY SHEET 1 A 3 PHE A 4 VAL A 6 0 SHEET 2 A 3 SER A 17 SER A 23 -1 N SER A 21 O SER A 5 SHEET 3 A 3 ALA A 60 VAL A 66 -1 N ALA A 61 O VAL A 22 SHEET 1 B 4 GLY A 103 LEU A 107 0 SHEET 2 B 4 CYS A 91 GLY A 96 -1 O CYS A 91 N LEU A 107 SHEET 3 B 4 THR A 30 PRO A 38 -1 O TYR A 32 N GLY A 96 SHEET 4 B 4 ASP A 43 CYS A 45 -1 O ALA A 44 N ALA A 37 SHEET 1 C 4 GLY A 103 LEU A 107 0 SHEET 2 C 4 CYS A 91 GLY A 96 -1 O CYS A 91 N LEU A 107 SHEET 3 C 4 THR A 30 PRO A 38 -1 O TYR A 32 N GLY A 96 SHEET 4 C 4 THR A 51 THR A 54 -1 N THR A 51 O ILE A 33 SHEET 1 D 2 SER A 70 GLY A 73 0 SHEET 2 D 2 GLY A 82 ASP A 85 -1 O GLY A 82 N GLY A 73 SSBOND 1 CYS A 36 CYS A 45 1555 1555 2.02 SSBOND 2 CYS A 86 CYS A 91 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1