HEADER BIOSYNTHETIC PROTEIN 07-FEB-01 1I2B TITLE CRYSTAL STRUCTURE OF MUTANT T145A SQD1 PROTEIN COMPLEX WITH NAD AND TITLE 2 UDP-SULFOQUINOVOSE/UDP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOLIPID BIOSYNTHESIS PROTEIN SQD1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COLUMBIA (COL-2); SOURCE 6 GENE: SQD1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSQD1 KEYWDS SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD, BIOSYNTHETIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.THEISEN,S.L.SANDA,S.L.GINELL,C.BENNING,R.M.GARAVITO REVDAT 7 09-AUG-23 1I2B 1 REMARK REVDAT 6 27-OCT-21 1I2B 1 REMARK SEQADV REVDAT 5 04-APR-18 1I2B 1 REMARK REVDAT 4 16-NOV-11 1I2B 1 HETATM REVDAT 3 13-JUL-11 1I2B 1 VERSN REVDAT 2 24-FEB-09 1I2B 1 VERSN REVDAT 1 01-JUL-03 1I2B 0 JRNL AUTH M.J.THEISEN,S.L.SANDA,S.L.GINELL,C.BENNING,R.M.GARAVITO JRNL TITL CHARACTERIZATION OF THE ACTIVE SITE OF UDP-SULFOQUINOVOSE JRNL TITL 2 SYNTHASE: FORMATION OF THE SULFONIC ACID PRODUCT IN THE JRNL TITL 3 CRYSTALLINE STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9A REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 63693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : R-FREE FLAGS WERE ASSIGNED REMARK 3 USING THE CCP4 SUITE, BASED REMARK 3 ON A STANDARD SET OF FLAGS REMARK 3 USED FOR ALL SQD1 STRUCTURAL REMARK 3 REFINEMENTS. REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3194 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5947 REMARK 3 BIN R VALUE (WORKING SET) : 0.3015 REMARK 3 BIN FREE R VALUE : 0.2933 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 283 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.270 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.09 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.740 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.598 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.935 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 0.939 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.365 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 62.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MAX-FLUX CONFOCAL, REMARK 200 MULTILAYER MIRRORS REMARK 200 OPTICS : OSMIC MAX-FLUX CONFOCAL, REMARK 200 MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, CCP4, CRYSTALCLEAR REMARK 200 (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63698 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.960 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.9A REMARK 200 STARTING MODEL: PDB ENTRY 1QRR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CHLORIDE, MES REMARK 280 BUFFER, NAD+, UDP-GLUCOSE, SODIUM SULFITE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 79.82200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.55300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.77650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.82200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.32950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.32950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.82200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.77650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 79.82200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.55300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.82200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.55300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.82200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.32950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 24.77650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.82200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 24.77650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.32950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.82200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.82200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.55300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SOLUTION FORM IS LIKELY A DIMER GENERATED BY 2-FOLD REMARK 300 ROTATION OF THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT ABOUT THE C-AXIS: - REMARK 300 X -Y Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 159.64400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 159.64400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -271.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 159.64400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 159.64400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.10600 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 159.64400 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 159.64400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 99.10600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 600 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ARG A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 THR A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 1 N REMARK 470 GLU A 46 OE1 OE2 REMARK 470 THR A 49 CG2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 GLU A 80 CD OE1 OE2 REMARK 470 GLU A 84 CD OE1 OE2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 GLU A 137 OE1 OE2 REMARK 470 LYS A 198 CD CE NZ REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 221 CD OE1 OE2 REMARK 470 GLU A 224 CD OE1 OE2 REMARK 470 ARG A 227 CZ NH1 NH2 REMARK 470 LYS A 258 NZ REMARK 470 LYS A 284 CD CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 SER A 312 OG REMARK 470 GLU A 332 OE1 OE2 REMARK 470 LYS A 338 CD CE NZ REMARK 470 GLU A 344 CD OE1 OE2 REMARK 470 GLU A 348 OE1 OE2 REMARK 470 ASP A 369 CG OD1 OD2 REMARK 470 LYS A 383 CE NZ REMARK 470 LYS A 384 CD CE NZ REMARK 470 LYS A 388 CD CE NZ REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 MET A 392 SD CE REMARK 470 THR A 393 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 145 136.88 -174.03 REMARK 500 ALA A 239 -70.88 -35.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE USQ A 2402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QRR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SQD1 PROTEIN COMPLEX WITH NAD AND UDP-GLUCOSE DBREF 1I2B A 3 394 UNP O48917 SQD1_ARATH 86 477 SEQADV 1I2B MET A -9 UNP O48917 EXPRESSION TAG SEQADV 1I2B ARG A -8 UNP O48917 EXPRESSION TAG SEQADV 1I2B GLY A -7 UNP O48917 EXPRESSION TAG SEQADV 1I2B SER A -6 UNP O48917 EXPRESSION TAG SEQADV 1I2B HIS A -5 UNP O48917 EXPRESSION TAG SEQADV 1I2B HIS A -4 UNP O48917 EXPRESSION TAG SEQADV 1I2B HIS A -3 UNP O48917 EXPRESSION TAG SEQADV 1I2B HIS A -2 UNP O48917 EXPRESSION TAG SEQADV 1I2B HIS A -1 UNP O48917 EXPRESSION TAG SEQADV 1I2B HIS A 0 UNP O48917 EXPRESSION TAG SEQADV 1I2B GLY A 1 UNP O48917 EXPRESSION TAG SEQADV 1I2B SER A 2 UNP O48917 EXPRESSION TAG SEQADV 1I2B ALA A 145 UNP O48917 THR 228 ENGINEERED MUTATION SEQRES 1 A 404 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 A 404 VAL MET VAL ILE GLY GLY ASP GLY TYR CYS GLY TRP ALA SEQRES 3 A 404 THR ALA LEU HIS LEU SER LYS LYS ASN TYR GLU VAL CYS SEQRES 4 A 404 ILE VAL ASP ASN LEU VAL ARG ARG LEU PHE ASP HIS GLN SEQRES 5 A 404 LEU GLY LEU GLU SER LEU THR PRO ILE ALA SER ILE HIS SEQRES 6 A 404 ASP ARG ILE SER ARG TRP LYS ALA LEU THR GLY LYS SER SEQRES 7 A 404 ILE GLU LEU TYR VAL GLY ASP ILE CYS ASP PHE GLU PHE SEQRES 8 A 404 LEU ALA GLU SER PHE LYS SER PHE GLU PRO ASP SER VAL SEQRES 9 A 404 VAL HIS PHE GLY GLU GLN ARG SER ALA PRO TYR SER MET SEQRES 10 A 404 ILE ASP ARG SER ARG ALA VAL TYR THR GLN HIS ASN ASN SEQRES 11 A 404 VAL ILE GLY THR LEU ASN VAL LEU PHE ALA ILE LYS GLU SEQRES 12 A 404 PHE GLY GLU GLU CYS HIS LEU VAL LYS LEU GLY ALA MET SEQRES 13 A 404 GLY GLU TYR GLY THR PRO ASN ILE ASP ILE GLU GLU GLY SEQRES 14 A 404 TYR ILE THR ILE THR HIS ASN GLY ARG THR ASP THR LEU SEQRES 15 A 404 PRO TYR PRO LYS GLN ALA SER SER PHE TYR HIS LEU SER SEQRES 16 A 404 LYS VAL HIS ASP SER HIS ASN ILE ALA PHE THR CYS LYS SEQRES 17 A 404 ALA TRP GLY ILE ARG ALA THR ASP LEU ASN GLN GLY VAL SEQRES 18 A 404 VAL TYR GLY VAL LYS THR ASP GLU THR GLU MET HIS GLU SEQRES 19 A 404 GLU LEU ARG ASN ARG LEU ASP TYR ASP ALA VAL PHE GLY SEQRES 20 A 404 THR ALA LEU ASN ARG PHE CYS VAL GLN ALA ALA VAL GLY SEQRES 21 A 404 HIS PRO LEU THR VAL TYR GLY LYS GLY GLY GLN THR ARG SEQRES 22 A 404 GLY TYR LEU ASP ILE ARG ASP THR VAL GLN CYS VAL GLU SEQRES 23 A 404 ILE ALA ILE ALA ASN PRO ALA LYS ALA GLY GLU PHE ARG SEQRES 24 A 404 VAL PHE ASN GLN PHE THR GLU GLN PHE SER VAL ASN GLU SEQRES 25 A 404 LEU ALA SER LEU VAL THR LYS ALA GLY SER LYS LEU GLY SEQRES 26 A 404 LEU ASP VAL LYS LYS MET THR VAL PRO ASN PRO ARG VAL SEQRES 27 A 404 GLU ALA GLU GLU HIS TYR TYR ASN ALA LYS HIS THR LYS SEQRES 28 A 404 LEU MET GLU LEU GLY LEU GLU PRO HIS TYR LEU SER ASP SEQRES 29 A 404 SER LEU LEU ASP SER LEU LEU ASN PHE ALA VAL GLN PHE SEQRES 30 A 404 LYS ASP ARG VAL ASP THR LYS GLN ILE MET PRO SER VAL SEQRES 31 A 404 SER TRP LYS LYS ILE GLY VAL LYS THR LYS SER MET THR SEQRES 32 A 404 THR HET SO4 A 403 5 HET SO4 A 404 5 HET NAD A 401 44 HET UPG A1402 36 HET USQ A2402 39 HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM USQ SULFOQUINOVOSE-URIDINE-C1,5'-DIPHOSPHATE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 NAD C21 H27 N7 O14 P2 FORMUL 5 UPG C15 H24 N2 O17 P2 FORMUL 6 USQ C15 H24 N2 O19 P2 S FORMUL 7 HOH *402(H2 O) HELIX 1 1 GLY A 11 LYS A 24 1 14 HELIX 2 2 LEU A 34 GLY A 44 1 11 HELIX 3 3 SER A 53 GLY A 66 1 14 HELIX 4 4 ASP A 78 GLU A 90 1 13 HELIX 5 5 SER A 102 MET A 107 1 6 HELIX 6 6 ASP A 109 GLY A 135 1 27 HELIX 7 7 ALA A 145 GLY A 150 5 6 HELIX 8 8 SER A 180 GLY A 201 1 22 HELIX 9 9 GLU A 219 HIS A 223 5 5 HELIX 10 10 HIS A 223 ARG A 227 5 5 HELIX 11 11 THR A 238 GLY A 250 1 13 HELIX 12 12 ILE A 268 ASN A 281 1 14 HELIX 13 13 VAL A 300 LYS A 313 1 14 HELIX 14 14 THR A 340 LEU A 345 1 6 HELIX 15 15 SER A 353 PHE A 367 1 15 HELIX 16 16 LYS A 368 VAL A 371 5 4 HELIX 17 17 ASP A 372 ILE A 376 5 5 SHEET 1 A 7 GLU A 70 VAL A 73 0 SHEET 2 A 7 GLU A 27 ASP A 32 1 O VAL A 28 N GLU A 70 SHEET 3 A 7 ARG A 3 ILE A 7 1 N VAL A 4 O GLU A 27 SHEET 4 A 7 SER A 93 HIS A 96 1 O SER A 93 N MET A 5 SHEET 5 A 7 HIS A 139 LEU A 143 1 O HIS A 139 N VAL A 94 SHEET 6 A 7 ARG A 203 GLN A 209 1 O ARG A 203 N LEU A 140 SHEET 7 A 7 PHE A 288 GLN A 293 1 O ARG A 289 N ASP A 206 SHEET 1 B 2 TYR A 160 HIS A 165 0 SHEET 2 B 2 ARG A 168 PRO A 173 -1 O ARG A 168 N HIS A 165 SHEET 1 C 3 VAL A 211 TYR A 213 0 SHEET 2 C 3 THR A 262 ASP A 267 1 O GLY A 264 N VAL A 211 SHEET 3 C 3 GLU A 296 SER A 299 -1 O GLU A 296 N TYR A 265 SHEET 1 D 2 LEU A 253 TYR A 256 0 SHEET 2 D 2 LYS A 320 VAL A 323 1 N MET A 321 O LEU A 253 SITE 1 AC1 6 PHE A 294 GLU A 296 GLN A 297 HIS A 339 SITE 2 AC1 6 HOH A 695 HOH A 710 SITE 1 AC2 4 HIS A 20 LYS A 24 HOH A 717 HOH A 945 SITE 1 AC3 31 GLY A 8 GLY A 11 TYR A 12 CYS A 13 SITE 2 AC3 31 ASP A 32 ASN A 33 LEU A 34 VAL A 35 SITE 3 AC3 31 ARG A 36 GLY A 74 ASP A 75 ILE A 76 SITE 4 AC3 31 PHE A 97 GLY A 98 GLU A 99 ARG A 101 SITE 5 AC3 31 ASN A 119 LEU A 143 TYR A 182 LYS A 186 SITE 6 AC3 31 GLN A 209 GLY A 210 VAL A 212 HOH A 440 SITE 7 AC3 31 HOH A 441 HOH A 442 HOH A 443 HOH A 444 SITE 8 AC3 31 HOH A 620 UPG A1402 USQ A2402 SITE 1 AC4 24 ARG A 101 ALA A 103 ALA A 145 MET A 146 SITE 2 AC4 24 GLY A 147 TYR A 182 HIS A 183 GLN A 209 SITE 3 AC4 24 VAL A 211 THR A 238 ALA A 239 ARG A 242 SITE 4 AC4 24 THR A 254 TYR A 256 GLN A 261 ARG A 263 SITE 5 AC4 24 VAL A 300 ARG A 327 GLU A 329 NAD A 401 SITE 6 AC4 24 HOH A 420 HOH A 422 HOH A 460 HOH A 463 SITE 1 AC5 24 ARG A 101 ALA A 103 ALA A 145 MET A 146 SITE 2 AC5 24 GLY A 147 TYR A 182 HIS A 183 GLN A 209 SITE 3 AC5 24 VAL A 211 THR A 238 ALA A 239 ARG A 242 SITE 4 AC5 24 THR A 254 TYR A 256 GLN A 261 ARG A 263 SITE 5 AC5 24 VAL A 300 ARG A 327 GLU A 329 NAD A 401 SITE 6 AC5 24 HOH A 420 HOH A 422 HOH A 460 HOH A 463 CRYST1 159.644 159.644 99.106 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010090 0.00000 CONECT 3045 3046 3047 3048 3049 CONECT 3046 3045 CONECT 3047 3045 CONECT 3048 3045 CONECT 3049 3045 CONECT 3050 3051 3052 3053 3054 CONECT 3051 3050 CONECT 3052 3050 CONECT 3053 3050 CONECT 3054 3050 CONECT 3055 3056 3057 3058 3077 CONECT 3056 3055 CONECT 3057 3055 CONECT 3058 3055 3059 CONECT 3059 3058 3060 CONECT 3060 3059 3061 3062 CONECT 3061 3060 3066 CONECT 3062 3060 3063 3064 CONECT 3063 3062 CONECT 3064 3062 3065 3066 CONECT 3065 3064 CONECT 3066 3061 3064 3067 CONECT 3067 3066 3068 3076 CONECT 3068 3067 3069 CONECT 3069 3068 3070 CONECT 3070 3069 3071 3076 CONECT 3071 3070 3072 3073 CONECT 3072 3071 CONECT 3073 3071 3074 CONECT 3074 3073 3075 CONECT 3075 3074 3076 CONECT 3076 3067 3070 3075 CONECT 3077 3055 3078 CONECT 3078 3077 3079 3080 3081 CONECT 3079 3078 CONECT 3080 3078 CONECT 3081 3078 3082 CONECT 3082 3081 3083 CONECT 3083 3082 3084 3085 CONECT 3084 3083 3089 CONECT 3085 3083 3086 3087 CONECT 3086 3085 CONECT 3087 3085 3088 3089 CONECT 3088 3087 CONECT 3089 3084 3087 3090 CONECT 3090 3089 3091 3098 CONECT 3091 3090 3092 CONECT 3092 3091 3093 3096 CONECT 3093 3092 3094 3095 CONECT 3094 3093 CONECT 3095 3093 CONECT 3096 3092 3097 CONECT 3097 3096 3098 CONECT 3098 3090 3097 CONECT 3099 3100 3104 3107 CONECT 3100 3099 3101 3105 CONECT 3101 3100 3102 CONECT 3102 3101 3103 3106 CONECT 3103 3102 3104 CONECT 3104 3099 3103 CONECT 3105 3100 CONECT 3106 3102 CONECT 3107 3099 3108 3112 CONECT 3108 3107 3109 3110 CONECT 3109 3108 CONECT 3110 3108 3111 3113 CONECT 3111 3110 3112 3114 CONECT 3112 3107 3111 CONECT 3113 3110 CONECT 3114 3111 3115 CONECT 3115 3114 3116 CONECT 3116 3115 3117 3118 3119 CONECT 3117 3116 CONECT 3118 3116 CONECT 3119 3116 3120 CONECT 3120 3119 3121 3122 3123 CONECT 3121 3120 CONECT 3122 3120 CONECT 3123 3120 3124 CONECT 3124 3123 3125 3133 CONECT 3125 3124 3126 3130 CONECT 3126 3125 3127 3131 CONECT 3127 3126 3128 3132 CONECT 3128 3127 3129 3133 CONECT 3129 3128 3134 CONECT 3130 3125 CONECT 3131 3126 CONECT 3132 3127 CONECT 3133 3124 3128 CONECT 3134 3129 CONECT 3135 3136 3140 3143 CONECT 3136 3135 3137 3141 CONECT 3137 3136 3138 CONECT 3138 3137 3139 3142 CONECT 3139 3138 3140 CONECT 3140 3135 3139 CONECT 3141 3136 CONECT 3142 3138 CONECT 3143 3135 3144 3148 CONECT 3144 3143 3145 3146 CONECT 3145 3144 CONECT 3146 3144 3147 3149 CONECT 3147 3146 3148 3150 CONECT 3148 3143 3147 CONECT 3149 3146 CONECT 3150 3147 3151 CONECT 3151 3150 3152 CONECT 3152 3151 3153 3154 3155 CONECT 3153 3152 CONECT 3154 3152 CONECT 3155 3152 3156 CONECT 3156 3155 3157 3158 3159 CONECT 3157 3156 CONECT 3158 3156 CONECT 3159 3156 3160 CONECT 3160 3159 3161 3169 CONECT 3161 3160 3162 3166 CONECT 3162 3161 3163 3167 CONECT 3163 3162 3164 3168 CONECT 3164 3163 3165 3169 CONECT 3165 3164 3170 CONECT 3166 3161 CONECT 3167 3162 CONECT 3168 3163 CONECT 3169 3160 3164 CONECT 3170 3165 3171 3172 3173 CONECT 3171 3170 CONECT 3172 3170 CONECT 3173 3170 MASTER 400 0 5 17 14 0 23 6 3559 1 129 32 END